Wall clock time and date at job start Tue Mar 31 2020 00:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46971 * 2 1 4 4 C 1.46492 * 120.00518 * 270.00281 * 3 2 1 5 5 C 1.50704 * 109.47334 * 270.00453 * 4 3 2 6 6 H 1.07999 * 119.99931 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00204 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99729 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00195 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46921 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47027 * 119.99308 * 9 7 5 12 12 H 1.48501 * 109.46954 * 239.99846 * 9 7 5 13 13 C 1.34786 * 119.99707 * 90.00586 * 3 2 1 14 14 O 1.21566 * 120.00005 * 179.97438 * 13 3 2 15 15 N 1.34776 * 119.99728 * 0.02562 * 13 3 2 16 16 C 1.38812 * 119.99636 * 185.04978 * 15 13 3 17 17 C 1.41050 * 120.52462 * 57.11389 * 16 15 13 18 18 C 1.34983 * 119.78597 * 179.97438 * 17 16 15 19 19 N 1.35919 * 120.90062 * 359.72483 * 18 17 16 20 20 C 1.46502 * 119.45453 * 180.30125 * 19 18 17 21 21 C 1.34594 * 121.09718 * 0.56079 * 19 18 17 22 22 O 1.22127 * 119.92119 * 179.71916 * 21 19 18 23 23 C 1.38410 * 120.52487 * 237.08930 * 16 15 13 24 24 H 1.08999 * 109.46822 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47020 * 299.99335 * 1 2 3 26 26 H 1.08997 * 109.47177 * 59.99145 * 1 2 3 27 27 H 1.09000 * 109.47288 * 240.00945 * 2 1 3 28 28 H 1.09003 * 109.47729 * 120.00446 * 2 1 3 29 29 H 1.09006 * 109.47013 * 29.99834 * 4 3 2 30 30 H 1.09003 * 109.47579 * 150.00098 * 4 3 2 31 31 H 0.97009 * 119.99964 * 180.02562 * 8 7 5 32 32 H 0.96995 * 120.00305 * 5.04725 * 15 13 3 33 33 H 1.08000 * 120.10606 * 0.02562 * 17 16 15 34 34 H 1.07999 * 119.54985 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47005 * 270.25730 * 20 19 18 36 36 H 1.08998 * 109.46886 * 30.25523 * 20 19 18 37 37 H 1.09004 * 109.47009 * 150.25364 * 20 19 18 38 38 H 1.07994 * 120.44760 * 0.04758 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3908 -2.8774 8 7 3.3492 3.1269 -3.6174 9 14 5.9136 2.0979 -3.4165 10 1 6.6013 1.2425 -2.4161 11 1 5.9214 1.4194 -4.7374 12 1 6.6208 3.3992 -3.5241 13 6 2.2430 2.0166 1.1673 14 8 2.6486 3.1626 1.1674 15 7 2.0190 1.3809 2.3344 16 6 2.1493 2.0666 3.5343 17 6 1.3946 3.2330 3.7785 18 6 1.5327 3.8878 4.9508 19 7 2.3873 3.4359 5.9063 20 6 2.5074 4.1677 7.1697 21 6 3.1289 2.3302 5.7090 22 8 3.8937 1.9462 6.5802 23 6 3.0214 1.6163 4.5102 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.5816 1.6879 -2.0283 30 1 2.0954 3.1412 -1.1382 31 1 3.6752 3.5176 -4.4433 32 1 1.7666 0.4443 2.3360 33 1 0.7079 3.6004 3.0303 34 1 0.9527 4.7802 5.1339 35 1 3.2868 4.9242 7.0787 36 1 1.5580 4.6504 7.4016 37 1 2.7666 3.4731 7.9687 38 1 3.6112 0.7263 4.3486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603022704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:55 Heat of formation + Delta-G solvation = -16.867982 kcal Electronic energy + Delta-G solvation = -21702.098068 eV Core-core repulsion = 18352.896454 eV Total energy + Delta-G solvation = -3349.201614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31686 -39.78048 -36.94300 -35.92463 -35.14422 -32.98216 -32.19063 -30.19058 -29.84140 -27.67257 -26.62853 -23.87713 -23.41288 -23.10683 -21.79857 -19.63392 -18.10732 -17.47651 -17.19526 -16.79157 -16.42328 -15.98696 -15.41152 -14.92417 -14.53292 -14.15410 -14.09622 -13.69452 -13.28749 -13.22279 -13.10303 -12.83722 -12.52157 -12.10778 -12.02982 -11.78449 -11.68817 -11.24131 -10.95304 -10.85469 -10.58282 -10.34469 -10.13942 -10.04939 -9.65619 -9.41850 -8.84499 -8.44872 -7.96214 -7.72146 -6.05985 -4.10348 0.78421 1.90872 2.63735 3.09126 3.29843 3.37880 3.42680 3.59005 3.83461 4.28821 4.45340 4.53455 4.61593 5.06216 5.14917 5.18485 5.22926 5.28475 5.31752 5.45664 5.52388 5.60102 5.62236 5.91827 6.04354 6.14819 6.27554 6.28617 6.40571 6.70721 6.94269 7.07015 7.28988 7.45165 7.59707 7.91801 8.07815 8.20963 8.49889 8.90442 9.17081 9.55315 11.01962 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.004319 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.385112 B = 6481.318453 C = 7041.254358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.605 5.605 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.701 3.299 14 O -0.565 6.565 15 N -0.707 5.707 16 C 0.286 3.714 17 C -0.209 4.209 18 C 0.134 3.866 19 N -0.505 5.505 20 C 0.061 3.939 21 C 0.525 3.475 22 O -0.565 6.565 23 C -0.279 4.279 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.406 0.594 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 -2.214 15.655 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.340 5.340 4 C 0.141 3.859 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.403 3.597 14 O -0.441 6.441 15 N -0.361 5.361 16 C 0.185 3.815 17 C -0.234 4.234 18 C 0.007 3.993 19 N -0.217 5.217 20 C -0.080 4.080 21 C 0.328 3.672 22 O -0.449 6.449 23 C -0.304 4.304 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.245 0.755 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.562 -1.491 15.935 18.151 hybrid contribution 0.821 -0.578 -0.618 1.179 sum -7.742 -2.069 15.317 17.286 Atomic orbital electron populations 1.22242 0.96565 1.01530 1.02543 1.21391 0.93645 0.84250 1.02534 1.47627 1.66820 1.13389 1.06146 1.19251 0.96297 0.93469 0.76850 1.21505 0.96996 1.31878 1.06243 0.92399 1.24914 0.97848 0.94878 0.96375 1.69937 1.35602 1.33496 1.14365 0.86451 0.84656 0.78094 0.78279 1.19807 1.20963 1.20872 1.15879 0.79104 0.84834 0.79845 1.90941 1.50912 1.16675 1.85523 1.42850 1.75016 1.14641 1.03580 1.17866 0.88942 0.90216 0.84446 1.20794 1.05745 0.98942 0.97923 1.21664 0.91547 0.97785 0.88318 1.45395 1.35357 1.24885 1.16088 1.22099 1.03138 0.97495 0.85303 1.16584 0.81482 0.80249 0.88838 1.90946 1.39571 1.68794 1.45623 1.22254 1.05095 1.07184 0.95897 0.92066 0.93040 0.91785 0.89435 0.92416 0.94673 0.93709 0.92766 0.75528 0.83426 0.81784 0.90814 0.89878 0.88951 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.11 1.58 5.94 -4.04 -0.02 1.56 16 3 N -0.61 -12.25 2.46 -180.80 -0.44 -12.69 16 4 C 0.26 6.59 5.16 -5.20 -0.03 6.56 16 5 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.70 14.31 8.07 -86.91 -0.70 13.61 16 14 O -0.57 -14.07 15.30 5.31 0.08 -13.99 16 15 N -0.71 -10.89 5.14 -14.07 -0.07 -10.97 16 16 C 0.29 4.26 5.75 -83.57 -0.48 3.78 16 17 C -0.21 -2.70 8.98 -39.67 -0.36 -3.06 16 18 C 0.13 1.35 10.26 -16.90 -0.17 1.17 16 19 N -0.51 -5.91 2.99 -127.46 -0.38 -6.29 16 20 C 0.06 0.49 10.34 59.85 0.62 1.11 16 21 C 0.53 8.14 7.38 -15.71 -0.12 8.02 16 22 O -0.56 -10.40 16.61 4.80 0.08 -10.32 16 23 C -0.28 -4.25 9.96 -38.88 -0.39 -4.63 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 0.70 6.29 -51.93 -0.33 0.37 16 29 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.41 4.99 6.52 -40.82 -0.27 4.72 16 33 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.16 0.93 8.03 -52.49 -0.42 0.51 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.37 8.01 -51.93 -0.42 -0.05 16 37 H 0.09 0.83 7.37 -51.93 -0.38 0.45 16 38 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -36.46 328.16 -6.88 -43.34 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.12 Total: 1.61 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -1.69 Total: 13.00 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.16 Total: -55.42 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.16 Total: -24.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.46 -6.88 -43.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603022704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.470 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds