Wall clock time and date at job start Tue Mar 31 2020 01:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.47194 * 119.78471 * 2 1 4 4 C 1.52984 * 108.66293 * 251.96568 * 3 2 1 5 5 C 1.51774 * 110.88279 * 273.53999 * 4 3 2 6 6 C 1.51769 * 113.82695 * 66.98306 * 5 4 3 7 7 C 1.53055 * 110.76311 * 293.22302 * 6 5 4 8 8 H 1.09000 * 109.79798 * 204.69246 * 7 6 5 9 9 C 1.50706 * 109.63527 * 325.19261 * 7 6 5 10 10 O 1.21298 * 119.99505 * 344.23712 * 9 7 6 11 11 N 1.34771 * 119.99848 * 164.23901 * 9 7 6 12 12 C 1.37100 * 119.99484 * 179.97438 * 11 9 7 13 13 H 1.07996 * 120.00150 * 30.47736 * 12 11 9 14 14 C 1.38950 * 119.99996 * 210.47353 * 12 11 9 15 15 N 1.31414 * 119.99970 * 38.04332 * 14 12 11 16 16 Si 1.86796 * 120.00103 * 218.04412 * 14 12 11 17 17 H 1.48507 * 109.47480 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47200 * 300.00019 * 16 14 12 19 19 H 1.48503 * 109.47252 * 59.99946 * 16 14 12 20 20 C 1.46493 * 120.00540 * 0.02562 * 11 9 7 21 21 C 1.47205 * 109.46850 * 255.52929 * 20 11 9 22 22 N 2.93143 * 65.96712 * 86.79729 * 2 1 3 23 23 C 1.33375 * 119.77972 * 180.02562 * 2 1 3 24 24 O 1.21282 * 119.89313 * 359.70360 * 23 2 1 25 25 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47020 * 299.97904 * 1 2 3 27 27 H 1.08999 * 109.46559 * 59.98050 * 1 2 3 28 28 H 1.09000 * 109.60698 * 11.72132 * 3 2 1 29 29 H 1.09004 * 109.60238 * 132.21573 * 3 2 1 30 30 H 1.09004 * 109.19794 * 33.90388 * 4 3 2 31 31 H 1.08998 * 109.19401 * 153.22409 * 4 3 2 32 32 H 1.09002 * 108.61826 * 188.12029 * 5 4 3 33 33 H 1.09005 * 108.61725 * 306.01902 * 5 4 3 34 34 H 1.09004 * 109.23539 * 172.87450 * 6 5 4 35 35 H 1.09001 * 109.19093 * 53.54456 * 6 5 4 36 36 H 0.96998 * 119.99979 * 3.91145 * 15 14 12 37 37 H 1.09001 * 109.47014 * 15.51759 * 20 11 9 38 38 H 1.08992 * 109.47704 * 135.52516 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1963 1.2775 0.0000 4 6 2.8289 1.4795 -1.3782 5 6 4.1869 0.8061 -1.4540 6 6 4.1249 -0.7087 -1.3841 7 6 3.6417 -1.1690 -0.0067 8 1 4.0012 -2.1786 0.1923 9 6 4.1595 -0.2293 1.0517 10 8 5.0648 0.5355 0.7932 11 7 3.6169 -0.2390 2.2853 12 6 4.0884 0.6154 3.2482 13 1 4.4936 1.5760 2.9663 14 6 4.0448 0.2457 4.5868 15 7 4.2896 -0.9981 4.9333 16 14 3.6381 1.5165 5.8941 17 1 3.6549 0.8729 7.2324 18 1 4.6461 2.6063 5.8556 19 1 2.2892 2.0805 5.6336 20 6 2.5240 -1.1632 2.5976 21 6 1.2524 -0.4228 2.6402 22 7 0.2712 0.1496 2.6731 23 6 2.1275 -1.1576 -0.0005 24 8 1.5151 -2.2045 0.0045 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3632 0.5141 -0.8898 28 1 1.5054 2.0944 0.2086 29 1 2.9767 1.2521 0.7605 30 1 2.1746 1.0534 -2.1388 31 1 2.9478 2.5467 -1.5650 32 1 4.6653 1.0920 -2.3909 33 1 4.8002 1.1654 -0.6276 34 1 5.1178 -1.1178 -1.5713 35 1 3.4373 -1.0748 -2.1465 36 1 4.5562 -1.6451 4.2616 37 1 2.4697 -1.9345 1.8293 38 1 2.7066 -1.6277 3.5665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602085063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:51 Heat of formation + Delta-G solvation = 0.935584 kcal Electronic energy + Delta-G solvation = -24301.771478 eV Core-core repulsion = 20953.341885 eV Total energy + Delta-G solvation = -3348.429594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.86558 -40.01951 -38.46756 -37.53965 -36.45072 -35.28559 -34.00376 -32.32186 -29.54309 -29.41776 -27.29517 -26.01521 -24.87168 -22.52180 -21.16467 -20.36447 -20.13565 -18.91002 -18.53784 -17.86611 -17.39449 -16.62392 -16.44786 -16.12134 -15.63200 -15.43230 -15.02368 -14.87984 -14.65868 -14.49555 -14.45021 -13.87390 -13.70167 -13.54349 -13.47744 -13.28276 -12.95559 -12.77224 -12.72735 -12.24445 -12.15049 -11.98714 -11.80803 -11.74901 -11.51472 -10.97622 -10.76603 -10.21464 -9.81248 -9.62837 -8.86636 -6.08921 1.32313 1.40810 1.42804 1.56607 1.68791 1.74475 1.78242 1.92889 2.34286 2.68579 2.87600 3.13772 3.29886 3.55778 3.74844 3.82829 3.97167 4.06925 4.16746 4.27232 4.36758 4.42283 4.50452 4.54891 4.64143 4.82053 4.85504 4.97859 5.04302 5.19653 5.24518 5.33931 5.69591 5.75043 6.00426 6.16346 6.40379 6.49731 6.84660 6.90164 7.23368 7.72874 8.39105 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.008825 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.631648 B = 3172.053747 C = 3614.257579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.595 5.595 3 C 0.085 3.915 4 C -0.119 4.119 5 C -0.184 4.184 6 C -0.080 4.080 7 C -0.130 4.130 8 H 0.135 0.865 9 C 0.472 3.528 10 O -0.558 6.558 11 N -0.447 5.447 12 C -0.437 4.437 13 H 0.075 0.925 14 C -0.002 4.002 15 N -0.859 5.859 16 Si 1.092 2.908 17 H -0.276 1.276 18 H -0.266 1.266 19 H -0.284 1.284 20 C 0.170 3.830 21 C 0.217 3.783 22 N -0.445 5.445 23 C 0.525 3.475 24 O -0.575 6.575 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.273 0.727 37 H 0.130 0.870 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 1.344 -9.817 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.325 5.325 3 C -0.037 4.037 4 C -0.157 4.157 5 C -0.220 4.220 6 C -0.118 4.118 7 C -0.154 4.154 8 H 0.153 0.847 9 C 0.265 3.735 10 O -0.442 6.442 11 N -0.168 5.168 12 C -0.563 4.563 13 H 0.092 0.908 14 C -0.210 4.210 15 N -0.490 5.490 16 Si 0.914 3.086 17 H -0.201 1.201 18 H -0.191 1.191 19 H -0.210 1.210 20 C 0.043 3.957 21 C -0.101 4.101 22 N -0.125 5.125 23 C 0.314 3.686 24 O -0.457 6.457 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.147 0.853 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.728 2.235 -8.256 9.773 hybrid contribution 0.620 -0.567 -1.408 1.640 sum -4.109 1.667 -9.664 10.633 Atomic orbital electron populations 1.22175 0.78642 1.03902 1.03167 1.47740 1.07666 1.06447 1.70637 1.22331 0.96897 0.84455 1.00003 1.21602 0.96996 1.02095 0.94979 1.22167 0.98883 0.94808 1.06170 1.20985 1.02337 0.97285 0.91165 1.22019 0.92025 1.02779 0.98615 0.84733 1.20119 0.83759 0.85837 0.83820 1.90187 1.32741 1.43137 1.78173 1.43648 1.27431 1.35245 1.10470 1.20004 1.48686 0.99567 0.88044 0.90753 1.27176 0.93687 1.00818 0.99357 1.70909 1.35142 1.05747 1.37239 0.83193 0.77429 0.73977 0.73960 1.20118 1.19129 1.20994 1.19428 0.78368 0.91363 1.06525 1.29585 0.94358 0.93502 0.92630 1.80707 1.12779 1.08959 1.10065 1.20180 0.90001 0.83572 0.74884 1.90689 1.70017 1.31915 1.53074 0.90747 0.90767 0.89882 0.89417 0.90410 0.91292 0.89451 0.90878 0.86443 0.89366 0.90847 0.91595 0.85316 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.87 9.27 127.77 1.19 3.05 16 2 N -0.59 -19.18 1.39 -846.06 -1.18 -20.36 16 3 C 0.09 2.71 5.62 86.24 0.48 3.20 16 4 C -0.12 -3.10 5.73 30.19 0.17 -2.93 16 5 C -0.18 -5.23 5.16 29.79 0.15 -5.08 16 6 C -0.08 -2.22 5.29 30.21 0.16 -2.06 16 7 C -0.13 -4.33 2.35 -12.04 -0.03 -4.36 16 8 H 0.13 4.14 8.11 -2.39 -0.02 4.12 16 9 C 0.47 19.27 3.95 87.66 0.35 19.62 16 10 O -0.56 -25.12 12.21 -3.09 -0.04 -25.15 16 11 N -0.45 -19.69 1.87 -645.43 -1.21 -20.90 16 12 C -0.44 -21.74 8.57 84.04 0.72 -21.02 16 13 H 0.07 3.99 7.75 -2.91 -0.02 3.97 16 14 C 0.00 -0.10 4.69 84.93 0.40 0.29 16 15 N -0.86 -43.24 12.28 21.66 0.27 -42.98 16 16 Si 1.09 45.09 30.05 68.60 2.06 47.15 16 17 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.17 6.91 4.79 84.58 0.41 7.32 16 21 C 0.22 8.86 12.08 89.44 1.08 9.94 16 22 N -0.44 -18.02 15.15 20.01 0.30 -17.72 16 23 C 0.52 18.10 3.06 88.10 0.27 18.37 16 24 O -0.57 -21.83 15.28 -3.03 -0.05 -21.88 16 25 H 0.07 2.36 6.85 -2.39 -0.02 2.34 16 26 H 0.07 2.40 5.23 -2.39 -0.01 2.39 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 28 H 0.09 2.59 7.96 -2.39 -0.02 2.57 16 29 H 0.08 3.03 3.76 -2.38 -0.01 3.02 16 30 H 0.07 1.65 8.05 -2.39 -0.02 1.63 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.12 4.25 4.02 -83.79 -0.34 3.91 16 34 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.07 1.85 7.86 -2.39 -0.02 1.83 16 36 H 0.27 13.74 7.65 -92.71 -0.71 13.03 16 37 H 0.13 4.86 4.19 -2.39 -0.01 4.85 16 38 H 0.11 4.91 5.58 -2.39 -0.01 4.90 16 Total: -1.00 -56.66 289.71 6.35 -50.31 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.84 Total: 25.18 kcal Atomic # 6 Polarization: 20.99 SS G_CDS: 5.35 Total: 26.34 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -1.81 Total: -101.95 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.08 Total: -47.04 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.06 Total: 47.15 kcal Total: -56.66 6.35 -50.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602085063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.244 kcal (2) G-P(sol) polarization free energy of solvation -56.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds