Wall clock time and date at job start Tue Mar 31 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.54209 * 2 1 4 4 O 1.35212 * 125.49486 * 359.97438 * 3 2 1 5 5 N 1.31532 * 109.01610 * 180.26761 * 3 2 1 6 6 C 1.33232 * 109.76075 * 359.72428 * 5 3 2 7 7 C 1.36724 * 107.96030 * 359.97438 * 6 5 3 8 8 C 1.46374 * 126.82378 * 179.97438 * 7 6 5 9 9 O 1.21733 * 119.99854 * 205.76473 * 8 7 6 10 10 N 1.34773 * 119.99903 * 25.77461 * 8 7 6 11 11 C 1.46930 * 120.63177 * 0.87007 * 10 8 7 12 12 C 1.53189 * 108.77206 * 126.43670 * 11 10 8 13 13 C 1.53037 * 109.31577 * 54.63794 * 12 11 10 14 14 C 1.53036 * 109.53760 * 298.63121 * 13 12 11 15 15 H 1.09006 * 109.49861 * 301.37943 * 14 13 12 16 16 C 1.50696 * 109.49976 * 181.31621 * 14 13 12 17 17 H 1.08002 * 120.00018 * 0.06642 * 16 14 13 18 18 C 1.37880 * 120.00218 * 179.78449 * 16 14 13 19 19 N 1.31517 * 119.99858 * 0.28445 * 18 16 14 20 20 Si 1.86797 * 120.00158 * 180.27490 * 18 16 14 21 21 H 1.48498 * 109.47270 * 60.00646 * 20 18 16 22 22 H 1.48500 * 109.47085 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47230 * 300.00638 * 20 18 16 24 24 C 1.46936 * 120.60580 * 180.89554 * 10 8 7 25 25 H 1.09005 * 109.47666 * 264.67794 * 1 2 3 26 26 H 1.09000 * 109.47357 * 24.68072 * 1 2 3 27 27 H 1.09003 * 109.46795 * 144.67784 * 1 2 3 28 28 H 0.96699 * 114.00208 * 270.34731 * 4 3 2 29 29 H 1.07993 * 126.02135 * 179.97438 * 6 5 3 30 30 H 1.08991 * 109.58403 * 6.64780 * 11 10 8 31 31 H 1.09001 * 109.58328 * 246.22196 * 11 10 8 32 32 H 1.09001 * 109.50047 * 294.67862 * 12 11 10 33 33 H 1.09005 * 109.49432 * 174.58412 * 12 11 10 34 34 H 1.09006 * 109.46072 * 178.61040 * 13 12 11 35 35 H 1.09001 * 109.45360 * 58.64858 * 13 12 11 36 36 H 0.96995 * 120.00066 * 179.97438 * 19 18 16 37 37 H 1.08994 * 109.56349 * 113.75841 * 24 10 8 38 38 H 1.09007 * 109.61392 * 353.33037 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8515 2.3704 -0.0005 5 7 3.5227 0.6881 -0.0058 6 6 3.5747 -0.6432 -0.0037 7 6 2.2915 -1.1152 0.0044 8 6 1.8727 -2.5177 0.0088 9 8 0.7861 -2.8299 -0.4427 10 7 2.6899 -3.4635 0.5130 11 6 3.9962 -3.0999 1.0789 12 6 4.0959 -3.6724 2.4963 13 6 3.8264 -5.1783 2.4541 14 6 2.4109 -5.4304 1.9300 15 1 1.6892 -4.9306 2.5762 16 6 2.1349 -6.9118 1.9192 17 1 2.8927 -7.6048 2.2539 18 6 0.9128 -7.3823 1.4877 19 7 -0.0100 -6.5386 1.0802 20 14 0.5680 -9.2182 1.4817 21 1 0.6891 -9.7492 2.8632 22 1 -0.8069 -9.4619 0.9761 23 1 1.5476 -9.9030 0.6005 24 6 2.2912 -4.8777 0.5063 25 1 -0.3634 -0.0953 1.0232 26 1 -0.3634 0.9338 -0.4291 27 1 -0.3633 -0.8385 -0.5942 28 1 1.7254 2.7427 -0.8840 29 1 4.4722 -1.2438 -0.0076 30 1 4.0890 -2.0146 1.1158 31 1 4.7911 -3.5159 0.4600 32 1 3.3585 -3.1886 3.1369 33 1 5.0957 -3.4928 2.8917 34 1 3.9211 -5.5924 3.4580 35 1 4.5489 -5.6580 1.7938 36 1 -0.8696 -6.8696 0.7762 37 1 2.9467 -5.4386 -0.1598 38 1 1.2593 -4.9653 0.1659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601664597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:30 Heat of formation + Delta-G solvation = -20.456401 kcal Electronic energy + Delta-G solvation = -22436.692595 eV Core-core repulsion = 19087.335376 eV Total energy + Delta-G solvation = -3349.357220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.41658 -40.77247 -38.46023 -38.24590 -35.57142 -35.00946 -33.52562 -31.88561 -30.29795 -28.19683 -26.95365 -26.56328 -23.68418 -23.53024 -22.63401 -21.32161 -20.10284 -19.53664 -18.57681 -17.96986 -17.66889 -17.18644 -16.69425 -16.19052 -16.07289 -15.50820 -15.25167 -15.02506 -14.64957 -14.49702 -14.29568 -13.87145 -13.71636 -13.65766 -13.42258 -13.17143 -12.84258 -12.62229 -12.26651 -12.20653 -11.76531 -11.61034 -11.43073 -11.08273 -10.95174 -10.91843 -10.70306 -10.50697 -9.66349 -9.36141 -8.10451 -6.27246 0.15140 1.11451 1.42711 1.43798 1.51577 1.51954 2.11242 2.27237 2.43573 2.78174 3.17933 3.44851 3.78017 3.87066 4.08922 4.16832 4.20865 4.26549 4.36420 4.56105 4.61410 4.74878 4.80506 4.84457 4.96372 5.11636 5.22791 5.26537 5.29476 5.37385 5.53657 5.55203 5.63190 5.90412 5.99600 6.33050 6.52156 6.57697 6.66247 6.85199 7.17401 7.43077 8.92946 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.004819 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.469014 B = 5808.589831 C = 6535.770965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.434 5.434 3 C 0.402 3.598 4 O -0.438 6.438 5 N -0.506 5.506 6 C 0.051 3.949 7 C -0.089 4.089 8 C 0.576 3.424 9 O -0.588 6.588 10 N -0.590 5.590 11 C 0.073 3.927 12 C -0.126 4.126 13 C -0.106 4.106 14 C 0.039 3.961 15 H -0.016 1.016 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.011 3.989 19 N -0.916 5.916 20 Si 0.957 3.043 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.266 1.266 24 C 0.128 3.872 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.428 0.572 29 H 0.224 0.776 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.954 14.774 -2.788 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.127 5.127 3 C 0.102 3.898 4 O -0.242 6.242 5 N -0.236 5.236 6 C -0.103 4.103 7 C -0.206 4.206 8 C 0.364 3.636 9 O -0.470 6.470 10 N -0.320 5.320 11 C -0.048 4.048 12 C -0.164 4.164 13 C -0.144 4.144 14 C 0.019 3.981 15 H 0.002 0.998 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.188 4.188 19 N -0.554 5.554 20 Si 0.782 3.218 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.191 1.191 24 C 0.006 3.994 25 H 0.097 0.903 26 H 0.146 0.854 27 H 0.101 0.899 28 H 0.290 0.710 29 H 0.240 0.760 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.661 15.222 -2.500 16.803 hybrid contribution -1.761 -1.585 -0.450 2.411 sum 4.900 13.637 -2.950 14.788 Atomic orbital electron populations 1.22360 0.74355 1.06334 1.04645 1.45770 1.09120 1.05408 1.52385 1.20344 0.84322 0.82047 1.03061 1.84791 1.86736 1.16221 1.36464 1.70370 1.16983 1.12825 1.23387 1.23333 0.95865 0.90014 1.01047 1.20532 0.92299 0.87578 1.20161 1.17145 0.83916 0.84083 0.78452 1.90788 1.23509 1.83046 1.49677 1.48206 1.19008 1.07513 1.57280 1.22861 0.83698 1.03144 0.95074 1.21911 1.02825 0.95555 0.96144 1.21534 0.96770 0.95651 1.00395 1.18905 0.93150 0.94475 0.91539 0.99805 1.21495 0.99544 0.92792 1.43596 0.91838 1.25874 0.96097 1.02106 0.94729 1.70072 1.05795 1.35781 1.43789 0.85626 0.77056 0.80375 0.78719 1.19470 1.21560 1.19086 1.21815 1.01302 0.76662 0.99620 0.90308 0.85429 0.89877 0.71010 0.75970 0.86166 0.88469 0.93806 0.87484 0.93064 0.91850 0.93130 0.93565 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.54 10.81 127.77 1.38 2.92 16 2 N -0.43 -12.16 3.20 -651.99 -2.09 -14.25 16 3 C 0.40 9.98 9.01 179.99 1.62 11.60 16 4 O -0.44 -7.52 13.44 -84.93 -1.14 -8.66 16 5 N -0.51 -13.70 11.22 -313.64 -3.52 -17.22 16 6 C 0.05 1.34 9.58 84.13 0.81 2.15 16 7 C -0.09 -2.89 6.55 39.80 0.26 -2.63 16 8 C 0.58 23.64 7.57 86.36 0.65 24.29 16 9 O -0.59 -29.18 14.70 -4.45 -0.07 -29.24 16 10 N -0.59 -23.35 2.97 -823.93 -2.45 -25.80 16 11 C 0.07 2.05 5.39 86.36 0.47 2.52 16 12 C -0.13 -3.73 6.08 30.67 0.19 -3.54 16 13 C -0.11 -4.00 5.11 30.62 0.16 -3.84 16 14 C 0.04 1.92 2.25 -11.46 -0.03 1.89 16 15 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 16 C -0.54 -29.08 8.56 25.60 0.22 -28.86 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.01 0.63 5.31 84.65 0.45 1.08 16 19 N -0.92 -54.99 11.40 21.45 0.24 -54.74 16 20 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.13 6.23 5.41 86.36 0.47 6.70 16 25 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.13 1.87 8.03 -2.39 -0.02 1.85 16 27 H 0.08 2.45 6.63 -2.39 -0.02 2.44 16 28 H 0.43 2.41 9.06 -74.06 -0.67 1.74 16 29 H 0.22 4.44 5.75 -2.91 -0.02 4.42 16 30 H 0.12 2.84 3.41 -2.39 -0.01 2.83 16 31 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.08 4.64 5.13 -2.38 -0.01 4.63 16 Total: -1.00 -76.06 308.61 0.08 -75.98 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.43 Total: 13.96 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.64 Total: 14.27 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -7.81 Total: -112.02 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.21 Total: -37.90 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -76.06 0.08 -75.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601664597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.526 kcal (2) G-P(sol) polarization free energy of solvation -76.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds