Wall clock time and date at job start Tue Mar 31 2020 01:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.47199 * 119.78878 * 2 1 4 4 C 1.52982 * 108.66523 * 108.03880 * 3 2 1 5 5 C 1.51777 * 110.88201 * 86.46659 * 4 3 2 6 6 C 1.51793 * 113.81571 * 293.00120 * 5 4 3 7 7 C 1.53060 * 110.74369 * 66.80209 * 6 5 4 8 8 H 1.08998 * 109.63420 * 155.18559 * 7 6 5 9 9 C 1.50703 * 109.63284 * 34.79136 * 7 6 5 10 10 O 1.21290 * 119.99769 * 14.73387 * 9 7 6 11 11 N 1.34776 * 120.00124 * 194.73957 * 9 7 6 12 12 C 1.37092 * 120.00152 * 180.02562 * 11 9 7 13 13 H 1.08003 * 119.99938 * 335.16372 * 12 11 9 14 14 C 1.38954 * 120.00479 * 155.16356 * 12 11 9 15 15 N 1.31410 * 119.99510 * 4.65429 * 14 12 11 16 16 Si 1.86793 * 120.00501 * 184.64784 * 14 12 11 17 17 H 1.48501 * 109.47189 * 59.99973 * 16 14 12 18 18 H 1.48493 * 109.47524 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47171 * 300.00457 * 16 14 12 20 20 C 1.46498 * 119.99811 * 359.97438 * 11 9 7 21 21 C 1.47202 * 109.47371 * 279.41411 * 20 11 9 22 22 N 5.15241 * 114.06405 * 221.07194 * 2 1 3 23 23 C 1.33368 * 119.78868 * 180.02562 * 2 1 3 24 24 O 1.21282 * 119.88996 * 0.27988 * 23 2 1 25 25 H 1.09008 * 109.47365 * 89.99718 * 1 2 3 26 26 H 1.09006 * 109.47562 * 210.00051 * 1 2 3 27 27 H 1.09004 * 109.47534 * 330.00163 * 1 2 3 28 28 H 1.09001 * 109.59996 * 348.29214 * 3 2 1 29 29 H 1.08999 * 109.60800 * 227.79340 * 3 2 1 30 30 H 1.09002 * 109.19878 * 326.11038 * 4 3 2 31 31 H 1.08996 * 109.16260 * 206.80746 * 4 3 2 32 32 H 1.08997 * 108.61851 * 171.87769 * 5 4 3 33 33 H 1.09006 * 108.50158 * 54.04190 * 5 4 3 34 34 H 1.08998 * 109.21933 * 306.48132 * 6 5 4 35 35 H 1.08999 * 109.22755 * 187.12870 * 6 5 4 36 36 H 0.97001 * 119.99891 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.47126 * 159.41459 * 20 11 9 38 38 H 1.09000 * 109.47400 * 39.41457 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1962 1.2775 0.0000 4 6 2.8289 1.4794 1.3781 5 6 4.1870 0.8061 1.4538 6 6 4.1247 -0.7090 1.3841 7 6 3.6416 -1.1689 0.0065 8 1 4.0041 -2.1778 -0.1907 9 6 4.1597 -0.2291 -1.0515 10 8 5.0522 0.5486 -0.7875 11 7 3.6311 -0.2526 -2.2911 12 6 4.1028 0.6020 -3.2538 13 1 4.5758 1.5297 -2.9674 14 6 3.9722 0.2747 -4.5979 15 7 3.3163 -0.8084 -4.9496 16 14 4.7287 1.3742 -5.9048 17 1 6.1968 1.4534 -5.6959 18 1 4.4493 0.8093 -7.2493 19 1 4.1409 2.7345 -5.8080 20 6 2.5534 -1.1923 -2.6101 21 6 3.1254 -2.5212 -2.8818 22 7 3.5658 -3.5467 -3.0910 23 6 2.1275 -1.1574 -0.0005 24 8 1.5152 -2.2044 -0.0061 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.5052 2.0943 -0.2084 29 1 2.9765 1.2522 -0.7606 30 1 2.1748 1.0532 2.1388 31 1 2.9472 2.5468 1.5646 32 1 4.6655 1.0919 2.3905 33 1 4.7989 1.1675 0.6272 34 1 3.4370 -1.0752 2.1463 35 1 5.1176 -1.1180 1.5712 36 1 3.2255 -1.0371 -5.8879 37 1 2.0146 -0.8418 -3.4904 38 1 1.8668 -1.2579 -1.7661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602085062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:49 Heat of formation + Delta-G solvation = -1.520826 kcal Electronic energy + Delta-G solvation = -24001.694156 eV Core-core repulsion = 20653.158044 eV Total energy + Delta-G solvation = -3348.536112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.78343 -39.96032 -38.33840 -37.09140 -36.46561 -35.14852 -33.88403 -32.24076 -29.41761 -29.35767 -27.23779 -26.05580 -24.81407 -22.41313 -21.12142 -20.16979 -19.70781 -19.02415 -18.19913 -17.78389 -17.31270 -16.51346 -16.20429 -15.79646 -15.79006 -15.19880 -14.92594 -14.70807 -14.54613 -14.26148 -13.97980 -13.77525 -13.60225 -13.44572 -13.39645 -13.05807 -12.87351 -12.78402 -12.67230 -12.50120 -12.15401 -12.02952 -11.80811 -11.64986 -11.37664 -11.13073 -10.81367 -10.09794 -9.68558 -9.57139 -8.32810 -6.06917 1.34519 1.45734 1.47346 1.56270 1.70180 1.83117 1.98628 2.13844 2.29333 2.89423 3.03329 3.35239 3.40981 3.70945 3.82872 4.00603 4.14722 4.27197 4.39028 4.41648 4.53801 4.63296 4.72927 4.78625 4.87290 4.95703 5.00717 5.08349 5.19762 5.29187 5.35193 5.44568 5.55558 5.84720 6.01627 6.25620 6.39183 6.80727 7.01572 7.07944 7.25309 7.79602 8.63134 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.008304 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.442960 B = 3371.206474 C = 3813.459154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.082 3.918 4 C -0.121 4.121 5 C -0.186 4.186 6 C -0.080 4.080 7 C -0.132 4.132 8 H 0.098 0.902 9 C 0.471 3.529 10 O -0.562 6.562 11 N -0.446 5.446 12 C -0.326 4.326 13 H 0.103 0.897 14 C 0.001 3.999 15 N -0.905 5.905 16 Si 0.992 3.008 17 H -0.282 1.282 18 H -0.285 1.285 19 H -0.255 1.255 20 C 0.200 3.800 21 C 0.255 3.745 22 N -0.505 5.505 23 C 0.531 3.469 24 O -0.580 6.580 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.273 0.727 37 H 0.149 0.851 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 8.100 9.529 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.331 5.331 3 C -0.040 4.040 4 C -0.159 4.159 5 C -0.222 4.222 6 C -0.118 4.118 7 C -0.157 4.157 8 H 0.116 0.884 9 C 0.262 3.738 10 O -0.447 6.447 11 N -0.166 5.166 12 C -0.453 4.453 13 H 0.121 0.879 14 C -0.200 4.200 15 N -0.545 5.545 16 Si 0.816 3.184 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.179 1.179 20 C 0.074 3.926 21 C -0.062 4.062 22 N -0.185 5.185 23 C 0.320 3.680 24 O -0.463 6.463 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.166 0.834 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.607 6.392 9.148 12.489 hybrid contribution 0.333 0.137 -0.950 1.016 sum -5.274 6.529 8.198 11.732 Atomic orbital electron populations 1.21944 0.77312 1.04390 1.02935 1.47865 1.08310 1.05989 1.70961 1.22480 0.97583 0.84563 0.99368 1.21629 0.96361 1.02164 0.95738 1.22227 0.99981 0.93802 1.06239 1.20988 1.01642 0.98269 0.90915 1.21866 0.93584 1.01145 0.99065 0.88430 1.19859 0.84126 0.85913 0.83921 1.90142 1.33046 1.42911 1.78611 1.43788 1.31293 1.32029 1.09482 1.19787 1.38107 1.01832 0.85559 0.87887 1.26082 0.96226 0.97704 0.99990 1.69836 1.40073 1.25768 1.18841 0.84987 0.78320 0.78662 0.76445 1.20734 1.21034 1.17901 1.19636 0.89537 0.78843 1.04618 1.29860 0.92378 0.94325 0.89679 1.80848 1.09738 1.14916 1.13017 1.19732 0.89381 0.84029 0.74820 1.90732 1.69979 1.32509 1.53079 0.91940 0.91253 0.87596 0.86776 0.90580 0.91389 0.88837 0.91231 0.85917 0.90977 0.90597 0.91615 0.83368 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 10.35 127.77 1.32 2.96 16 2 N -0.60 -17.12 2.43 -848.49 -2.07 -19.18 16 3 C 0.08 2.17 5.80 86.24 0.50 2.67 16 4 C -0.12 -2.79 5.73 30.19 0.17 -2.62 16 5 C -0.19 -5.24 5.15 29.80 0.15 -5.08 16 6 C -0.08 -2.44 5.30 30.22 0.16 -2.28 16 7 C -0.13 -4.93 2.38 -12.03 -0.03 -4.96 16 8 H 0.10 3.97 7.98 -2.39 -0.02 3.95 16 9 C 0.47 19.96 3.85 87.66 0.34 20.30 16 10 O -0.56 -25.21 12.05 -3.06 -0.04 -25.25 16 11 N -0.45 -20.19 2.11 -645.41 -1.36 -21.55 16 12 C -0.33 -15.68 9.22 84.04 0.78 -14.90 16 13 H 0.10 4.99 7.43 -2.91 -0.02 4.97 16 14 C 0.00 0.03 5.36 84.93 0.46 0.48 16 15 N -0.91 -44.62 8.90 21.66 0.19 -44.43 16 16 Si 0.99 38.93 29.55 68.60 2.03 40.95 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 20 C 0.20 8.79 4.71 84.57 0.40 9.19 16 21 C 0.26 12.49 13.59 89.45 1.22 13.71 16 22 N -0.50 -26.05 18.53 20.00 0.37 -25.68 16 23 C 0.53 18.87 3.19 88.11 0.28 19.15 16 24 O -0.58 -23.59 15.88 -3.04 -0.05 -23.63 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.07 1.63 7.38 -2.38 -0.02 1.61 16 27 H 0.11 1.52 8.03 -2.38 -0.02 1.50 16 28 H 0.11 2.29 7.92 -2.39 -0.02 2.27 16 29 H 0.08 2.62 3.78 -2.39 -0.01 2.61 16 30 H 0.07 1.43 8.05 -2.39 -0.02 1.41 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.12 4.34 4.00 -87.52 -0.35 3.99 16 34 H 0.07 1.98 7.86 -2.39 -0.02 1.96 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 37 H 0.15 6.76 5.87 -2.39 -0.01 6.74 16 38 H 0.11 4.29 3.03 -3.63 -0.01 4.28 16 Total: -1.00 -60.89 297.63 5.58 -55.31 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.75 Total: 24.84 kcal Atomic # 6 Polarization: 32.88 SS G_CDS: 5.74 Total: 38.62 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -2.86 Total: -110.84 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -0.09 Total: -48.88 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.95 kcal Total: -60.89 5.58 -55.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602085062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.787 kcal (2) G-P(sol) polarization free energy of solvation -60.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds