Wall clock time and date at job start Tue Mar 31 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46899 * 111.00298 * 293.95781 * 8 7 6 10 10 C 1.46902 * 110.99904 * 169.99854 * 8 7 6 11 11 C 1.50706 * 109.47004 * 190.00000 * 10 8 7 12 12 O 1.21291 * 120.00210 * 0.02562 * 11 10 8 13 13 N 1.34773 * 119.99763 * 179.97438 * 11 10 8 14 14 C 1.37093 * 120.00298 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99444 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00347 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99938 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46997 * 59.99776 * 18 16 14 20 20 H 1.48498 * 109.47428 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47323 * 299.99925 * 18 16 14 22 22 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 23 23 N 1.31967 * 120.83264 * 0.02562 * 22 6 5 24 24 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 26 26 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 27 27 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 28 28 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 30 30 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 31 31 H 1.08998 * 109.47481 * 59.99640 * 9 8 7 32 32 H 1.08998 * 109.47370 * 180.02562 * 9 8 7 33 33 H 1.08999 * 109.46713 * 299.99525 * 9 8 7 34 34 H 1.08996 * 109.47310 * 309.99967 * 10 8 7 35 35 H 1.09001 * 109.46694 * 70.00143 * 10 8 7 36 36 H 0.97008 * 119.99970 * 0.02562 * 13 11 10 37 37 H 0.96997 * 119.99950 * 180.02562 * 17 16 14 38 38 H 1.07994 * 119.58392 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 5.0742 4.6267 -2.0659 10 6 4.4654 6.8821 -1.4295 11 6 4.4256 7.3674 -2.8557 12 8 4.1069 6.6080 -3.7461 13 7 4.7430 8.6456 -3.1416 14 6 4.7063 9.0874 -4.4389 15 1 4.4234 8.4109 -5.2318 16 6 5.0341 10.4051 -4.7338 17 7 5.3789 11.2280 -3.7691 18 14 4.9848 11.0066 -6.5016 19 1 3.6094 10.8500 -7.0395 20 1 5.3739 12.4390 -6.5482 21 1 5.9311 10.2092 -7.3225 22 6 1.8772 3.5097 0.0021 23 7 1.3187 2.3141 0.0026 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0229 0.3694 -0.0035 28 1 5.1255 2.5946 0.0011 29 1 3.2187 5.7201 0.5158 30 1 4.8376 4.9803 0.5150 31 1 4.7302 3.5925 -2.0784 32 1 5.2055 4.9786 -3.0891 33 1 6.0251 4.6870 -1.5366 34 1 3.7708 7.4675 -0.8270 35 1 5.4749 6.9969 -1.0346 36 1 4.9975 9.2532 -2.4294 37 1 5.6074 12.1480 -3.9749 38 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610999155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:03 Heat of formation + Delta-G solvation = -50.202457 kcal Electronic energy + Delta-G solvation = -20969.339990 eV Core-core repulsion = 17618.692884 eV Total energy + Delta-G solvation = -3350.647105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64370 -40.32810 -39.13618 -37.55439 -35.84591 -33.55910 -33.23675 -32.35755 -29.34523 -28.71962 -27.47407 -26.52341 -24.59914 -23.86062 -22.19751 -20.94476 -19.83022 -19.35822 -18.09304 -17.83630 -17.01545 -16.74358 -16.56568 -16.31718 -15.87054 -15.54301 -15.42360 -15.31608 -14.97854 -14.70233 -14.20629 -14.02730 -13.70359 -13.44386 -13.19632 -13.00341 -12.74776 -12.59489 -12.50871 -12.40918 -12.27548 -12.10713 -12.06775 -11.43292 -10.82771 -10.63438 -10.24340 -9.97096 -9.44405 -9.10422 -8.44223 -5.92359 0.17441 0.29287 1.40606 1.42346 1.52909 2.10086 2.16343 2.30019 2.63322 3.06364 3.23170 3.38420 3.49422 3.82728 3.99297 4.06894 4.20914 4.30601 4.41083 4.42664 4.46025 4.53078 4.56834 4.60396 4.70787 4.75121 4.81512 4.87586 4.98430 5.21553 5.32384 5.43090 5.49299 5.91095 6.10313 6.21664 6.25570 6.64485 6.86568 7.16399 7.60835 8.17462 8.72965 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.002947 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.050455 B = 9500.242738 C = 9739.188748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.295 3.705 4 C -0.194 4.194 5 C -0.032 4.032 6 C -0.163 4.163 7 C 0.105 3.895 8 N -0.537 5.537 9 C 0.028 3.972 10 C 0.059 3.941 11 C 0.441 3.559 12 O -0.617 6.617 13 N -0.575 5.575 14 C -0.331 4.331 15 H 0.077 0.923 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.990 3.010 19 H -0.273 1.273 20 H -0.270 1.270 21 H -0.273 1.273 22 C 0.146 3.854 23 N -0.559 5.559 24 H 0.123 0.877 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 -15.866 13.044 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.229 6.229 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.057 4.057 6 C -0.166 4.166 7 C -0.023 4.023 8 N -0.261 5.261 9 C -0.120 4.120 10 C -0.072 4.072 11 C 0.229 3.771 12 O -0.503 6.503 13 N -0.213 5.213 14 C -0.461 4.461 15 H 0.095 0.905 16 C -0.212 4.212 17 N -0.562 5.562 18 Si 0.814 3.186 19 H -0.199 1.199 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.009 4.009 23 N -0.283 5.283 24 H 0.141 0.859 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.177 0.823 28 H 0.180 0.820 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.300 -16.566 12.210 21.024 hybrid contribution 1.339 1.036 -0.328 1.724 sum -2.961 -15.530 11.882 19.777 Atomic orbital electron populations 1.23011 0.76134 1.04514 1.02005 1.86202 1.24154 1.24554 1.88015 1.20198 0.90297 0.84854 0.93067 1.21293 0.91596 1.00447 1.08083 1.21639 1.01535 0.90337 0.92226 1.20657 0.94674 0.96369 1.04905 1.20991 1.00663 0.92493 0.88107 1.61505 1.47568 1.01153 1.15889 1.22411 0.92576 0.97569 0.99446 1.21751 1.02014 0.90279 0.93185 1.20860 0.82070 0.82271 0.91941 1.90474 1.53665 1.55921 1.50229 1.41929 1.60590 1.10021 1.08774 1.19591 1.45148 0.95696 0.85682 0.90510 1.25986 0.96255 0.95458 1.03526 1.69656 1.46139 1.06551 1.33832 0.85035 0.78765 0.77408 0.77409 1.19863 1.19483 1.19781 1.22530 0.93049 0.93490 0.91860 1.67316 1.41595 0.99291 1.20111 0.85879 0.92475 0.93187 0.82319 0.82013 0.88097 0.91691 0.91210 0.93021 0.94438 0.86729 0.90981 0.76963 0.91348 0.81524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.84 16 2 O -0.32 -7.42 10.48 -89.90 -0.94 -8.36 16 3 C 0.29 7.34 7.49 84.79 0.63 7.97 16 4 C -0.19 -4.01 10.04 22.47 0.23 -3.79 16 5 C -0.03 -0.61 8.14 22.45 0.18 -0.43 16 6 C -0.16 -3.61 4.89 -19.77 -0.10 -3.71 16 7 C 0.10 2.22 5.14 85.56 0.44 2.66 16 8 N -0.54 -16.37 4.49 -931.66 -4.18 -20.55 16 9 C 0.03 0.86 8.81 127.69 1.12 1.99 16 10 C 0.06 1.91 5.45 85.56 0.47 2.37 16 11 C 0.44 20.64 7.47 87.66 0.66 21.30 16 12 O -0.62 -33.96 13.91 -3.06 -0.04 -34.01 16 13 N -0.58 -29.20 5.29 -306.98 -1.62 -30.82 16 14 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 15 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 16 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 17 N -0.92 -49.48 13.05 21.66 0.28 -49.19 16 18 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.15 3.57 10.85 84.63 0.92 4.49 16 23 N -0.56 -14.82 9.22 -308.95 -2.85 -17.67 16 24 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 26 H 0.05 0.95 8.11 -2.38 -0.02 0.93 16 27 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.10 1.83 7.88 -2.39 -0.02 1.81 16 30 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 31 H 0.07 1.97 6.17 -2.39 -0.01 1.96 16 32 H 0.05 2.08 5.82 -2.39 -0.01 2.06 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 3.18 7.93 -2.39 -0.02 3.16 16 35 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 36 H 0.40 18.97 7.90 -92.70 -0.73 18.24 16 37 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -70.77 325.17 0.02 -70.74 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.34 Total: 28.30 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 7.01 Total: 16.51 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -8.37 Total: -118.24 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.98 Total: -42.36 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -70.77 0.02 -70.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610999155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.542 kcal (2) G-P(sol) polarization free energy of solvation -70.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds