Wall clock time and date at job start Tue Mar 31 2020 01:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34946 * 126.54484 * 2 1 4 4 O 1.35204 * 125.49467 * 359.97438 * 3 2 1 5 5 N 1.31539 * 109.01201 * 180.02562 * 3 2 1 6 6 C 1.33219 * 109.76044 * 359.97438 * 5 3 2 7 7 C 1.36720 * 107.96889 * 359.97438 * 6 5 3 8 8 C 1.46370 * 126.82753 * 179.97438 * 7 6 5 9 9 O 1.21739 * 119.99884 * 208.69675 * 8 7 6 10 10 N 1.34774 * 120.00557 * 28.69523 * 8 7 6 11 11 C 1.46927 * 120.62671 * 9.11172 * 10 8 7 12 12 C 1.53623 * 108.54016 * 126.37176 * 11 10 8 13 13 C 1.53042 * 109.24532 * 54.86008 * 12 11 10 14 14 C 1.50694 * 109.45172 * 178.49798 * 13 12 11 15 15 H 1.08007 * 119.99994 * 120.06254 * 14 13 12 16 16 C 1.37872 * 119.99996 * 300.05608 * 14 13 12 17 17 N 1.31511 * 120.00131 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99993 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47010 * 60.00461 * 18 16 14 20 20 H 1.48503 * 109.47020 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47430 * 300.00375 * 18 16 14 22 22 C 1.53042 * 109.53220 * 298.51080 * 13 12 11 23 23 C 1.46929 * 120.63516 * 189.40153 * 10 8 7 24 24 H 1.08995 * 109.47166 * 264.38076 * 1 2 3 25 25 H 1.09005 * 109.46790 * 24.37576 * 1 2 3 26 26 H 1.08998 * 109.47130 * 144.37665 * 1 2 3 27 27 H 0.96703 * 113.99438 * 90.00078 * 4 3 2 28 28 H 1.08007 * 126.01488 * 180.26346 * 6 5 3 29 29 H 1.08994 * 109.59367 * 246.20391 * 11 10 8 30 30 H 1.09001 * 109.58990 * 6.63270 * 11 10 8 31 31 H 1.09001 * 109.64139 * 294.86569 * 12 11 10 32 32 H 1.09007 * 109.43567 * 174.72888 * 12 11 10 33 33 H 1.09001 * 109.45867 * 58.52443 * 13 12 11 34 34 H 0.96998 * 120.00136 * 179.97438 * 17 16 14 35 35 H 1.08993 * 109.50339 * 301.40746 * 22 13 12 36 36 H 1.09004 * 109.49583 * 181.31206 * 22 13 12 37 37 H 1.08995 * 109.58150 * 353.36499 * 23 10 8 38 38 H 1.08994 * 109.58677 * 113.65274 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2686 1.0841 0.0000 4 8 1.8517 2.3703 -0.0005 5 7 3.5229 0.6879 -0.0006 6 6 3.5747 -0.6433 -0.0004 7 6 2.2915 -1.1153 0.0009 8 6 1.8726 -2.5178 0.0010 9 8 0.8117 -2.8362 -0.5041 10 7 2.6613 -3.4567 0.5603 11 6 3.8418 -3.0717 1.3457 12 6 3.7550 -3.7489 2.7219 13 6 3.5922 -5.2587 2.5319 14 6 3.5436 -5.9318 3.8792 15 1 2.6737 -6.5042 4.1659 16 6 4.6096 -5.8170 4.7460 17 7 5.6687 -5.1197 4.3972 18 14 4.5497 -6.6519 6.4160 19 1 4.3936 -8.1171 6.2315 20 1 5.8095 -6.3767 7.1525 21 1 3.3982 -6.1253 7.1918 22 6 2.2935 -5.5418 1.7733 23 6 2.3605 -4.8849 0.3910 24 1 -0.3633 -0.1006 1.0227 25 1 -0.3633 0.9361 -0.4242 26 1 -0.3633 -0.8353 -0.5986 27 1 1.7301 2.7446 0.8828 28 1 4.4723 -1.2439 0.0033 29 1 4.7455 -3.3981 0.8312 30 1 3.8607 -1.9890 1.4703 31 1 2.8982 -3.3567 3.2699 32 1 4.6682 -3.5492 3.2827 33 1 4.4371 -5.6462 1.9625 34 1 6.4185 -5.0386 5.0071 35 1 1.4504 -5.1328 2.3300 36 1 2.1664 -6.6183 1.6587 37 1 1.4017 -4.9988 -0.1146 38 1 3.1446 -5.3556 -0.2020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601422297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:27 Heat of formation + Delta-G solvation = -27.425977 kcal Electronic energy + Delta-G solvation = -22253.120001 eV Core-core repulsion = 18903.460557 eV Total energy + Delta-G solvation = -3349.659443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.40288 -40.86752 -38.49020 -38.26477 -35.55916 -35.01685 -33.27992 -31.88271 -30.24727 -28.11342 -27.99189 -25.35676 -24.09411 -23.40178 -22.64565 -21.38122 -20.09007 -19.55734 -18.53140 -17.86821 -17.82976 -17.19134 -16.75995 -16.47593 -15.93853 -15.35505 -15.13966 -15.04117 -14.68299 -14.49462 -14.31357 -13.93270 -13.75243 -13.66238 -13.25348 -13.16582 -12.92220 -12.76960 -12.47218 -12.12567 -11.94950 -11.51875 -11.40084 -11.03131 -10.99065 -10.90945 -10.72610 -10.36966 -9.73903 -9.43189 -8.05347 -6.18082 0.12740 1.03393 1.44046 1.45168 1.51935 1.54783 1.98876 2.17422 2.46100 2.78694 3.21499 3.37442 3.78651 3.91042 4.11445 4.22389 4.25807 4.31591 4.38535 4.49057 4.58287 4.60231 4.73413 4.86280 4.92008 4.99284 5.21438 5.23619 5.29172 5.44205 5.53161 5.57347 5.66561 6.02080 6.14894 6.36231 6.42684 6.54176 6.65852 6.91237 6.99807 7.49507 8.97808 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024854 B = 0.004522 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.289175 B = 6190.435633 C = 6718.212045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.432 5.432 3 C 0.402 3.598 4 O -0.438 6.438 5 N -0.514 5.514 6 C 0.055 3.945 7 C -0.091 4.091 8 C 0.593 3.407 9 O -0.581 6.581 10 N -0.586 5.586 11 C 0.101 3.899 12 C -0.113 4.113 13 C 0.044 3.956 14 C -0.536 4.536 15 H 0.047 0.953 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.277 1.277 22 C -0.113 4.113 23 C 0.120 3.880 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.428 0.572 28 H 0.204 0.796 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.010 0.990 34 H 0.262 0.738 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 11.277 -7.213 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.126 5.126 3 C 0.103 3.897 4 O -0.242 6.242 5 N -0.244 5.244 6 C -0.099 4.099 7 C -0.207 4.207 8 C 0.382 3.618 9 O -0.463 6.463 10 N -0.317 5.317 11 C -0.020 4.020 12 C -0.152 4.152 13 C 0.026 3.974 14 C -0.574 4.574 15 H 0.065 0.935 16 C -0.179 4.179 17 N -0.549 5.549 18 Si 0.772 3.228 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.202 1.202 22 C -0.151 4.151 23 C -0.002 4.002 24 H 0.110 0.890 25 H 0.138 0.862 26 H 0.106 0.894 27 H 0.290 0.710 28 H 0.221 0.779 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.948 11.762 -7.981 15.821 hybrid contribution -0.643 -0.954 1.652 2.013 sum -7.591 10.808 -6.329 14.646 Atomic orbital electron populations 1.22433 0.73853 1.06450 1.05171 1.45783 1.09266 1.05061 1.52443 1.20316 0.84242 0.82219 1.02972 1.84769 1.86690 1.16272 1.36490 1.70331 1.17530 1.13004 1.23490 1.23037 0.96079 0.90042 1.00701 1.20487 0.91913 0.88063 1.20227 1.16820 0.83183 0.83657 0.78168 1.90739 1.23575 1.82644 1.49355 1.47920 1.27668 1.06385 1.49697 1.22461 0.86638 1.00890 0.92030 1.21863 1.01411 0.97339 0.94568 1.18629 0.92357 0.92605 0.93814 1.21521 1.02014 1.31748 1.02121 0.93515 1.25588 0.95241 0.95882 1.01200 1.69922 1.06488 1.41203 1.37330 0.85815 0.77185 0.79211 0.80620 1.19940 1.20909 1.20240 1.21852 0.98900 0.99744 0.94626 1.21712 1.02186 0.78576 0.97692 0.89003 0.86236 0.89378 0.70997 0.77936 0.90030 0.88351 0.95900 0.90086 0.97216 0.92914 0.94161 0.91382 0.89634 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.17 10.84 127.77 1.39 2.55 16 2 N -0.43 -10.96 3.20 -651.99 -2.09 -13.04 16 3 C 0.40 9.87 9.01 179.99 1.62 11.49 16 4 O -0.44 -7.44 13.44 -84.84 -1.14 -8.58 16 5 N -0.51 -14.77 11.22 -313.65 -3.52 -18.29 16 6 C 0.06 1.55 9.47 84.13 0.80 2.35 16 7 C -0.09 -2.71 6.32 39.80 0.25 -2.46 16 8 C 0.59 20.00 7.50 86.36 0.65 20.65 16 9 O -0.58 -21.80 14.82 -4.47 -0.07 -21.87 16 10 N -0.59 -19.73 2.97 -823.11 -2.44 -22.17 16 11 C 0.10 3.40 5.14 86.51 0.44 3.84 16 12 C -0.11 -4.89 5.17 30.82 0.16 -4.73 16 13 C 0.04 2.06 2.06 -11.51 -0.02 2.04 16 14 C -0.54 -28.26 8.56 25.60 0.22 -28.04 16 15 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 16 C 0.02 1.06 5.30 84.65 0.45 1.51 16 17 N -0.91 -49.35 11.30 21.45 0.24 -49.11 16 18 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 C -0.11 -4.43 5.30 30.67 0.16 -4.26 16 23 C 0.12 4.03 6.44 86.36 0.56 4.59 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.12 1.51 8.02 -2.38 -0.02 1.49 16 26 H 0.09 2.02 6.68 -2.39 -0.02 2.00 16 27 H 0.43 2.59 9.06 -74.06 -0.67 1.92 16 28 H 0.20 4.94 6.48 -2.91 -0.02 4.93 16 29 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.10 2.98 4.46 -2.39 -0.01 2.97 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 3.94 6.03 -2.38 -0.01 3.93 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.09 2.82 7.01 -2.39 -0.02 2.80 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -66.48 309.70 0.11 -66.38 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.43 Total: 12.95 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.67 Total: 9.53 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -7.81 Total: -102.61 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.21 Total: -30.44 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -66.48 0.11 -66.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.950 kcal (2) G-P(sol) polarization free energy of solvation -66.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds