Wall clock time and date at job start Tue Mar 31 2020 01:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34986 * 126.54793 * 2 1 4 4 O 1.35202 * 125.48339 * 0.02562 * 3 2 1 5 5 N 1.31545 * 109.03035 * 180.02562 * 3 2 1 6 6 C 1.33198 * 109.77346 * 359.76737 * 5 3 2 7 7 C 1.36849 * 107.95049 * 0.37692 * 6 5 3 8 8 C 1.46263 * 126.83015 * 179.89489 * 7 6 5 9 9 O 1.21782 * 119.99865 * 187.68274 * 8 7 6 10 10 N 1.34771 * 120.00356 * 7.68216 * 8 7 6 11 11 C 1.36912 * 119.99764 * 6.59457 * 10 8 7 12 12 H 1.08002 * 119.99506 * 244.96550 * 11 10 8 13 13 C 1.38979 * 119.99969 * 64.96466 * 11 10 8 14 14 N 1.31420 * 120.00062 * 355.24990 * 13 11 10 15 15 Si 1.86799 * 120.00056 * 175.25214 * 13 11 10 16 16 H 1.48505 * 109.47125 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47133 * 119.99428 * 15 13 11 18 18 H 1.48497 * 109.47475 * 240.00170 * 15 13 11 19 19 C 1.46502 * 120.00299 * 186.59485 * 10 8 7 20 20 C 1.55233 * 110.46591 * 229.83234 * 19 10 8 21 21 C 1.54892 * 102.58964 * 203.39306 * 20 19 10 22 22 C 1.54267 * 104.31083 * 37.93229 * 21 20 19 23 23 C 1.53884 * 106.59754 * 336.32521 * 22 21 20 24 24 H 1.09005 * 109.46698 * 274.88110 * 1 2 3 25 25 H 1.08997 * 109.47191 * 34.87409 * 1 2 3 26 26 H 1.08992 * 109.47219 * 154.87782 * 1 2 3 27 27 H 0.96698 * 114.00083 * 89.99127 * 4 3 2 28 28 H 1.07998 * 126.02716 * 180.25883 * 6 5 3 29 29 H 0.96995 * 119.99480 * 180.02562 * 14 13 11 30 30 H 1.08999 * 110.43353 * 352.47987 * 19 10 8 31 31 H 1.09002 * 110.89862 * 85.09982 * 20 19 10 32 32 H 1.09004 * 110.76939 * 321.62680 * 20 19 10 33 33 H 1.08999 * 110.48375 * 279.19083 * 21 20 19 34 34 H 1.08999 * 110.48810 * 156.67801 * 21 20 19 35 35 H 1.08994 * 110.03112 * 95.61031 * 22 21 20 36 36 H 1.08998 * 110.03033 * 216.99903 * 22 21 20 37 37 H 1.09004 * 110.03094 * 119.28357 * 23 22 21 38 38 H 1.09000 * 110.02927 * 240.66351 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2689 1.0844 0.0000 4 8 1.8518 2.3705 0.0005 5 7 3.5234 0.6885 -0.0006 6 6 3.5758 -0.6425 0.0042 7 6 2.2915 -1.1152 -0.0007 8 6 1.8731 -2.5167 -0.0002 9 8 0.6980 -2.8013 -0.1459 10 7 2.7879 -3.4931 0.1614 11 6 4.0853 -3.1730 0.4594 12 1 4.8724 -3.3979 -0.2451 13 6 4.3893 -2.5587 1.6685 14 7 3.4236 -2.2005 2.4847 15 14 6.1706 -2.2422 2.1334 16 1 7.0599 -2.7354 1.0511 17 1 6.3817 -0.7843 2.3209 18 1 6.4865 -2.9548 3.3974 19 6 2.3942 -4.8969 0.0181 20 6 2.8908 -5.7266 1.2325 21 6 2.9489 -7.1639 0.6583 22 6 3.4566 -6.9772 -0.7864 23 6 3.1039 -5.5357 -1.1934 24 1 -0.3633 0.0874 1.0240 25 1 -0.3633 0.8431 -0.5876 26 1 -0.3633 -0.9304 -0.4363 27 1 1.7307 2.7444 0.8840 28 1 4.4735 -1.2428 0.0089 29 1 3.6358 -1.7715 3.3283 30 1 1.3124 -4.9799 -0.0860 31 1 2.1822 -5.6689 2.0587 32 1 3.8807 -5.3962 1.5475 33 1 1.9566 -7.6152 0.6586 34 1 3.6454 -7.7759 1.2314 35 1 4.5361 -7.1224 -0.8244 36 1 2.9612 -7.6853 -1.4507 37 1 4.0124 -4.9814 -1.4290 38 1 2.4375 -5.5438 -2.0560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601206422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:34 Heat of formation + Delta-G solvation = -25.935281 kcal Electronic energy + Delta-G solvation = -23126.006640 eV Core-core repulsion = 19776.411838 eV Total energy + Delta-G solvation = -3349.594802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.94774 -40.49640 -38.40962 -37.96610 -36.28060 -34.71117 -33.32816 -30.34159 -29.42380 -28.25406 -27.75066 -26.92035 -23.75457 -22.42547 -21.36437 -21.13564 -20.97224 -19.44417 -18.52154 -17.62678 -17.35736 -17.11640 -16.59040 -16.04639 -16.02292 -15.32101 -15.18086 -14.90167 -14.60825 -14.29394 -14.10014 -13.63023 -13.51998 -13.29582 -13.14952 -12.99832 -12.66939 -12.56925 -12.17494 -11.98904 -11.94150 -11.81057 -11.37525 -11.11509 -11.09241 -10.74377 -10.57686 -10.38850 -9.26783 -8.87999 -8.27798 -6.25915 0.54769 1.42873 1.46904 1.52837 1.61005 1.94311 2.29515 2.78483 2.98141 3.05445 3.13523 3.92768 3.95013 3.97728 4.13544 4.27668 4.31763 4.53332 4.62261 4.69049 4.74601 4.81955 4.83722 4.95563 4.96914 5.10505 5.20301 5.23631 5.29865 5.44697 5.54565 5.56581 5.65722 5.82274 5.84838 6.16665 6.65991 6.76403 6.99395 7.06789 7.58246 8.05401 8.74821 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.007917 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.631929 B = 3535.686677 C = 4595.120075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.443 5.443 3 C 0.367 3.633 4 O -0.439 6.439 5 N -0.531 5.531 6 C 0.058 3.942 7 C -0.039 4.039 8 C 0.572 3.428 9 O -0.641 6.641 10 N -0.435 5.435 11 C -0.360 4.360 12 H 0.092 0.908 13 C 0.040 3.960 14 N -0.872 5.872 15 Si 0.951 3.049 16 H -0.244 1.244 17 H -0.283 1.283 18 H -0.278 1.278 19 C 0.128 3.872 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.108 4.108 23 C -0.125 4.125 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.418 0.582 28 H 0.200 0.800 29 H 0.268 0.732 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -1.710 -2.047 2.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.138 5.138 3 C 0.069 3.931 4 O -0.242 6.242 5 N -0.261 5.261 6 C -0.093 4.093 7 C -0.154 4.154 8 C 0.364 3.636 9 O -0.531 6.531 10 N -0.152 5.152 11 C -0.488 4.488 12 H 0.110 0.890 13 C -0.169 4.169 14 N -0.504 5.504 15 Si 0.775 3.225 16 H -0.167 1.167 17 H -0.208 1.208 18 H -0.204 1.204 19 C 0.025 3.975 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.163 4.163 24 H 0.098 0.902 25 H 0.128 0.872 26 H 0.106 0.894 27 H 0.277 0.723 28 H 0.216 0.784 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.678 -1.207 -2.537 2.890 hybrid contribution -0.309 0.204 1.309 1.361 sum -0.987 -1.003 -1.228 1.868 Atomic orbital electron populations 1.22244 0.74931 1.05688 1.04141 1.45657 1.08741 1.05619 1.53771 1.20234 0.84765 0.81901 1.06233 1.84708 1.87014 1.16802 1.35717 1.70260 1.17561 1.14245 1.24080 1.23700 0.97855 0.88280 0.99478 1.20466 0.91008 0.88061 1.15841 1.17253 0.85018 0.84405 0.76952 1.90538 1.19056 1.84833 1.58670 1.42938 1.08440 1.02656 1.61148 1.19199 0.83711 1.43765 1.02110 0.89023 1.26256 1.01272 0.94318 0.95011 1.69983 1.33975 1.36213 1.10268 0.85517 0.79673 0.78014 0.79326 1.16709 1.20838 1.20352 1.22085 0.97605 0.81839 0.96011 1.22580 1.01074 0.95253 0.96048 1.22283 1.01550 0.95119 0.96267 1.22005 1.01543 0.94819 0.96224 1.22365 1.00309 0.96980 0.96656 0.90186 0.87208 0.89447 0.72284 0.78351 0.92258 0.92247 0.94607 0.91258 0.91336 0.90279 0.90902 0.90319 0.91743 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.44 10.84 127.77 1.39 3.83 16 2 N -0.44 -18.91 3.20 -651.95 -2.09 -21.00 16 3 C 0.37 14.95 9.01 179.97 1.62 16.58 16 4 O -0.44 -13.44 13.53 -84.82 -1.15 -14.59 16 5 N -0.53 -24.47 11.22 -313.53 -3.52 -27.98 16 6 C 0.06 2.81 9.07 84.16 0.76 3.58 16 7 C -0.04 -1.92 5.99 39.80 0.24 -1.68 16 8 C 0.57 29.87 6.91 86.33 0.60 30.47 16 9 O -0.64 -34.98 14.18 -4.61 -0.07 -35.05 16 10 N -0.43 -21.07 2.40 -611.83 -1.47 -22.54 16 11 C -0.36 -16.94 4.52 84.08 0.38 -16.56 16 12 H 0.09 4.14 7.24 -2.91 -0.02 4.11 16 13 C 0.04 1.88 3.20 84.93 0.27 2.15 16 14 N -0.87 -45.28 11.86 21.67 0.26 -45.03 16 15 Si 0.95 38.27 28.78 68.60 1.97 40.24 16 16 H -0.24 -9.07 7.11 99.48 0.71 -8.36 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 19 C 0.13 5.43 3.26 46.18 0.15 5.58 16 20 C -0.11 -4.28 6.39 32.01 0.20 -4.08 16 21 C -0.11 -3.23 6.82 31.67 0.22 -3.02 16 22 C -0.11 -2.90 6.80 31.32 0.21 -2.68 16 23 C -0.12 -4.30 6.43 31.32 0.20 -4.10 16 24 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 25 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.09 3.40 6.14 -2.39 -0.01 3.38 16 27 H 0.42 8.25 9.06 -74.06 -0.67 7.58 16 28 H 0.20 9.61 3.99 -2.91 -0.01 9.60 16 29 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 30 H 0.06 2.74 7.00 -2.39 -0.02 2.72 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 2.89 7.00 -2.38 -0.02 2.88 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 2.34 6.94 -2.39 -0.02 2.32 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -65.19 306.55 0.61 -64.57 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.43 Total: 31.31 kcal Atomic # 6 Polarization: 23.83 SS G_CDS: 6.24 Total: 30.07 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -6.82 Total: -116.55 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -1.21 Total: -49.64 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.97 Total: 40.24 kcal Total: -65.19 0.61 -64.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.639 kcal (2) G-P(sol) polarization free energy of solvation -65.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds