Wall clock time and date at job start Tue Mar 31 2020 01:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34986 * 126.54793 * 2 1 4 4 O 1.35202 * 125.48339 * 0.02562 * 3 2 1 5 5 N 1.31545 * 109.03035 * 180.02562 * 3 2 1 6 6 C 1.33198 * 109.77346 * 359.76737 * 5 3 2 7 7 C 1.36849 * 107.95049 * 0.37692 * 6 5 3 8 8 C 1.46263 * 126.83015 * 179.89489 * 7 6 5 9 9 O 1.21782 * 119.99865 * 187.68274 * 8 7 6 10 10 N 1.34771 * 120.00356 * 7.68216 * 8 7 6 11 11 C 1.36912 * 119.99764 * 6.59457 * 10 8 7 12 12 H 1.08002 * 119.99506 * 244.96550 * 11 10 8 13 13 C 1.38979 * 119.99969 * 64.96466 * 11 10 8 14 14 N 1.31420 * 120.00062 * 355.24990 * 13 11 10 15 15 Si 1.86799 * 120.00056 * 175.25214 * 13 11 10 16 16 H 1.48505 * 109.47125 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47133 * 119.99428 * 15 13 11 18 18 H 1.48497 * 109.47475 * 240.00170 * 15 13 11 19 19 C 1.46502 * 120.00299 * 186.59485 * 10 8 7 20 20 C 1.55233 * 110.46591 * 229.83234 * 19 10 8 21 21 C 1.54892 * 102.58964 * 203.39306 * 20 19 10 22 22 C 1.54267 * 104.31083 * 37.93229 * 21 20 19 23 23 C 1.53884 * 106.59754 * 336.32521 * 22 21 20 24 24 H 1.09005 * 109.46698 * 274.88110 * 1 2 3 25 25 H 1.08997 * 109.47191 * 34.87409 * 1 2 3 26 26 H 1.08992 * 109.47219 * 154.87782 * 1 2 3 27 27 H 0.96698 * 114.00083 * 89.99127 * 4 3 2 28 28 H 1.07998 * 126.02716 * 180.25883 * 6 5 3 29 29 H 0.96995 * 119.99480 * 180.02562 * 14 13 11 30 30 H 1.08999 * 110.43353 * 352.47987 * 19 10 8 31 31 H 1.09002 * 110.89862 * 85.09982 * 20 19 10 32 32 H 1.09004 * 110.76939 * 321.62680 * 20 19 10 33 33 H 1.08999 * 110.48375 * 279.19083 * 21 20 19 34 34 H 1.08999 * 110.48810 * 156.67801 * 21 20 19 35 35 H 1.08994 * 110.03112 * 95.61031 * 22 21 20 36 36 H 1.08998 * 110.03033 * 216.99903 * 22 21 20 37 37 H 1.09004 * 110.03094 * 119.28357 * 23 22 21 38 38 H 1.09000 * 110.02927 * 240.66351 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2689 1.0844 0.0000 4 8 1.8518 2.3705 0.0005 5 7 3.5234 0.6885 -0.0006 6 6 3.5758 -0.6425 0.0042 7 6 2.2915 -1.1152 -0.0007 8 6 1.8731 -2.5167 -0.0002 9 8 0.6980 -2.8013 -0.1459 10 7 2.7879 -3.4931 0.1614 11 6 4.0853 -3.1730 0.4594 12 1 4.8724 -3.3979 -0.2451 13 6 4.3893 -2.5587 1.6685 14 7 3.4236 -2.2005 2.4847 15 14 6.1706 -2.2422 2.1334 16 1 7.0599 -2.7354 1.0511 17 1 6.3817 -0.7843 2.3209 18 1 6.4865 -2.9548 3.3974 19 6 2.3942 -4.8969 0.0181 20 6 2.8908 -5.7266 1.2325 21 6 2.9489 -7.1639 0.6583 22 6 3.4566 -6.9772 -0.7864 23 6 3.1039 -5.5357 -1.1934 24 1 -0.3633 0.0874 1.0240 25 1 -0.3633 0.8431 -0.5876 26 1 -0.3633 -0.9304 -0.4363 27 1 1.7307 2.7444 0.8840 28 1 4.4735 -1.2428 0.0089 29 1 3.6358 -1.7715 3.3283 30 1 1.3124 -4.9799 -0.0860 31 1 2.1822 -5.6689 2.0587 32 1 3.8807 -5.3962 1.5475 33 1 1.9566 -7.6152 0.6586 34 1 3.6454 -7.7759 1.2314 35 1 4.5361 -7.1224 -0.8244 36 1 2.9612 -7.6853 -1.4507 37 1 4.0124 -4.9814 -1.4290 38 1 2.4375 -5.5438 -2.0560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601206422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:34 Heat of formation + Delta-G solvation = -4.136680 kcal Electronic energy + Delta-G solvation = -23125.061382 eV Core-core repulsion = 19776.411838 eV Total energy + Delta-G solvation = -3348.649543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24107 -38.76542 -36.91673 -36.36027 -34.54680 -33.04313 -31.52489 -28.65404 -28.00578 -26.68389 -26.18743 -25.09623 -22.04049 -20.75484 -19.83726 -19.50794 -19.41251 -17.87309 -16.82896 -15.91558 -15.77178 -15.32082 -14.92477 -14.56629 -14.36654 -13.78232 -13.53300 -13.21678 -12.91842 -12.67721 -12.60878 -12.14293 -11.95430 -11.66180 -11.51543 -11.36195 -11.06148 -10.87755 -10.65829 -10.57691 -10.41430 -10.35916 -9.94700 -9.66659 -9.34453 -8.97033 -8.82453 -8.53126 -7.45464 -7.08600 -6.44987 -4.38781 2.25697 3.06776 3.12830 3.22835 3.25539 3.67187 4.02456 4.51129 4.67221 4.73640 4.91644 5.31343 5.34937 5.37509 5.48575 5.68632 5.92560 6.05032 6.05858 6.17657 6.20277 6.25934 6.29115 6.43985 6.48121 6.48534 6.65620 6.66654 6.84034 6.92143 7.02342 7.20392 7.31928 7.35380 7.63968 7.97377 8.23833 8.52746 8.76684 8.88200 9.45514 9.90452 10.57771 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.007917 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.631929 B = 3535.686677 C = 4595.120075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.439 5.439 3 C 0.347 3.653 4 O -0.449 6.449 5 N -0.504 5.504 6 C 0.061 3.939 7 C -0.010 4.010 8 C 0.590 3.410 9 O -0.616 6.616 10 N -0.431 5.431 11 C -0.363 4.363 12 H 0.086 0.914 13 C 0.066 3.934 14 N -0.839 5.839 15 Si 0.899 3.101 16 H -0.261 1.261 17 H -0.271 1.271 18 H -0.278 1.278 19 C 0.140 3.860 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.131 4.131 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.390 0.610 28 H 0.206 0.794 29 H 0.271 0.729 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -1.407 -1.650 2.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.133 5.133 3 C 0.050 3.950 4 O -0.248 6.248 5 N -0.234 5.234 6 C -0.090 4.090 7 C -0.125 4.125 8 C 0.381 3.619 9 O -0.504 6.504 10 N -0.149 5.149 11 C -0.491 4.491 12 H 0.103 0.897 13 C -0.145 4.145 14 N -0.470 5.470 15 Si 0.724 3.276 16 H -0.185 1.185 17 H -0.196 1.196 18 H -0.204 1.204 19 C 0.036 3.964 20 C -0.154 4.154 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.169 4.169 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.245 0.755 28 H 0.222 0.778 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.363 -0.885 -2.143 2.689 hybrid contribution -0.014 -0.007 1.196 1.196 sum -1.377 -0.892 -0.947 1.894 Atomic orbital electron populations 1.22081 0.76974 1.05225 1.02814 1.45451 1.07441 1.06239 1.54213 1.20129 0.85245 0.80701 1.08942 1.84747 1.87492 1.19231 1.33372 1.70290 1.16121 1.14662 1.22372 1.23805 0.98022 0.87777 0.99391 1.20502 0.90262 0.87783 1.13927 1.16863 0.84900 0.83457 0.76646 1.90579 1.18281 1.84321 1.57172 1.42678 1.08422 1.01746 1.62048 1.19021 0.83827 1.44175 1.02041 0.89669 1.25739 0.98602 0.94896 0.95297 1.69866 1.32285 1.34921 1.09958 0.86320 0.82957 0.79065 0.79251 1.18510 1.19597 1.20389 1.21861 0.98315 0.82712 0.93494 1.22673 1.02945 0.92565 0.97169 1.22315 1.00089 0.97829 0.96020 1.22023 1.00383 0.96671 0.96345 1.22430 1.01199 0.95277 0.98044 0.91449 0.90768 0.87424 0.75523 0.77801 0.91819 0.90134 0.92668 0.89558 0.92527 0.92418 0.92249 0.92878 0.90770 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 10.84 59.85 0.65 1.91 16 2 N -0.44 -9.46 3.20 -122.11 -0.39 -9.85 16 3 C 0.35 7.30 9.01 -89.55 -0.81 6.50 16 4 O -0.45 -7.51 13.53 -17.30 -0.23 -7.74 16 5 N -0.50 -11.76 11.22 -14.58 -0.16 -11.92 16 6 C 0.06 1.47 9.07 -17.46 -0.16 1.31 16 7 C -0.01 -0.24 5.99 -81.99 -0.49 -0.74 16 8 C 0.59 14.96 6.91 -13.04 -0.09 14.87 16 9 O -0.62 -16.21 14.18 5.12 0.07 -16.14 16 10 N -0.43 -10.21 2.40 -107.38 -0.26 -10.46 16 11 C -0.36 -8.45 4.52 -15.01 -0.07 -8.52 16 12 H 0.09 1.93 7.24 -52.49 -0.38 1.55 16 13 C 0.07 1.56 3.20 -17.45 -0.06 1.50 16 14 N -0.84 -21.37 11.86 55.50 0.66 -20.71 16 15 Si 0.90 18.71 28.78 -169.99 -4.89 13.82 16 16 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 C 0.14 2.93 3.26 -66.09 -0.22 2.72 16 20 C -0.12 -2.22 6.39 -24.55 -0.16 -2.37 16 21 C -0.12 -1.90 6.82 -25.07 -0.17 -2.07 16 22 C -0.12 -1.72 6.80 -25.61 -0.17 -1.90 16 23 C -0.13 -2.32 6.43 -25.61 -0.16 -2.48 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.11 2.07 6.14 -51.93 -0.32 1.75 16 27 H 0.39 4.51 9.06 45.56 0.41 4.92 16 28 H 0.21 4.88 3.99 -52.49 -0.21 4.67 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.08 1.79 7.00 -51.93 -0.36 1.43 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.80 7.00 -51.93 -0.36 1.44 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.37 6.94 -51.93 -0.36 1.01 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -29.70 306.55 -6.59 -36.29 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.10 Total: 11.38 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -1.90 Total: 10.73 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.15 Total: -52.95 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.16 Total: -23.88 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.89 Total: 13.82 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.70 -6.59 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.152 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds