Wall clock time and date at job start Tue Mar 31 2020 01:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.54209 * 2 1 4 4 O 1.35212 * 125.49486 * 359.97438 * 3 2 1 5 5 N 1.31532 * 109.01610 * 180.26761 * 3 2 1 6 6 C 1.33232 * 109.76075 * 359.72428 * 5 3 2 7 7 C 1.36724 * 107.96030 * 359.97438 * 6 5 3 8 8 C 1.46374 * 126.82378 * 179.97438 * 7 6 5 9 9 O 1.21733 * 119.99854 * 205.76473 * 8 7 6 10 10 N 1.34773 * 119.99903 * 25.77461 * 8 7 6 11 11 C 1.46930 * 120.63177 * 0.87007 * 10 8 7 12 12 C 1.53189 * 108.77206 * 126.43670 * 11 10 8 13 13 C 1.53037 * 109.31577 * 54.63794 * 12 11 10 14 14 C 1.53036 * 109.53760 * 298.63121 * 13 12 11 15 15 H 1.09006 * 109.49861 * 301.37943 * 14 13 12 16 16 C 1.50696 * 109.49976 * 181.31621 * 14 13 12 17 17 H 1.08002 * 120.00018 * 0.06642 * 16 14 13 18 18 C 1.37880 * 120.00218 * 179.78449 * 16 14 13 19 19 N 1.31517 * 119.99858 * 0.28445 * 18 16 14 20 20 Si 1.86797 * 120.00158 * 180.27490 * 18 16 14 21 21 H 1.48498 * 109.47270 * 60.00646 * 20 18 16 22 22 H 1.48500 * 109.47085 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47230 * 300.00638 * 20 18 16 24 24 C 1.46936 * 120.60580 * 180.89554 * 10 8 7 25 25 H 1.09005 * 109.47666 * 264.67794 * 1 2 3 26 26 H 1.09000 * 109.47357 * 24.68072 * 1 2 3 27 27 H 1.09003 * 109.46795 * 144.67784 * 1 2 3 28 28 H 0.96699 * 114.00208 * 270.34731 * 4 3 2 29 29 H 1.07993 * 126.02135 * 179.97438 * 6 5 3 30 30 H 1.08991 * 109.58403 * 6.64780 * 11 10 8 31 31 H 1.09001 * 109.58328 * 246.22196 * 11 10 8 32 32 H 1.09001 * 109.50047 * 294.67862 * 12 11 10 33 33 H 1.09005 * 109.49432 * 174.58412 * 12 11 10 34 34 H 1.09006 * 109.46072 * 178.61040 * 13 12 11 35 35 H 1.09001 * 109.45360 * 58.64858 * 13 12 11 36 36 H 0.96995 * 120.00066 * 179.97438 * 19 18 16 37 37 H 1.08994 * 109.56349 * 113.75841 * 24 10 8 38 38 H 1.09007 * 109.61392 * 353.33037 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8515 2.3704 -0.0005 5 7 3.5227 0.6881 -0.0058 6 6 3.5747 -0.6432 -0.0037 7 6 2.2915 -1.1152 0.0044 8 6 1.8727 -2.5177 0.0088 9 8 0.7861 -2.8299 -0.4427 10 7 2.6899 -3.4635 0.5130 11 6 3.9962 -3.0999 1.0789 12 6 4.0959 -3.6724 2.4963 13 6 3.8264 -5.1783 2.4541 14 6 2.4109 -5.4304 1.9300 15 1 1.6892 -4.9306 2.5762 16 6 2.1349 -6.9118 1.9192 17 1 2.8927 -7.6048 2.2539 18 6 0.9128 -7.3823 1.4877 19 7 -0.0100 -6.5386 1.0802 20 14 0.5680 -9.2182 1.4817 21 1 0.6891 -9.7492 2.8632 22 1 -0.8069 -9.4619 0.9761 23 1 1.5476 -9.9030 0.6005 24 6 2.2912 -4.8777 0.5063 25 1 -0.3634 -0.0953 1.0232 26 1 -0.3634 0.9338 -0.4291 27 1 -0.3633 -0.8385 -0.5942 28 1 1.7254 2.7427 -0.8840 29 1 4.4722 -1.2438 -0.0076 30 1 4.0890 -2.0146 1.1158 31 1 4.7911 -3.5159 0.4600 32 1 3.3585 -3.1886 3.1369 33 1 5.0957 -3.4928 2.8917 34 1 3.9211 -5.5924 3.4580 35 1 4.5489 -5.6580 1.7938 36 1 -0.8696 -6.8696 0.7762 37 1 2.9467 -5.4386 -0.1598 38 1 1.2593 -4.9653 0.1659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601664597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:31 Heat of formation + Delta-G solvation = 5.463501 kcal Electronic energy + Delta-G solvation = -22435.568624 eV Core-core repulsion = 19087.335376 eV Total energy + Delta-G solvation = -3348.233248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.28175 -39.26639 -37.44909 -36.73112 -34.22117 -33.40926 -31.85598 -30.28951 -28.90788 -27.14293 -25.13634 -25.01666 -22.29029 -22.12257 -21.42133 -19.79445 -18.77797 -18.40477 -16.97459 -16.57666 -16.23778 -15.82602 -15.05314 -14.74258 -14.48180 -14.28048 -14.05631 -13.47587 -13.29048 -12.82544 -12.76784 -12.70599 -12.56905 -12.22300 -12.12730 -11.84143 -10.99322 -10.86141 -10.54284 -10.39168 -10.25791 -10.22598 -9.92171 -9.76029 -9.45928 -9.15387 -8.97602 -8.46945 -8.41398 -7.81497 -6.03397 -4.12076 1.33314 2.21849 2.63821 3.29838 3.36020 3.37328 3.51085 3.67393 3.77726 4.40224 4.68374 4.74104 4.99091 5.19036 5.26698 5.30269 5.35996 5.49348 5.56022 5.70041 5.91651 6.01310 6.18661 6.30135 6.32494 6.42001 6.59666 6.64281 6.83586 6.94624 7.09170 7.18595 7.40775 7.58888 7.74780 7.82695 7.94277 8.14310 8.34190 8.69563 8.92030 9.53755 11.01987 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.004819 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.469014 B = 5808.589831 C = 6535.770965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.428 5.428 3 C 0.381 3.619 4 O -0.441 6.441 5 N -0.488 5.488 6 C 0.027 3.973 7 C -0.054 4.054 8 C 0.580 3.420 9 O -0.539 6.539 10 N -0.585 5.585 11 C 0.076 3.924 12 C -0.133 4.133 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.114 3.886 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.400 0.600 29 H 0.198 0.802 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.047 0.953 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 13.333 -2.882 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.121 5.121 3 C 0.082 3.918 4 O -0.241 6.241 5 N -0.217 5.217 6 C -0.126 4.126 7 C -0.171 4.171 8 C 0.366 3.634 9 O -0.418 6.418 10 N -0.317 5.317 11 C -0.047 4.047 12 C -0.171 4.171 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.006 4.006 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.257 0.743 29 H 0.215 0.785 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.334 13.751 -2.595 14.650 hybrid contribution -1.028 -1.277 -0.427 1.695 sum 3.305 12.474 -3.022 13.254 Atomic orbital electron populations 1.22266 0.75256 1.05206 1.04900 1.45638 1.08428 1.05634 1.52401 1.20189 0.84627 0.81249 1.05784 1.84824 1.87092 1.18188 1.34011 1.70281 1.16451 1.12903 1.22030 1.22942 0.96014 0.89913 1.03726 1.21031 0.91029 0.88876 1.16203 1.16696 0.84693 0.82565 0.79478 1.90820 1.21392 1.82006 1.47574 1.48247 1.17315 1.09058 1.57053 1.22510 0.85377 1.01508 0.95288 1.21933 1.00826 0.98611 0.95735 1.21641 1.00008 0.92657 1.00628 1.18968 0.91088 0.96040 0.91783 0.95317 1.21049 0.99414 0.91233 1.44263 0.92311 1.25052 0.96135 0.97816 0.94978 1.69871 1.05574 1.33880 1.42603 0.86639 0.77359 0.85514 0.78395 1.20268 1.21275 1.20196 1.22406 1.03771 0.73990 1.00393 0.90048 0.89571 0.87311 0.74293 0.78543 0.88505 0.91367 0.92225 0.91949 0.92972 0.93042 0.92597 0.93476 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 10.81 59.85 0.65 1.44 16 2 N -0.43 -6.27 3.20 -122.12 -0.39 -6.66 16 3 C 0.38 5.25 9.01 -89.60 -0.81 4.45 16 4 O -0.44 -4.59 13.44 -17.33 -0.23 -4.82 16 5 N -0.49 -7.35 11.22 -14.62 -0.16 -7.51 16 6 C 0.03 0.39 9.58 -17.49 -0.17 0.22 16 7 C -0.05 -0.90 6.55 -81.98 -0.54 -1.43 16 8 C 0.58 11.57 7.57 -12.99 -0.10 11.47 16 9 O -0.54 -12.56 14.70 5.16 0.08 -12.48 16 10 N -0.59 -11.48 2.97 -174.41 -0.52 -12.00 16 11 C 0.08 1.16 5.39 -3.71 -0.02 1.14 16 12 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 13 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 14 C 0.04 0.97 2.25 -91.66 -0.21 0.77 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -13.82 8.56 -34.44 -0.29 -14.12 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 19 N -0.88 -25.17 11.40 55.43 0.63 -24.54 16 20 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.11 2.67 5.41 -3.71 -0.02 2.65 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.09 0.72 8.03 -51.93 -0.42 0.31 16 27 H 0.11 1.52 6.63 -51.93 -0.34 1.18 16 28 H 0.40 1.96 9.06 45.56 0.41 2.37 16 29 H 0.20 2.35 5.75 -52.49 -0.30 2.05 16 30 H 0.10 1.31 3.41 -51.93 -0.18 1.13 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.12 3.39 5.13 -51.92 -0.27 3.13 16 LS Contribution 308.61 15.07 4.65 4.65 Total: -1.00 -32.90 308.61 -6.88 -39.78 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.02 Total: 4.07 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.90 Total: 3.63 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.44 Total: -50.71 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.16 Total: -17.30 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.90 -6.88 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601664597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.244 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds