Wall clock time and date at job start Tue Mar 31 2020 01:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35921 * 119.45092 * 2 1 4 4 C 1.34989 * 120.89596 * 180.26330 * 3 2 1 5 5 C 1.41041 * 119.79000 * 359.74229 * 4 3 2 6 6 N 1.38816 * 120.52465 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00076 * 302.60849 * 6 5 4 8 8 O 1.21575 * 119.99737 * 4.95077 * 7 6 5 9 9 N 1.34772 * 120.00108 * 184.95507 * 7 6 5 10 10 C 1.46495 * 120.00134 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46926 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46958 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99862 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99757 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99825 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00398 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46571 * 89.99751 * 17 15 13 19 19 H 1.48497 * 109.47152 * 210.00010 * 17 15 13 20 20 H 1.48500 * 109.46733 * 330.00249 * 17 15 13 21 21 C 1.38407 * 118.95060 * 0.02562 * 5 4 3 22 22 C 1.34587 * 119.45177 * 179.75113 * 2 1 3 23 23 O 1.22119 * 119.92182 * 0.02562 * 22 2 1 24 24 H 1.09008 * 109.46671 * 270.25216 * 1 2 3 25 25 H 1.09001 * 109.47346 * 30.25347 * 1 2 3 26 26 H 1.09004 * 109.47064 * 150.25942 * 1 2 3 27 27 H 1.07999 * 119.55544 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.10624 * 179.72537 * 4 3 2 29 29 H 0.97001 * 120.00024 * 122.61076 * 6 5 4 30 30 H 0.97004 * 120.00153 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47181 * 299.99937 * 10 9 7 32 32 H 1.09001 * 109.47038 * 59.99880 * 10 9 7 33 33 H 1.09000 * 109.47290 * 299.99572 * 11 10 9 34 34 H 1.09001 * 109.47233 * 60.00016 * 11 10 9 35 35 H 1.08995 * 109.46990 * 299.99489 * 12 11 10 36 36 H 1.09001 * 109.47025 * 60.00043 * 12 11 10 37 37 H 0.96998 * 120.00342 * 180.02562 * 16 15 13 38 38 H 1.08004 * 120.45186 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1332 1.1836 0.0000 4 6 3.4827 1.2176 -0.0053 5 6 4.2141 0.0117 -0.0055 6 7 5.6021 0.0289 -0.0114 7 6 6.2640 0.6638 -0.9991 8 8 5.6480 1.2970 -1.8343 9 7 7.6086 0.5965 -1.0608 10 6 8.3280 1.2871 -2.1340 11 6 9.8313 1.0524 -1.9734 12 6 10.5826 1.7731 -3.0947 13 6 12.0635 1.5424 -2.9361 14 1 12.4318 0.9415 -2.1178 15 6 12.9478 2.0976 -3.8364 16 7 14.2401 1.8959 -3.6984 17 14 12.3107 3.1364 -5.2522 18 1 12.2354 4.5577 -4.8285 19 1 13.2320 3.0131 -6.4103 20 1 10.9582 2.6641 -5.6431 21 6 3.5259 -1.1892 -0.0006 22 6 2.1267 -1.1719 0.0051 23 8 1.5046 -2.2228 0.0092 24 1 -0.3633 0.0045 1.0278 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5098 27 1 1.5771 2.1094 0.0004 28 1 4.0007 2.1653 -0.0097 29 1 6.0957 -0.4161 0.6952 30 1 8.1001 0.0915 -0.3942 31 1 8.0004 0.8998 -3.0988 32 1 8.1199 2.3558 -2.0818 33 1 10.1586 1.4400 -1.0087 34 1 10.0398 -0.0163 -2.0253 35 1 10.2554 1.3850 -4.0592 36 1 10.3742 2.8417 -3.0432 37 1 14.8624 2.2868 -4.3315 38 1 4.0616 -2.1271 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603021742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:46 Heat of formation + Delta-G solvation = -60.409331 kcal Electronic energy + Delta-G solvation = -20477.456401 eV Core-core repulsion = 17126.366692 eV Total energy + Delta-G solvation = -3351.089709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.44128 -41.22808 -38.22364 -37.32029 -36.55831 -35.18752 -33.91149 -32.90062 -30.93845 -29.11980 -27.89052 -25.10682 -24.71477 -23.50755 -22.26472 -21.79988 -19.73926 -19.07022 -18.69982 -18.35106 -18.04735 -16.99552 -16.82235 -16.67396 -16.25722 -15.82625 -15.64083 -15.26869 -15.09572 -14.75534 -14.21115 -14.07460 -13.82943 -13.74715 -13.50049 -13.03598 -12.72408 -12.70140 -12.67024 -11.95004 -11.77809 -11.58246 -11.57340 -11.44503 -11.30676 -11.17255 -10.74229 -10.35107 -9.90343 -9.03870 -8.27516 -6.31372 -0.31186 0.80437 1.38758 1.40848 1.47378 1.52421 1.73557 1.96720 2.38234 2.58679 3.08480 3.10855 3.74559 3.78622 4.10090 4.14168 4.20330 4.25192 4.42558 4.48119 4.52327 4.53684 4.82350 4.90078 4.93008 5.01891 5.06260 5.18231 5.27507 5.37812 5.51610 5.59297 5.64555 5.67986 5.82575 6.03531 6.29360 6.77069 6.88852 6.94897 7.33534 7.39892 8.88822 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.046697 B = 0.002515 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.472365 B =11132.031616 C =11404.513105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.499 5.499 3 C 0.165 3.835 4 C -0.235 4.235 5 C 0.277 3.723 6 N -0.684 5.684 7 C 0.706 3.294 8 O -0.612 6.612 9 N -0.724 5.724 10 C 0.146 3.854 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.529 4.529 14 H 0.037 0.963 15 C 0.002 3.998 16 N -0.951 5.951 17 Si 0.948 3.052 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.246 1.246 21 C -0.295 4.295 22 C 0.509 3.491 23 O -0.608 6.608 24 H 0.091 0.909 25 H 0.125 0.875 26 H 0.073 0.927 27 H 0.219 0.781 28 H 0.154 0.846 29 H 0.428 0.572 30 H 0.414 0.586 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.265 0.735 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.767 0.873 11.091 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.208 5.208 3 C 0.037 3.963 4 C -0.259 4.259 5 C 0.177 3.823 6 N -0.337 5.337 7 C 0.406 3.594 8 O -0.491 6.491 9 N -0.379 5.379 10 C 0.022 3.978 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.568 4.568 14 H 0.056 0.944 15 C -0.194 4.194 16 N -0.592 5.592 17 Si 0.771 3.229 18 H -0.191 1.191 19 H -0.213 1.213 20 H -0.170 1.170 21 C -0.320 4.320 22 C 0.314 3.686 23 O -0.496 6.496 24 H 0.109 0.891 25 H 0.143 0.857 26 H 0.092 0.908 27 H 0.236 0.764 28 H 0.172 0.828 29 H 0.268 0.732 30 H 0.251 0.749 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.525 0.826 10.237 30.317 hybrid contribution 1.207 -0.324 -0.035 1.250 sum -27.318 0.502 10.202 29.165 Atomic orbital electron populations 1.22438 0.75134 1.05991 1.05208 1.45575 1.10823 1.06421 1.57981 1.22470 0.92955 0.90163 0.90707 1.20943 0.93506 0.98619 1.12792 1.18002 0.82577 0.93190 0.88571 1.42222 1.04331 1.58747 1.28418 1.15947 0.82323 0.79574 0.81518 1.90943 1.67886 1.47375 1.42861 1.45043 1.04012 1.56087 1.32736 1.21223 0.90885 0.96624 0.89108 1.21483 0.91492 1.01037 0.99830 1.19472 0.93491 0.96429 0.95691 1.21479 0.91865 1.31499 1.11908 0.94446 1.26008 0.94858 0.97685 1.00888 1.70063 1.03182 1.47106 1.38878 0.85689 0.79314 0.79403 0.78450 1.19132 1.21322 1.16964 1.22224 0.92800 0.98996 1.17964 1.16761 0.88967 0.83245 0.79635 1.90936 1.70229 1.31534 1.56897 0.89052 0.85695 0.90809 0.76434 0.82845 0.73202 0.74916 0.92550 0.91827 0.91430 0.91841 0.96110 0.95924 0.92582 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 10.34 127.77 1.32 1.76 16 2 N -0.50 -7.57 2.99 -675.32 -2.02 -9.59 16 3 C 0.16 1.67 10.26 83.31 0.85 2.52 16 4 C -0.23 -3.69 8.84 22.21 0.20 -3.50 16 5 C 0.28 5.42 5.83 38.76 0.23 5.64 16 6 N -0.68 -12.20 5.26 -316.71 -1.67 -13.87 16 7 C 0.71 17.50 8.42 179.06 1.51 19.00 16 8 O -0.61 -20.06 15.41 -3.95 -0.06 -20.12 16 9 N -0.72 -16.42 5.56 -478.56 -2.66 -19.08 16 10 C 0.15 4.22 5.67 86.38 0.49 4.71 16 11 C -0.10 -3.38 5.27 30.60 0.16 -3.22 16 12 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 13 C -0.53 -29.42 9.66 25.60 0.25 -29.17 16 14 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 15 C 0.00 0.13 5.47 84.65 0.46 0.59 16 16 N -0.95 -58.92 13.96 21.44 0.30 -58.62 16 17 Si 0.95 43.60 27.47 68.60 1.88 45.49 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 21 C -0.30 -6.61 9.96 22.72 0.23 -6.38 16 22 C 0.51 12.40 7.38 84.68 0.63 13.03 16 23 O -0.61 -19.56 16.61 -5.71 -0.09 -19.65 16 24 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 25 H 0.12 0.06 8.01 -2.39 -0.02 0.04 16 26 H 0.07 0.98 7.37 -2.39 -0.02 0.97 16 27 H 0.22 -0.09 8.03 -2.91 -0.02 -0.12 16 28 H 0.15 2.36 7.91 -2.91 -0.02 2.34 16 29 H 0.43 4.69 8.84 -92.71 -0.82 3.87 16 30 H 0.41 6.83 8.49 -92.71 -0.79 6.04 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 36 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -82.35 327.64 1.55 -80.80 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -0.57 Total: 10.10 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 6.44 Total: 4.55 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -6.04 Total: -101.16 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.16 Total: -39.77 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Total: -82.35 1.55 -80.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603021742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.389 kcal (2) G-P(sol) polarization free energy of solvation -82.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds