Wall clock time and date at job start Tue Mar 31 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34946 * 126.54484 * 2 1 4 4 O 1.35204 * 125.49467 * 359.97438 * 3 2 1 5 5 N 1.31539 * 109.01201 * 180.02562 * 3 2 1 6 6 C 1.33219 * 109.76044 * 359.97438 * 5 3 2 7 7 C 1.36720 * 107.96889 * 359.97438 * 6 5 3 8 8 C 1.46370 * 126.82753 * 179.97438 * 7 6 5 9 9 O 1.21739 * 119.99884 * 208.69675 * 8 7 6 10 10 N 1.34774 * 120.00557 * 28.69523 * 8 7 6 11 11 C 1.46927 * 120.62671 * 9.11172 * 10 8 7 12 12 C 1.53623 * 108.54016 * 126.37176 * 11 10 8 13 13 C 1.53042 * 109.24532 * 54.86008 * 12 11 10 14 14 C 1.50694 * 109.45172 * 178.49798 * 13 12 11 15 15 H 1.08007 * 119.99994 * 120.06254 * 14 13 12 16 16 C 1.37872 * 119.99996 * 300.05608 * 14 13 12 17 17 N 1.31511 * 120.00131 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99993 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47010 * 60.00461 * 18 16 14 20 20 H 1.48503 * 109.47020 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47430 * 300.00375 * 18 16 14 22 22 C 1.53042 * 109.53220 * 298.51080 * 13 12 11 23 23 C 1.46929 * 120.63516 * 189.40153 * 10 8 7 24 24 H 1.08995 * 109.47166 * 264.38076 * 1 2 3 25 25 H 1.09005 * 109.46790 * 24.37576 * 1 2 3 26 26 H 1.08998 * 109.47130 * 144.37665 * 1 2 3 27 27 H 0.96703 * 113.99438 * 90.00078 * 4 3 2 28 28 H 1.08007 * 126.01488 * 180.26346 * 6 5 3 29 29 H 1.08994 * 109.59367 * 246.20391 * 11 10 8 30 30 H 1.09001 * 109.58990 * 6.63270 * 11 10 8 31 31 H 1.09001 * 109.64139 * 294.86569 * 12 11 10 32 32 H 1.09007 * 109.43567 * 174.72888 * 12 11 10 33 33 H 1.09001 * 109.45867 * 58.52443 * 13 12 11 34 34 H 0.96998 * 120.00136 * 179.97438 * 17 16 14 35 35 H 1.08993 * 109.50339 * 301.40746 * 22 13 12 36 36 H 1.09004 * 109.49583 * 181.31206 * 22 13 12 37 37 H 1.08995 * 109.58150 * 353.36499 * 23 10 8 38 38 H 1.08994 * 109.58677 * 113.65274 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2686 1.0841 0.0000 4 8 1.8517 2.3703 -0.0005 5 7 3.5229 0.6879 -0.0006 6 6 3.5747 -0.6433 -0.0004 7 6 2.2915 -1.1153 0.0009 8 6 1.8726 -2.5178 0.0010 9 8 0.8117 -2.8362 -0.5041 10 7 2.6613 -3.4567 0.5603 11 6 3.8418 -3.0717 1.3457 12 6 3.7550 -3.7489 2.7219 13 6 3.5922 -5.2587 2.5319 14 6 3.5436 -5.9318 3.8792 15 1 2.6737 -6.5042 4.1659 16 6 4.6096 -5.8170 4.7460 17 7 5.6687 -5.1197 4.3972 18 14 4.5497 -6.6519 6.4160 19 1 4.3936 -8.1171 6.2315 20 1 5.8095 -6.3767 7.1525 21 1 3.3982 -6.1253 7.1918 22 6 2.2935 -5.5418 1.7733 23 6 2.3605 -4.8849 0.3910 24 1 -0.3633 -0.1006 1.0227 25 1 -0.3633 0.9361 -0.4242 26 1 -0.3633 -0.8353 -0.5986 27 1 1.7301 2.7446 0.8828 28 1 4.4723 -1.2439 0.0033 29 1 4.7455 -3.3981 0.8312 30 1 3.8607 -1.9890 1.4703 31 1 2.8982 -3.3567 3.2699 32 1 4.6682 -3.5492 3.2827 33 1 4.4371 -5.6462 1.9625 34 1 6.4185 -5.0386 5.0071 35 1 1.4504 -5.1328 2.3300 36 1 2.1664 -6.6183 1.6587 37 1 1.4017 -4.9988 -0.1146 38 1 3.1446 -5.3556 -0.2020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601422297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:28 Heat of formation + Delta-G solvation = -4.314117 kcal Electronic energy + Delta-G solvation = -22252.117795 eV Core-core repulsion = 18903.460557 eV Total energy + Delta-G solvation = -3348.657238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32715 -39.49330 -37.49947 -36.85020 -34.28448 -33.52423 -31.62139 -30.29687 -28.99248 -27.19174 -26.28283 -23.80634 -22.62720 -22.02814 -21.53252 -19.92214 -18.82299 -18.46225 -16.92854 -16.80997 -16.16034 -15.97336 -15.54779 -14.65888 -14.60200 -14.39982 -13.92201 -13.63323 -13.12885 -12.97995 -12.82845 -12.78240 -12.60054 -12.35718 -12.24586 -11.63186 -11.25140 -10.94992 -10.70386 -10.44730 -10.34658 -10.13130 -9.86401 -9.76909 -9.57128 -9.21980 -8.99894 -8.50491 -8.41152 -8.05649 -6.05686 -4.12006 1.23833 2.06649 2.63312 3.24938 3.28011 3.33207 3.35804 3.45022 3.68836 4.38677 4.58443 4.64251 4.97725 5.02596 5.23926 5.28920 5.40210 5.54373 5.73287 5.83065 5.91433 6.02121 6.06897 6.26047 6.30849 6.34777 6.41733 6.59028 6.81905 6.97658 7.08254 7.23167 7.35739 7.61915 7.71012 7.77207 7.88086 8.00275 8.34496 8.36844 8.90981 9.53302 10.99829 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024854 B = 0.004522 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.289175 B = 6190.435633 C = 6718.212045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.431 5.431 3 C 0.386 3.614 4 O -0.441 6.441 5 N -0.486 5.486 6 C 0.050 3.950 7 C -0.064 4.064 8 C 0.589 3.411 9 O -0.560 6.560 10 N -0.583 5.583 11 C 0.087 3.913 12 C -0.122 4.122 13 C 0.048 3.952 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.123 4.123 23 C 0.114 3.886 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.403 0.597 28 H 0.192 0.808 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.106 0.894 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 10.139 -6.932 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.124 5.124 3 C 0.087 3.913 4 O -0.242 6.242 5 N -0.215 5.215 6 C -0.104 4.104 7 C -0.181 4.181 8 C 0.377 3.623 9 O -0.441 6.441 10 N -0.314 5.314 11 C -0.035 4.035 12 C -0.161 4.161 13 C 0.029 3.971 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.161 4.161 23 C -0.007 4.007 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.260 0.740 28 H 0.209 0.791 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.454 10.609 -7.715 14.620 hybrid contribution -0.744 -0.687 1.560 1.860 sum -7.199 9.922 -6.155 13.717 Atomic orbital electron populations 1.22256 0.75497 1.05603 1.04440 1.45617 1.08263 1.05626 1.52894 1.20203 0.84571 0.81283 1.05210 1.84799 1.87069 1.18095 1.34224 1.70312 1.16340 1.12884 1.21956 1.22811 0.95887 0.89876 1.01822 1.20711 0.91165 0.88411 1.17776 1.16657 0.83793 0.83014 0.78867 1.90755 1.22728 1.82151 1.48434 1.47944 1.27617 1.06301 1.49530 1.22630 0.86114 1.00342 0.94402 1.22101 1.03537 0.97995 0.92422 1.18651 0.91528 0.91921 0.94968 1.21153 1.02171 1.31406 1.00481 0.92775 1.24944 0.95389 0.95251 0.98263 1.69811 1.06178 1.40519 1.36471 0.86685 0.77238 0.80069 0.84165 1.20293 1.21276 1.20397 1.22011 1.01277 0.99115 0.93695 1.21781 1.01230 0.78491 0.99218 0.90217 0.89133 0.87663 0.74023 0.79103 0.91312 0.90090 0.94331 0.87564 0.95280 0.92850 0.92917 0.91935 0.90167 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 10.84 59.85 0.65 1.32 16 2 N -0.43 -5.88 3.20 -122.12 -0.39 -6.27 16 3 C 0.39 5.21 9.01 -89.59 -0.81 4.40 16 4 O -0.44 -4.45 13.44 -17.31 -0.23 -4.69 16 5 N -0.49 -7.45 11.22 -14.62 -0.16 -7.61 16 6 C 0.05 0.74 9.47 -17.50 -0.17 0.57 16 7 C -0.06 -1.01 6.32 -81.98 -0.52 -1.52 16 8 C 0.59 10.25 7.50 -12.99 -0.10 10.15 16 9 O -0.56 -10.73 14.82 5.15 0.08 -10.65 16 10 N -0.58 -10.10 2.97 -174.16 -0.52 -10.61 16 11 C 0.09 1.49 5.14 -3.49 -0.02 1.47 16 12 C -0.12 -2.61 5.17 -26.39 -0.14 -2.75 16 13 C 0.05 1.10 2.06 -91.73 -0.19 0.91 16 14 C -0.51 -13.37 8.56 -34.44 -0.29 -13.66 16 15 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -23.93 11.30 55.43 0.63 -23.30 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 23 C 0.11 1.98 6.44 -3.71 -0.02 1.95 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.09 0.71 8.02 -51.93 -0.42 0.29 16 26 H 0.10 1.26 6.68 -51.93 -0.35 0.92 16 27 H 0.40 1.94 9.06 45.56 0.41 2.35 16 28 H 0.19 2.49 6.48 -52.48 -0.34 2.15 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.28 4.46 -51.93 -0.23 1.05 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 2.54 6.03 -51.93 -0.31 2.23 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.37 7.01 -51.93 -0.36 1.00 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -31.19 309.70 -6.89 -38.08 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.10 Total: 3.05 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.84 Total: 1.84 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.45 Total: -47.80 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.16 Total: -15.34 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.19 -6.89 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.771 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds