Wall clock time and date at job start Tue Mar 31 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47516 * 2 1 4 4 C 1.35673 * 117.00303 * 180.02562 * 3 2 1 5 5 C 1.38816 * 119.64063 * 179.97438 * 4 3 2 6 6 C 1.38555 * 119.25380 * 179.97438 * 5 4 3 7 7 C 1.38554 * 118.56039 * 359.97438 * 6 5 4 8 8 C 1.38874 * 119.22526 * 0.02562 * 7 6 5 9 9 N 1.39397 * 119.65924 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00140 * 174.92104 * 9 8 7 11 11 O 1.21579 * 120.00060 * 5.08971 * 10 9 8 12 12 N 1.34778 * 120.00212 * 185.08674 * 10 9 8 13 13 C 1.46498 * 120.00228 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47034 * 180.02562 * 13 12 10 15 15 C 1.50707 * 109.47154 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99565 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99689 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47248 * 59.99781 * 19 17 15 21 21 H 1.48505 * 109.46973 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47021 * 299.99374 * 19 17 15 23 23 N 1.32294 * 119.64098 * 359.72201 * 4 3 2 24 24 H 1.09000 * 109.47006 * 300.00151 * 1 2 3 25 25 H 1.09000 * 109.46950 * 60.00202 * 1 2 3 26 26 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46697 * 239.99422 * 2 1 3 28 28 H 1.09000 * 109.46950 * 119.99798 * 2 1 3 29 29 H 1.07996 * 120.37444 * 359.95240 * 5 4 3 30 30 H 1.07999 * 120.71709 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.38150 * 179.97438 * 7 6 5 32 32 H 0.96996 * 119.99586 * 354.91833 * 9 8 7 33 33 H 0.96999 * 119.99828 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47141 * 300.00571 * 13 12 10 35 35 H 1.09000 * 109.46890 * 60.00419 * 13 12 10 36 36 H 1.09001 * 109.47392 * 300.00135 * 14 13 12 37 37 H 1.09000 * 109.47171 * 60.00308 * 14 13 12 38 38 H 0.97000 * 119.99486 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3515 1.5249 -0.0005 5 6 3.8740 2.8110 -0.0011 6 6 5.2488 2.9832 -0.0011 7 6 6.0574 1.8581 0.0000 8 6 5.4689 0.6002 0.0005 9 7 6.2737 -0.5379 0.0011 10 6 5.7136 -1.7594 0.1049 11 8 4.5034 -1.8751 0.1049 12 7 6.4951 -2.8525 0.2088 13 6 5.8863 -4.1802 0.3222 14 6 6.9863 -5.2384 0.4262 15 6 6.3600 -6.6043 0.5423 16 1 5.2850 -6.7070 0.5423 17 6 7.1595 -7.7224 0.6494 18 7 8.4687 -7.5971 0.6498 19 14 6.3831 -9.4153 0.7940 20 1 5.5514 -9.6827 -0.4068 21 1 7.4508 -10.4425 0.8948 22 1 5.5301 -9.4665 2.0085 23 7 4.1508 0.4707 0.0045 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2164 3.6676 -0.0019 30 1 5.6808 3.9731 -0.0011 31 1 7.1327 1.9582 -0.0004 32 1 7.2369 -0.4508 -0.0733 33 1 7.4607 -2.7601 0.2091 34 1 5.2607 -4.2180 1.2140 35 1 5.2752 -4.3761 -0.5589 36 1 7.6122 -5.2007 -0.4654 37 1 7.5970 -5.0423 1.3075 38 1 9.0311 -8.3838 0.7249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613221247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:43 Heat of formation + Delta-G solvation = -27.499127 kcal Electronic energy + Delta-G solvation = -20949.835211 eV Core-core repulsion = 17600.172596 eV Total energy + Delta-G solvation = -3349.662615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93337 -39.54000 -37.94869 -35.14547 -34.42367 -32.88988 -32.29715 -31.68830 -29.90666 -28.80517 -25.07062 -24.11526 -23.12672 -22.46680 -21.07264 -20.55607 -18.94147 -18.00244 -16.96874 -16.29766 -16.25728 -16.10484 -15.65024 -15.37726 -14.53383 -14.45677 -14.07025 -13.93683 -13.60363 -13.33217 -13.26799 -12.58770 -12.46542 -12.30182 -12.26571 -11.46101 -11.22631 -11.09975 -10.92323 -10.66925 -10.43866 -10.27176 -10.26946 -9.65267 -9.52301 -9.36738 -9.07834 -8.56552 -8.38496 -8.01410 -6.11051 -4.13900 1.14742 1.28134 2.61164 3.07278 3.30476 3.34266 3.37748 3.40432 3.94331 4.14123 4.40412 4.62318 4.91041 4.91966 5.07308 5.08324 5.15757 5.25572 5.26161 5.47723 5.73913 5.79559 5.88817 6.00301 6.09346 6.12710 6.21701 6.34857 6.62088 6.72675 6.84405 6.90342 7.32544 7.51357 7.59808 7.86586 7.88783 8.22174 8.35169 8.86892 8.92860 9.50963 11.00583 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.003304 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.091297 B = 8471.799163 C = 9639.320712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 O -0.309 6.309 4 C 0.355 3.645 5 C -0.235 4.235 6 C -0.014 4.014 7 C -0.256 4.256 8 C 0.428 3.572 9 N -0.672 5.672 10 C 0.687 3.313 11 O -0.536 6.536 12 N -0.734 5.734 13 C 0.141 3.859 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.528 5.528 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.414 0.586 33 H 0.393 0.607 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 21.296 -1.601 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.007 4.007 3 O -0.217 6.217 4 C 0.174 3.826 5 C -0.257 4.257 6 C -0.039 4.039 7 C -0.280 4.280 8 C 0.195 3.805 9 N -0.321 5.321 10 C 0.386 3.614 11 O -0.408 6.408 12 N -0.389 5.389 13 C 0.018 3.982 14 C -0.024 4.024 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 N -0.257 5.257 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.250 0.750 33 H 0.227 0.773 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.081 20.242 -1.562 21.502 hybrid contribution 1.170 -0.385 0.045 1.233 sum -5.911 19.857 -1.517 20.773 Atomic orbital electron populations 1.21825 0.93429 1.02875 1.02720 1.22611 0.93990 0.80365 1.03697 1.86190 1.16728 1.31359 1.87374 1.19606 0.84068 0.89058 0.89861 1.20892 0.95805 0.95535 1.13507 1.21064 0.92011 0.98603 0.92267 1.21221 1.01228 0.90993 1.14579 1.17727 0.86788 0.85252 0.90755 1.42946 1.09904 1.03956 1.75277 1.16167 0.86196 0.79980 0.79074 1.90984 1.11513 1.84245 1.54021 1.45616 1.09316 1.06384 1.77553 1.21639 0.97639 0.78274 1.00632 1.19324 0.93191 0.92103 0.97797 1.21004 0.93263 0.90799 1.51017 0.92250 1.24992 0.94822 0.99457 0.94984 1.69945 1.03238 1.30053 1.50106 0.86561 0.78820 0.83257 0.78838 1.20089 1.21244 1.20085 1.67208 1.04039 1.32411 1.22055 0.91968 0.91989 0.90283 0.91193 0.91050 0.84450 0.84025 0.84575 0.75014 0.77336 0.92620 0.92602 0.95930 0.95930 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.07 0.95 6.03 37.16 0.22 1.17 16 3 O -0.31 -4.41 10.11 -18.72 -0.19 -4.60 16 4 C 0.35 5.13 7.48 -17.14 -0.13 5.00 16 5 C -0.24 -2.59 10.04 -39.25 -0.39 -2.98 16 6 C -0.01 -0.13 10.16 -39.35 -0.40 -0.53 16 7 C -0.26 -2.58 9.93 -39.23 -0.39 -2.97 16 8 C 0.43 5.97 7.42 -154.69 -1.15 4.82 16 9 N -0.67 -8.95 5.39 -15.83 -0.09 -9.04 16 10 C 0.69 12.08 8.52 -86.92 -0.74 11.34 16 11 O -0.54 -11.46 14.60 5.30 0.08 -11.38 16 12 N -0.73 -12.65 5.56 -65.23 -0.36 -13.01 16 13 C 0.14 2.97 5.61 -4.05 -0.02 2.95 16 14 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 15 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 19 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 N -0.53 -8.66 6.73 -12.44 -0.08 -8.74 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 28 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 29 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.41 3.76 8.71 -40.82 -0.36 3.41 16 33 H 0.39 5.67 8.49 -40.82 -0.35 5.32 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -33.68 332.31 -8.40 -42.09 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.31 Total: 3.95 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -3.17 Total: 4.68 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.20 Total: -56.01 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.11 Total: -15.98 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.68 -8.40 -42.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613221247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.588 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds