Wall clock time and date at job start Tue Mar 31 2020 01:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.47194 * 119.78471 * 2 1 4 4 C 1.52984 * 108.66293 * 251.96568 * 3 2 1 5 5 C 1.51774 * 110.88279 * 273.53999 * 4 3 2 6 6 C 1.51769 * 113.82695 * 66.98306 * 5 4 3 7 7 C 1.53055 * 110.76311 * 293.22302 * 6 5 4 8 8 H 1.09000 * 109.79798 * 204.69246 * 7 6 5 9 9 C 1.50706 * 109.63527 * 325.19261 * 7 6 5 10 10 O 1.21298 * 119.99505 * 344.23712 * 9 7 6 11 11 N 1.34771 * 119.99848 * 164.23901 * 9 7 6 12 12 C 1.37100 * 119.99484 * 179.97438 * 11 9 7 13 13 H 1.07996 * 120.00150 * 30.47736 * 12 11 9 14 14 C 1.38950 * 119.99996 * 210.47353 * 12 11 9 15 15 N 1.31414 * 119.99970 * 38.04332 * 14 12 11 16 16 Si 1.86796 * 120.00103 * 218.04412 * 14 12 11 17 17 H 1.48507 * 109.47480 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47200 * 300.00019 * 16 14 12 19 19 H 1.48503 * 109.47252 * 59.99946 * 16 14 12 20 20 C 1.46493 * 120.00540 * 0.02562 * 11 9 7 21 21 C 1.47205 * 109.46850 * 255.52929 * 20 11 9 22 22 N 2.93143 * 65.96712 * 86.79729 * 2 1 3 23 23 C 1.33375 * 119.77972 * 180.02562 * 2 1 3 24 24 O 1.21282 * 119.89313 * 359.70360 * 23 2 1 25 25 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47020 * 299.97904 * 1 2 3 27 27 H 1.08999 * 109.46559 * 59.98050 * 1 2 3 28 28 H 1.09000 * 109.60698 * 11.72132 * 3 2 1 29 29 H 1.09004 * 109.60238 * 132.21573 * 3 2 1 30 30 H 1.09004 * 109.19794 * 33.90388 * 4 3 2 31 31 H 1.08998 * 109.19401 * 153.22409 * 4 3 2 32 32 H 1.09002 * 108.61826 * 188.12029 * 5 4 3 33 33 H 1.09005 * 108.61725 * 306.01902 * 5 4 3 34 34 H 1.09004 * 109.23539 * 172.87450 * 6 5 4 35 35 H 1.09001 * 109.19093 * 53.54456 * 6 5 4 36 36 H 0.96998 * 119.99979 * 3.91145 * 15 14 12 37 37 H 1.09001 * 109.47014 * 15.51759 * 20 11 9 38 38 H 1.08992 * 109.47704 * 135.52516 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1963 1.2775 0.0000 4 6 2.8289 1.4795 -1.3782 5 6 4.1869 0.8061 -1.4540 6 6 4.1249 -0.7087 -1.3841 7 6 3.6417 -1.1690 -0.0067 8 1 4.0012 -2.1786 0.1923 9 6 4.1595 -0.2293 1.0517 10 8 5.0648 0.5355 0.7932 11 7 3.6169 -0.2390 2.2853 12 6 4.0884 0.6154 3.2482 13 1 4.4936 1.5760 2.9663 14 6 4.0448 0.2457 4.5868 15 7 4.2896 -0.9981 4.9333 16 14 3.6381 1.5165 5.8941 17 1 3.6549 0.8729 7.2324 18 1 4.6461 2.6063 5.8556 19 1 2.2892 2.0805 5.6336 20 6 2.5240 -1.1632 2.5976 21 6 1.2524 -0.4228 2.6402 22 7 0.2712 0.1496 2.6731 23 6 2.1275 -1.1576 -0.0005 24 8 1.5151 -2.2045 0.0045 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3632 0.5141 -0.8898 28 1 1.5054 2.0944 0.2086 29 1 2.9767 1.2521 0.7605 30 1 2.1746 1.0534 -2.1388 31 1 2.9478 2.5467 -1.5650 32 1 4.6653 1.0920 -2.3909 33 1 4.8002 1.1654 -0.6276 34 1 5.1178 -1.1178 -1.5713 35 1 3.4373 -1.0748 -2.1465 36 1 4.5562 -1.6451 4.2616 37 1 2.4697 -1.9345 1.8293 38 1 2.7066 -1.6277 3.5665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602085063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:52 Heat of formation + Delta-G solvation = 15.469872 kcal Electronic energy + Delta-G solvation = -24301.141224 eV Core-core repulsion = 20953.341885 eV Total energy + Delta-G solvation = -3347.799340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38427 -38.44887 -36.88780 -36.05480 -34.78948 -33.90662 -32.24850 -30.93364 -28.19047 -27.76250 -25.81200 -24.45987 -23.48959 -21.04379 -19.74585 -18.86843 -18.38985 -17.44020 -16.89923 -16.49721 -15.85785 -15.10533 -14.79029 -14.62930 -14.05760 -13.88813 -13.68991 -13.41540 -13.23226 -12.99414 -12.92802 -12.37496 -12.26973 -12.12474 -11.92946 -11.72786 -11.47248 -11.35832 -11.08916 -10.73805 -10.55232 -10.51600 -10.33700 -10.28288 -10.14619 -9.50276 -9.03276 -8.55889 -8.40656 -7.97141 -6.97085 -4.19655 2.78188 3.02151 3.09323 3.22065 3.28713 3.35731 3.43990 3.45499 4.02782 4.39013 4.55450 4.62686 4.90573 5.01983 5.10052 5.11682 5.35668 5.37104 5.50675 5.60809 5.63139 5.76213 5.81759 5.89650 5.99888 6.06581 6.15841 6.19380 6.30797 6.39031 6.41734 6.65164 7.09699 7.51145 7.55146 7.89404 8.12811 8.23061 8.31779 8.60679 9.03262 9.44591 10.28326 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.008825 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.631648 B = 3172.053747 C = 3614.257579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.597 5.597 3 C 0.087 3.913 4 C -0.126 4.126 5 C -0.187 4.187 6 C -0.081 4.081 7 C -0.132 4.132 8 H 0.122 0.878 9 C 0.464 3.536 10 O -0.539 6.539 11 N -0.435 5.435 12 C -0.426 4.426 13 H 0.098 0.902 14 C 0.026 3.974 15 N -0.842 5.842 16 Si 1.056 2.944 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.282 1.282 20 C 0.160 3.840 21 C 0.220 3.780 22 N -0.445 5.445 23 C 0.525 3.475 24 O -0.557 6.557 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.150 0.850 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.280 0.720 37 H 0.117 0.883 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 1.018 -8.340 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.328 5.328 3 C -0.036 4.036 4 C -0.164 4.164 5 C -0.223 4.223 6 C -0.119 4.119 7 C -0.157 4.157 8 H 0.140 0.860 9 C 0.255 3.745 10 O -0.423 6.423 11 N -0.155 5.155 12 C -0.552 4.552 13 H 0.116 0.884 14 C -0.186 4.186 15 N -0.473 5.473 16 Si 0.881 3.119 17 H -0.202 1.202 18 H -0.204 1.204 19 H -0.208 1.208 20 C 0.033 3.967 21 C -0.097 4.097 22 N -0.126 5.126 23 C 0.314 3.686 24 O -0.437 6.437 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.166 0.834 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.199 1.892 -6.764 8.183 hybrid contribution 0.444 -0.504 -1.769 1.892 sum -3.756 1.388 -8.533 9.425 Atomic orbital electron populations 1.22162 0.79463 1.04253 1.02317 1.47656 1.07095 1.06579 1.71449 1.22336 0.97432 0.84421 0.99398 1.21642 0.97554 1.00904 0.96292 1.22296 0.98763 0.94759 1.06469 1.20912 1.01274 0.97286 0.92441 1.21955 0.92224 1.03027 0.98492 0.85996 1.19634 0.84466 0.86514 0.83887 1.90135 1.31951 1.42547 1.77697 1.43631 1.26641 1.34815 1.10378 1.20169 1.47997 0.99854 0.87171 0.88433 1.26326 0.94095 1.00082 0.98078 1.70837 1.33598 1.05374 1.37508 0.83682 0.77510 0.75120 0.75548 1.20230 1.20377 1.20840 1.19502 0.78923 0.91567 1.06695 1.29504 0.94297 0.93472 0.92473 1.80703 1.12753 1.09001 1.10123 1.20147 0.89925 0.83559 0.74984 1.90692 1.69715 1.31287 1.52009 0.89856 0.89631 0.92845 0.90321 0.87340 0.92704 0.91182 0.93070 0.83407 0.90595 0.92494 0.90897 0.86575 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 9.27 59.85 0.56 1.51 16 2 N -0.60 -10.18 1.39 -181.10 -0.25 -10.43 16 3 C 0.09 1.45 5.62 -3.67 -0.02 1.42 16 4 C -0.13 -1.82 5.73 -27.36 -0.16 -1.98 16 5 C -0.19 -2.89 5.16 -27.98 -0.14 -3.03 16 6 C -0.08 -1.24 5.29 -27.33 -0.14 -1.38 16 7 C -0.13 -2.31 2.35 -92.54 -0.22 -2.53 16 8 H 0.12 1.98 8.11 -51.93 -0.42 1.56 16 9 C 0.46 9.54 3.95 -10.98 -0.04 9.49 16 10 O -0.54 -12.12 12.21 5.54 0.07 -12.05 16 11 N -0.43 -9.52 1.87 -117.94 -0.22 -9.74 16 12 C -0.43 -10.44 8.57 -14.93 -0.13 -10.57 16 13 H 0.10 2.54 7.75 -52.49 -0.41 2.13 16 14 C 0.03 0.63 4.69 -17.47 -0.08 0.55 16 15 N -0.84 -21.01 12.28 55.50 0.68 -20.33 16 16 Si 1.06 22.28 30.05 -169.99 -5.11 17.17 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 C 0.16 3.26 4.79 -6.83 -0.03 3.23 16 21 C 0.22 4.54 12.08 -20.74 -0.25 4.29 16 22 N -0.45 -9.19 15.15 42.17 0.64 -8.55 16 23 C 0.53 9.51 3.06 -11.25 -0.03 9.47 16 24 O -0.56 -11.02 15.28 5.56 0.08 -10.94 16 25 H 0.08 1.39 6.85 -51.93 -0.36 1.03 16 26 H 0.09 1.45 5.23 -51.93 -0.27 1.18 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.23 7.96 -51.93 -0.41 0.82 16 29 H 0.11 2.14 3.76 -51.93 -0.20 1.95 16 30 H 0.05 0.76 8.05 -51.93 -0.42 0.35 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.15 2.76 4.02 -57.07 -0.23 2.53 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.82 7.86 -51.93 -0.41 0.41 16 36 H 0.28 6.91 7.65 -40.82 -0.31 6.60 16 37 H 0.12 2.22 4.19 -51.93 -0.22 2.00 16 38 H 0.12 2.64 5.58 -51.93 -0.29 2.35 16 LS Contribution 289.71 15.07 4.37 4.37 Total: -1.00 -26.83 289.71 -4.87 -31.70 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.43 Total: 8.33 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -0.70 Total: 10.48 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.85 Total: -49.05 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.15 Total: -22.99 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.11 Total: 17.17 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.83 -4.87 -31.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602085063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.166 kcal (2) G-P(sol) polarization free energy of solvation -26.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds