Wall clock time and date at job start Tue Mar 31 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46899 * 111.00298 * 293.95781 * 8 7 6 10 10 C 1.46902 * 110.99904 * 169.99854 * 8 7 6 11 11 C 1.50706 * 109.47004 * 190.00000 * 10 8 7 12 12 O 1.21291 * 120.00210 * 0.02562 * 11 10 8 13 13 N 1.34773 * 119.99763 * 179.97438 * 11 10 8 14 14 C 1.37093 * 120.00298 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99444 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00347 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99938 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46997 * 59.99776 * 18 16 14 20 20 H 1.48498 * 109.47428 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47323 * 299.99925 * 18 16 14 22 22 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 23 23 N 1.31967 * 120.83264 * 0.02562 * 22 6 5 24 24 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 26 26 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 27 27 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 28 28 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 30 30 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 31 31 H 1.08998 * 109.47481 * 59.99640 * 9 8 7 32 32 H 1.08998 * 109.47370 * 180.02562 * 9 8 7 33 33 H 1.08999 * 109.46713 * 299.99525 * 9 8 7 34 34 H 1.08996 * 109.47310 * 309.99967 * 10 8 7 35 35 H 1.09001 * 109.46694 * 70.00143 * 10 8 7 36 36 H 0.97008 * 119.99970 * 0.02562 * 13 11 10 37 37 H 0.96997 * 119.99950 * 180.02562 * 17 16 14 38 38 H 1.07994 * 119.58392 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 5.0742 4.6267 -2.0659 10 6 4.4654 6.8821 -1.4295 11 6 4.4256 7.3674 -2.8557 12 8 4.1069 6.6080 -3.7461 13 7 4.7430 8.6456 -3.1416 14 6 4.7063 9.0874 -4.4389 15 1 4.4234 8.4109 -5.2318 16 6 5.0341 10.4051 -4.7338 17 7 5.3789 11.2280 -3.7691 18 14 4.9848 11.0066 -6.5016 19 1 3.6094 10.8500 -7.0395 20 1 5.3739 12.4390 -6.5482 21 1 5.9311 10.2092 -7.3225 22 6 1.8772 3.5097 0.0021 23 7 1.3187 2.3141 0.0026 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0229 0.3694 -0.0035 28 1 5.1255 2.5946 0.0011 29 1 3.2187 5.7201 0.5158 30 1 4.8376 4.9803 0.5150 31 1 4.7302 3.5925 -2.0784 32 1 5.2055 4.9786 -3.0891 33 1 6.0251 4.6870 -1.5366 34 1 3.7708 7.4675 -0.8270 35 1 5.4749 6.9969 -1.0346 36 1 4.9975 9.2532 -2.4294 37 1 5.6074 12.1480 -3.9749 38 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610999155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:03 Heat of formation + Delta-G solvation = -24.937658 kcal Electronic energy + Delta-G solvation = -20968.244426 eV Core-core repulsion = 17618.692884 eV Total energy + Delta-G solvation = -3349.551542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.74462 -38.76240 -38.04508 -36.24795 -33.87542 -32.59702 -31.43594 -31.19541 -27.96961 -27.76448 -26.43508 -24.75725 -23.59570 -22.75882 -21.13385 -19.15881 -18.49872 -17.84016 -17.19008 -16.24457 -16.11312 -15.46898 -15.23455 -14.73955 -14.60800 -14.44815 -14.23903 -13.83537 -13.57507 -13.39724 -13.20703 -13.01619 -12.24894 -12.11373 -11.92512 -11.58075 -11.42741 -11.32861 -11.21896 -11.15012 -10.91238 -10.43469 -10.20760 -9.93092 -9.70393 -9.46068 -8.51382 -8.45178 -7.96816 -7.83601 -6.40975 -3.81670 1.08867 1.17592 2.97052 3.20652 3.26275 3.30679 3.61856 3.91687 4.12185 4.25305 4.33791 4.73281 4.81293 4.92074 5.02638 5.09485 5.14736 5.16657 5.25655 5.36167 5.44995 5.54424 5.66790 5.71951 5.75406 5.84657 5.95145 5.99398 6.21952 6.28618 6.34094 6.55513 7.10836 7.25920 7.35820 7.55875 7.78148 8.07188 8.62965 9.19118 9.55439 10.07605 10.76771 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.002947 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.050455 B = 9500.242738 C = 9739.188748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.313 3.687 4 C -0.192 4.192 5 C -0.034 4.034 6 C -0.157 4.157 7 C 0.100 3.900 8 N -0.514 5.514 9 C 0.021 3.979 10 C 0.046 3.954 11 C 0.444 3.556 12 O -0.577 6.577 13 N -0.565 5.565 14 C -0.299 4.299 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 0.930 3.070 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.161 3.839 23 N -0.541 5.541 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.014 0.986 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 -15.573 11.896 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.134 3.866 4 C -0.212 4.212 5 C -0.060 4.060 6 C -0.160 4.160 7 C -0.028 4.028 8 N -0.238 5.238 9 C -0.127 4.127 10 C -0.086 4.086 11 C 0.229 3.771 12 O -0.461 6.461 13 N -0.201 5.201 14 C -0.428 4.428 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.544 5.544 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C 0.006 3.994 23 N -0.264 5.264 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.032 0.968 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.882 -16.270 11.028 20.253 hybrid contribution 1.563 1.048 -0.008 1.882 sum -3.319 -15.223 11.021 19.084 Atomic orbital electron populations 1.22831 0.77357 1.02695 1.02548 1.86213 1.22852 1.24811 1.88049 1.19840 0.89416 0.84716 0.92622 1.20991 0.91989 0.99357 1.08908 1.21339 1.00393 0.90899 0.93398 1.20590 0.94849 0.95901 1.04620 1.20937 0.99160 0.92327 0.90423 1.61597 1.47317 1.01860 1.13055 1.22583 0.91209 0.97336 1.01588 1.21880 0.99819 0.89231 0.97629 1.19726 0.84405 0.83376 0.89557 1.90492 1.52523 1.55061 1.48016 1.41858 1.59707 1.09079 1.09489 1.19644 1.43196 0.95204 0.84781 0.87992 1.25249 0.97133 0.95849 0.99692 1.69599 1.46226 1.06237 1.32351 0.85928 0.78931 0.77406 0.82010 1.19885 1.20995 1.19940 1.22299 0.92300 0.93389 0.91460 1.67342 1.40857 0.98809 1.19367 0.88840 0.92382 0.92227 0.84329 0.84408 0.89675 0.93999 0.92178 0.88577 0.96751 0.89254 0.93374 0.77494 0.91840 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.73 10.48 -18.72 -0.20 -3.92 16 3 C 0.31 4.04 7.49 -17.12 -0.13 3.91 16 4 C -0.19 -2.17 10.04 -39.27 -0.39 -2.56 16 5 C -0.03 -0.38 8.14 -39.31 -0.32 -0.70 16 6 C -0.16 -1.90 4.89 -104.47 -0.51 -2.42 16 7 C 0.10 1.21 5.14 -4.98 -0.03 1.19 16 8 N -0.51 -8.36 4.49 -245.83 -1.10 -9.46 16 9 C 0.02 0.33 8.81 60.06 0.53 0.86 16 10 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 11 C 0.44 10.35 7.47 -10.98 -0.08 10.27 16 12 O -0.58 -15.48 13.91 5.55 0.08 -15.40 16 13 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 14 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 15 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 18 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.16 2.05 10.85 -17.56 -0.19 1.86 16 23 N -0.54 -7.30 9.22 -13.33 -0.12 -7.42 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 29 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 30 H 0.04 0.45 8.07 -51.93 -0.42 0.04 16 31 H 0.06 0.90 6.17 -51.93 -0.32 0.58 16 32 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 35 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 36 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -32.24 325.17 -6.22 -38.46 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.07 Total: 8.13 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.34 Total: 6.66 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.56 Total: -54.84 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.12 Total: -19.32 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.24 -6.22 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610999155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.518 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds