Wall clock time and date at job start Tue Mar 31 2020 00:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46971 * 2 1 4 4 C 1.46492 * 120.00518 * 270.00281 * 3 2 1 5 5 C 1.50704 * 109.47334 * 270.00453 * 4 3 2 6 6 H 1.07999 * 119.99931 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00204 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99729 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00195 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46921 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47027 * 119.99308 * 9 7 5 12 12 H 1.48501 * 109.46954 * 239.99846 * 9 7 5 13 13 C 1.34786 * 119.99707 * 90.00586 * 3 2 1 14 14 O 1.21566 * 120.00005 * 179.97438 * 13 3 2 15 15 N 1.34776 * 119.99728 * 0.02562 * 13 3 2 16 16 C 1.38812 * 119.99636 * 185.04978 * 15 13 3 17 17 C 1.41050 * 120.52462 * 57.11389 * 16 15 13 18 18 C 1.34983 * 119.78597 * 179.97438 * 17 16 15 19 19 N 1.35919 * 120.90062 * 359.72483 * 18 17 16 20 20 C 1.46502 * 119.45453 * 180.30125 * 19 18 17 21 21 C 1.34594 * 121.09718 * 0.56079 * 19 18 17 22 22 O 1.22127 * 119.92119 * 179.71916 * 21 19 18 23 23 C 1.38410 * 120.52487 * 237.08930 * 16 15 13 24 24 H 1.08999 * 109.46822 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47020 * 299.99335 * 1 2 3 26 26 H 1.08997 * 109.47177 * 59.99145 * 1 2 3 27 27 H 1.09000 * 109.47288 * 240.00945 * 2 1 3 28 28 H 1.09003 * 109.47729 * 120.00446 * 2 1 3 29 29 H 1.09006 * 109.47013 * 29.99834 * 4 3 2 30 30 H 1.09003 * 109.47579 * 150.00098 * 4 3 2 31 31 H 0.97009 * 119.99964 * 180.02562 * 8 7 5 32 32 H 0.96995 * 120.00305 * 5.04725 * 15 13 3 33 33 H 1.08000 * 120.10606 * 0.02562 * 17 16 15 34 34 H 1.07999 * 119.54985 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47005 * 270.25730 * 20 19 18 36 36 H 1.08998 * 109.46886 * 30.25523 * 20 19 18 37 37 H 1.09004 * 109.47009 * 150.25364 * 20 19 18 38 38 H 1.07994 * 120.44760 * 0.04758 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3908 -2.8774 8 7 3.3492 3.1269 -3.6174 9 14 5.9136 2.0979 -3.4165 10 1 6.6013 1.2425 -2.4161 11 1 5.9214 1.4194 -4.7374 12 1 6.6208 3.3992 -3.5241 13 6 2.2430 2.0166 1.1673 14 8 2.6486 3.1626 1.1674 15 7 2.0190 1.3809 2.3344 16 6 2.1493 2.0666 3.5343 17 6 1.3946 3.2330 3.7785 18 6 1.5327 3.8878 4.9508 19 7 2.3873 3.4359 5.9063 20 6 2.5074 4.1677 7.1697 21 6 3.1289 2.3302 5.7090 22 8 3.8937 1.9462 6.5802 23 6 3.0214 1.6163 4.5102 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.5816 1.6879 -2.0283 30 1 2.0954 3.1412 -1.1382 31 1 3.6752 3.5176 -4.4433 32 1 1.7666 0.4443 2.3360 33 1 0.7079 3.6004 3.0303 34 1 0.9527 4.7802 5.1339 35 1 3.2868 4.9242 7.0787 36 1 1.5580 4.6504 7.4016 37 1 2.7666 3.4731 7.9687 38 1 3.6112 0.7263 4.3486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603022704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:54 Heat of formation + Delta-G solvation = -42.188183 kcal Electronic energy + Delta-G solvation = -21703.196034 eV Core-core repulsion = 18352.896454 eV Total energy + Delta-G solvation = -3350.299580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.42491 -41.26027 -38.19068 -37.24525 -36.65942 -34.92975 -33.47064 -31.62827 -30.92859 -29.21316 -27.86992 -25.31685 -24.73363 -24.42569 -23.14680 -21.08370 -19.49403 -18.67392 -18.48889 -18.29545 -17.99606 -16.98707 -16.94298 -16.33682 -16.28471 -15.67604 -15.20446 -15.06757 -14.59697 -14.43902 -14.17245 -14.10064 -13.71525 -13.49367 -13.26869 -13.09926 -13.01061 -12.75572 -12.65759 -12.51275 -12.20213 -11.98277 -11.70985 -11.47876 -11.33850 -11.02370 -10.62680 -10.14428 -9.43049 -9.02164 -8.21125 -6.34788 -0.28150 0.81853 1.36608 1.39289 1.49972 1.63087 1.77275 2.12764 2.39540 2.61843 2.95310 3.09278 3.74330 3.79776 4.06129 4.15828 4.21950 4.38478 4.43594 4.48816 4.53074 4.54412 4.83120 4.86325 4.98109 5.01315 5.03393 5.20145 5.24470 5.33480 5.38768 5.57278 5.71078 5.77736 6.00408 6.04472 6.08277 6.74066 6.95136 6.99986 7.31872 7.59834 8.85579 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.004319 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.385112 B = 6481.318453 C = 7041.254358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.610 5.610 4 C 0.279 3.721 5 C -0.544 4.544 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.702 3.298 14 O -0.617 6.617 15 N -0.687 5.687 16 C 0.279 3.721 17 C -0.239 4.239 18 C 0.169 3.831 19 N -0.499 5.499 20 C 0.054 3.946 21 C 0.513 3.487 22 O -0.606 6.606 23 C -0.301 4.301 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.003 0.997 31 H 0.267 0.733 32 H 0.421 0.579 33 H 0.148 0.852 34 H 0.222 0.778 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.188 -2.224 16.845 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.344 5.344 4 C 0.157 3.843 5 C -0.582 4.582 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.787 3.213 10 H -0.196 1.196 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.404 3.596 14 O -0.496 6.496 15 N -0.342 5.342 16 C 0.179 3.821 17 C -0.263 4.263 18 C 0.041 3.959 19 N -0.208 5.208 20 C -0.086 4.086 21 C 0.318 3.682 22 O -0.494 6.494 23 C -0.326 4.326 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.263 0.737 33 H 0.166 0.834 34 H 0.239 0.761 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.462 -1.554 17.167 19.663 hybrid contribution 1.009 -0.517 -0.917 1.458 sum -8.453 -2.071 16.250 18.433 Atomic orbital electron populations 1.22155 0.94117 1.03613 1.01958 1.21733 0.95626 0.81323 1.03739 1.47484 1.67036 1.15217 1.04674 1.18677 0.95086 0.91580 0.78939 1.21767 0.98127 1.31898 1.06443 0.93262 1.25747 1.01967 0.94531 0.96452 1.70036 1.37465 1.34164 1.14820 0.85447 0.79518 0.77939 0.78364 1.19629 1.19292 1.20835 1.15962 0.78584 0.84283 0.80778 1.90893 1.53212 1.19052 1.86461 1.42468 1.74131 1.15196 1.02396 1.18113 0.89282 0.91015 0.83673 1.20919 1.06718 0.99117 0.99569 1.22433 0.89371 0.97767 0.86288 1.45550 1.33952 1.23780 1.17549 1.22445 1.06160 0.97044 0.82978 1.16653 0.81771 0.81378 0.88422 1.90914 1.41545 1.70234 1.46735 1.22189 1.06113 1.07789 0.96484 0.88567 0.92275 0.93717 0.90243 0.89223 0.95136 0.97870 0.92388 0.73707 0.83383 0.76113 0.90022 0.85080 0.90246 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 10.24 71.98 0.74 -2.90 16 2 C 0.10 2.83 5.94 86.38 0.51 3.34 16 3 N -0.61 -25.06 2.46 -844.20 -2.07 -27.14 16 4 C 0.28 14.62 5.16 85.64 0.44 15.06 16 5 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.70 5.46 84.66 0.46 1.17 16 8 N -0.92 -55.08 13.29 21.45 0.28 -54.80 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 C 0.70 29.04 8.07 179.05 1.45 30.49 16 14 O -0.62 -31.64 15.30 -3.92 -0.06 -31.70 16 15 N -0.69 -20.91 5.14 -316.70 -1.63 -22.54 16 16 C 0.28 8.20 5.75 38.77 0.22 8.43 16 17 C -0.24 -5.80 8.98 22.21 0.20 -5.60 16 18 C 0.17 2.83 10.26 83.31 0.85 3.68 16 19 N -0.50 -10.47 2.99 -675.31 -2.02 -12.48 16 20 C 0.05 0.69 10.34 127.77 1.32 2.01 16 21 C 0.51 15.74 7.38 84.68 0.63 16.37 16 22 O -0.61 -22.65 16.61 -5.73 -0.10 -22.74 16 23 C -0.30 -9.22 9.96 22.72 0.23 -9.00 16 24 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 28 H 0.09 2.00 6.29 -2.39 -0.02 1.98 16 29 H 0.03 1.61 8.07 -2.38 -0.02 1.59 16 30 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 31 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 32 H 0.42 9.82 6.52 -92.71 -0.60 9.22 16 33 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.22 1.16 8.03 -2.91 -0.02 1.14 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.13 0.45 8.01 -2.39 -0.02 0.43 16 37 H 0.08 1.29 7.37 -2.39 -0.02 1.28 16 38 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -83.73 328.16 4.20 -79.53 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.47 Total: 12.58 kcal Atomic # 6 Polarization: 24.88 SS G_CDS: 7.29 Total: 32.17 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -5.43 Total: -116.96 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -0.16 Total: -54.44 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -83.73 4.20 -79.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603022704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.344 kcal (2) G-P(sol) polarization free energy of solvation -83.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds