Wall clock time and date at job start Tue Mar 31 2020 01:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35921 * 119.45092 * 2 1 4 4 C 1.34989 * 120.89596 * 180.26330 * 3 2 1 5 5 C 1.41041 * 119.79000 * 359.74229 * 4 3 2 6 6 N 1.38816 * 120.52465 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00076 * 302.60849 * 6 5 4 8 8 O 1.21575 * 119.99737 * 4.95077 * 7 6 5 9 9 N 1.34772 * 120.00108 * 184.95507 * 7 6 5 10 10 C 1.46495 * 120.00134 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46926 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46958 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99862 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99757 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99825 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00398 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46571 * 89.99751 * 17 15 13 19 19 H 1.48497 * 109.47152 * 210.00010 * 17 15 13 20 20 H 1.48500 * 109.46733 * 330.00249 * 17 15 13 21 21 C 1.38407 * 118.95060 * 0.02562 * 5 4 3 22 22 C 1.34587 * 119.45177 * 179.75113 * 2 1 3 23 23 O 1.22119 * 119.92182 * 0.02562 * 22 2 1 24 24 H 1.09008 * 109.46671 * 270.25216 * 1 2 3 25 25 H 1.09001 * 109.47346 * 30.25347 * 1 2 3 26 26 H 1.09004 * 109.47064 * 150.25942 * 1 2 3 27 27 H 1.07999 * 119.55544 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.10624 * 179.72537 * 4 3 2 29 29 H 0.97001 * 120.00024 * 122.61076 * 6 5 4 30 30 H 0.97004 * 120.00153 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47181 * 299.99937 * 10 9 7 32 32 H 1.09001 * 109.47038 * 59.99880 * 10 9 7 33 33 H 1.09000 * 109.47290 * 299.99572 * 11 10 9 34 34 H 1.09001 * 109.47233 * 60.00016 * 11 10 9 35 35 H 1.08995 * 109.46990 * 299.99489 * 12 11 10 36 36 H 1.09001 * 109.47025 * 60.00043 * 12 11 10 37 37 H 0.96998 * 120.00342 * 180.02562 * 16 15 13 38 38 H 1.08004 * 120.45186 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1332 1.1836 0.0000 4 6 3.4827 1.2176 -0.0053 5 6 4.2141 0.0117 -0.0055 6 7 5.6021 0.0289 -0.0114 7 6 6.2640 0.6638 -0.9991 8 8 5.6480 1.2970 -1.8343 9 7 7.6086 0.5965 -1.0608 10 6 8.3280 1.2871 -2.1340 11 6 9.8313 1.0524 -1.9734 12 6 10.5826 1.7731 -3.0947 13 6 12.0635 1.5424 -2.9361 14 1 12.4318 0.9415 -2.1178 15 6 12.9478 2.0976 -3.8364 16 7 14.2401 1.8959 -3.6984 17 14 12.3107 3.1364 -5.2522 18 1 12.2354 4.5577 -4.8285 19 1 13.2320 3.0131 -6.4103 20 1 10.9582 2.6641 -5.6431 21 6 3.5259 -1.1892 -0.0006 22 6 2.1267 -1.1719 0.0051 23 8 1.5046 -2.2228 0.0092 24 1 -0.3633 0.0045 1.0278 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5098 27 1 1.5771 2.1094 0.0004 28 1 4.0007 2.1653 -0.0097 29 1 6.0957 -0.4161 0.6952 30 1 8.1001 0.0915 -0.3942 31 1 8.0004 0.8998 -3.0988 32 1 8.1199 2.3558 -2.0818 33 1 10.1586 1.4400 -1.0087 34 1 10.0398 -0.0163 -2.0253 35 1 10.2554 1.3850 -4.0592 36 1 10.3742 2.8417 -3.0432 37 1 14.8624 2.2868 -4.3315 38 1 4.0616 -2.1271 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603021742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:47 Heat of formation + Delta-G solvation = -32.883239 kcal Electronic energy + Delta-G solvation = -20476.262780 eV Core-core repulsion = 17126.366692 eV Total energy + Delta-G solvation = -3349.896088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.65362 -40.22938 -37.29133 -36.32793 -35.35290 -33.55661 -32.78204 -31.34619 -30.15690 -27.84787 -26.88320 -24.15438 -23.60564 -22.34177 -21.07980 -20.41055 -18.71459 -18.06127 -17.55981 -17.38813 -16.73000 -16.26463 -15.72868 -15.57538 -14.97104 -14.50850 -14.40938 -14.19282 -13.92382 -13.54131 -13.39609 -13.03928 -12.72851 -12.43012 -12.09352 -12.00060 -11.95392 -11.13554 -10.94501 -10.74930 -10.54512 -10.31081 -10.07780 -9.88874 -9.73626 -9.39712 -9.26278 -8.91287 -8.58186 -8.25585 -6.08847 -4.07914 0.42875 1.58020 2.32376 2.47917 2.99071 3.29283 3.37212 3.37339 3.41104 4.00622 4.25135 4.37006 4.42012 4.81751 4.83772 4.89518 5.00839 5.22319 5.25151 5.25418 5.43538 5.60391 5.72452 5.91436 5.93276 5.96659 6.23041 6.39440 6.41810 6.54616 6.71486 6.75567 6.77637 7.18712 7.32189 7.71831 7.76905 7.80071 8.39911 8.47393 8.94722 9.53194 11.04305 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.046697 B = 0.002515 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.472365 B =11132.031616 C =11404.513105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.503 5.503 3 C 0.137 3.863 4 C -0.211 4.211 5 C 0.275 3.725 6 N -0.700 5.700 7 C 0.703 3.297 8 O -0.574 6.574 9 N -0.733 5.733 10 C 0.131 3.869 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C -0.271 4.271 22 C 0.523 3.477 23 O -0.559 6.559 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.411 0.589 30 H 0.398 0.602 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.461 -0.977 11.032 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.215 5.215 3 C 0.010 3.990 4 C -0.236 4.236 5 C 0.176 3.824 6 N -0.352 5.352 7 C 0.404 3.596 8 O -0.449 6.449 9 N -0.387 5.387 10 C 0.008 3.992 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.296 4.296 22 C 0.326 3.674 23 O -0.443 6.443 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.184 0.816 28 H 0.168 0.832 29 H 0.249 0.751 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.205 -1.012 10.117 28.108 hybrid contribution 0.501 0.235 -0.109 0.564 sum -25.704 -0.777 10.008 27.594 Atomic orbital electron populations 1.22146 0.77259 1.05018 1.03781 1.45438 1.09327 1.06779 1.59967 1.21733 0.93283 0.89394 0.94555 1.20772 0.92409 0.99143 1.11239 1.17824 0.82496 0.92824 0.89282 1.42461 1.04360 1.59572 1.28839 1.15925 0.82401 0.79818 0.81468 1.90970 1.67125 1.45615 1.41231 1.45349 1.04129 1.56227 1.33022 1.21610 0.92435 0.96499 0.88627 1.21722 0.90427 1.01581 1.01415 1.19503 0.96251 0.95357 0.93773 1.21083 0.88985 1.32753 1.13250 0.91002 1.25033 0.94747 0.96035 0.97693 1.69909 1.01617 1.45260 1.37341 0.86772 0.79278 0.80982 0.82253 1.20243 1.21368 1.18862 1.22314 0.92816 0.98695 1.15759 1.16581 0.88600 0.82734 0.79463 1.90974 1.69399 1.29774 1.54138 0.90648 0.89685 0.88786 0.81594 0.83230 0.75130 0.76771 0.91659 0.91651 0.92032 0.92005 0.96244 0.96687 0.92671 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.34 59.84 0.62 0.95 16 2 N -0.50 -4.35 2.99 -127.46 -0.38 -4.73 16 3 C 0.14 0.94 10.26 -16.89 -0.17 0.77 16 4 C -0.21 -1.91 8.84 -39.67 -0.35 -2.26 16 5 C 0.28 2.86 5.83 -83.57 -0.49 2.37 16 6 N -0.70 -6.76 5.26 -14.07 -0.07 -6.84 16 7 C 0.70 9.31 8.42 -86.92 -0.73 8.58 16 8 O -0.57 -9.83 15.41 5.30 0.08 -9.75 16 9 N -0.73 -9.05 5.56 -65.23 -0.36 -9.41 16 10 C 0.13 2.03 5.67 -4.04 -0.02 2.00 16 11 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 16 12 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 13 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 17 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 21 C -0.27 -3.02 9.96 -38.88 -0.39 -3.41 16 22 C 0.52 6.38 7.38 -15.71 -0.12 6.27 16 23 O -0.56 -8.67 16.61 4.81 0.08 -8.59 16 24 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 25 H 0.08 0.21 8.01 -51.93 -0.42 -0.20 16 26 H 0.09 0.66 7.37 -51.93 -0.38 0.28 16 27 H 0.17 0.46 8.03 -52.49 -0.42 0.03 16 28 H 0.15 1.35 7.91 -52.49 -0.42 0.93 16 29 H 0.41 2.60 8.84 -40.82 -0.36 2.24 16 30 H 0.40 3.74 8.49 -40.82 -0.35 3.39 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -36.73 327.64 -7.18 -43.90 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.23 Total: 0.57 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.33 Total: -0.19 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.04 Total: -47.61 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.16 Total: -18.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.73 -7.18 -43.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603021742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.021 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds