Wall clock time and date at job start Tue Mar 31 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47516 * 2 1 4 4 C 1.35673 * 117.00303 * 180.02562 * 3 2 1 5 5 C 1.38816 * 119.64063 * 179.97438 * 4 3 2 6 6 C 1.38555 * 119.25380 * 179.97438 * 5 4 3 7 7 C 1.38554 * 118.56039 * 359.97438 * 6 5 4 8 8 C 1.38874 * 119.22526 * 0.02562 * 7 6 5 9 9 N 1.39397 * 119.65924 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00140 * 174.92104 * 9 8 7 11 11 O 1.21579 * 120.00060 * 5.08971 * 10 9 8 12 12 N 1.34778 * 120.00212 * 185.08674 * 10 9 8 13 13 C 1.46498 * 120.00228 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47034 * 180.02562 * 13 12 10 15 15 C 1.50707 * 109.47154 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99565 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99689 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47248 * 59.99781 * 19 17 15 21 21 H 1.48505 * 109.46973 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47021 * 299.99374 * 19 17 15 23 23 N 1.32294 * 119.64098 * 359.72201 * 4 3 2 24 24 H 1.09000 * 109.47006 * 300.00151 * 1 2 3 25 25 H 1.09000 * 109.46950 * 60.00202 * 1 2 3 26 26 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46697 * 239.99422 * 2 1 3 28 28 H 1.09000 * 109.46950 * 119.99798 * 2 1 3 29 29 H 1.07996 * 120.37444 * 359.95240 * 5 4 3 30 30 H 1.07999 * 120.71709 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.38150 * 179.97438 * 7 6 5 32 32 H 0.96996 * 119.99586 * 354.91833 * 9 8 7 33 33 H 0.96999 * 119.99828 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47141 * 300.00571 * 13 12 10 35 35 H 1.09000 * 109.46890 * 60.00419 * 13 12 10 36 36 H 1.09001 * 109.47392 * 300.00135 * 14 13 12 37 37 H 1.09000 * 109.47171 * 60.00308 * 14 13 12 38 38 H 0.97000 * 119.99486 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3515 1.5249 -0.0005 5 6 3.8740 2.8110 -0.0011 6 6 5.2488 2.9832 -0.0011 7 6 6.0574 1.8581 0.0000 8 6 5.4689 0.6002 0.0005 9 7 6.2737 -0.5379 0.0011 10 6 5.7136 -1.7594 0.1049 11 8 4.5034 -1.8751 0.1049 12 7 6.4951 -2.8525 0.2088 13 6 5.8863 -4.1802 0.3222 14 6 6.9863 -5.2384 0.4262 15 6 6.3600 -6.6043 0.5423 16 1 5.2850 -6.7070 0.5423 17 6 7.1595 -7.7224 0.6494 18 7 8.4687 -7.5971 0.6498 19 14 6.3831 -9.4153 0.7940 20 1 5.5514 -9.6827 -0.4068 21 1 7.4508 -10.4425 0.8948 22 1 5.5301 -9.4665 2.0085 23 7 4.1508 0.4707 0.0045 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2164 3.6676 -0.0019 30 1 5.6808 3.9731 -0.0011 31 1 7.1327 1.9582 -0.0004 32 1 7.2369 -0.4508 -0.0733 33 1 7.4607 -2.7601 0.2091 34 1 5.2607 -4.2180 1.2140 35 1 5.2752 -4.3761 -0.5589 36 1 7.6122 -5.2007 -0.4654 37 1 7.5970 -5.0423 1.3075 38 1 9.0311 -8.3838 0.7249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613221247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:42 Heat of formation + Delta-G solvation = -51.780148 kcal Electronic energy + Delta-G solvation = -20950.888116 eV Core-core repulsion = 17600.172596 eV Total energy + Delta-G solvation = -3350.715519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99101 -40.77973 -39.01616 -36.70608 -35.74445 -34.82196 -33.24117 -32.73179 -31.54718 -29.97725 -26.85358 -25.22231 -24.17713 -23.58491 -22.81502 -21.85712 -20.06510 -19.25972 -18.49927 -17.97223 -17.34930 -16.88032 -16.77331 -16.72929 -16.45411 -15.90139 -15.40346 -15.19534 -14.79216 -14.69691 -14.31873 -14.14387 -13.50860 -13.42359 -13.23221 -13.03978 -12.93421 -12.54348 -12.44705 -12.28091 -11.98919 -11.73228 -11.57768 -11.36661 -11.34350 -10.61533 -10.57833 -10.24109 -10.01230 -8.99495 -8.24611 -6.34815 0.19387 0.43971 1.40010 1.43934 1.45131 1.52731 2.09225 2.11068 2.40336 2.93360 3.00130 3.10351 3.58769 4.04890 4.05622 4.09871 4.19604 4.37253 4.43839 4.47261 4.49706 4.51315 4.84302 4.86455 4.92076 4.95836 5.14610 5.25869 5.26989 5.30012 5.48360 5.58441 5.61467 5.74652 5.82181 6.15860 6.30143 6.73870 6.78431 7.19256 7.34382 7.55255 8.87080 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.003304 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.091297 B = 8471.799163 C = 9639.320712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 O -0.316 6.316 4 C 0.315 3.685 5 C -0.225 4.225 6 C -0.004 4.004 7 C -0.233 4.233 8 C 0.388 3.612 9 N -0.657 5.657 10 C 0.687 3.313 11 O -0.579 6.579 12 N -0.727 5.727 13 C 0.163 3.837 14 C 0.025 3.975 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.269 1.269 23 N -0.571 5.571 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.161 0.839 30 H 0.191 0.809 31 H 0.176 0.824 32 H 0.434 0.566 33 H 0.409 0.591 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.999 23.288 -1.642 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.001 3.999 3 O -0.224 6.224 4 C 0.136 3.864 5 C -0.247 4.247 6 C -0.029 4.029 7 C -0.256 4.256 8 C 0.157 3.843 9 N -0.307 5.307 10 C 0.386 3.614 11 O -0.454 6.454 12 N -0.383 5.383 13 C 0.038 3.962 14 C -0.013 4.013 15 C -0.587 4.587 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.194 1.194 23 N -0.301 5.301 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.179 0.821 30 H 0.209 0.791 31 H 0.193 0.807 32 H 0.274 0.726 33 H 0.245 0.755 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.503 22.294 -1.607 23.279 hybrid contribution 1.069 -0.851 0.051 1.367 sum -5.434 21.443 -1.557 22.176 Atomic orbital electron populations 1.21800 0.90511 1.03836 1.03746 1.22469 0.96167 0.80324 1.00983 1.86174 1.17359 1.30937 1.87914 1.20096 0.83923 0.90166 0.92231 1.21327 0.97374 0.94602 1.11410 1.21677 0.90862 1.00382 0.90010 1.21681 1.03332 0.89312 1.11286 1.18204 0.86446 0.86465 0.93176 1.42602 1.10912 1.02449 1.74766 1.16279 0.85585 0.80986 0.78532 1.90966 1.13479 1.85154 1.55820 1.45252 1.10047 1.05194 1.77772 1.21084 0.96178 0.79448 0.99444 1.19119 0.93466 0.92220 0.96448 1.21434 0.93531 0.92488 1.51230 0.92371 1.25849 0.95312 1.03437 0.94449 1.70046 1.04462 1.31281 1.50729 0.85514 0.78110 0.78423 0.79105 1.19380 1.20521 1.19387 1.66999 1.05755 1.34346 1.23008 0.90933 0.90836 0.89368 0.93815 0.93908 0.82139 0.79138 0.80673 0.72603 0.75545 0.93891 0.93809 0.97124 0.97164 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 10.28 71.98 0.74 -2.20 16 2 C 0.08 2.26 6.03 71.98 0.43 2.70 16 3 O -0.32 -9.31 10.11 -89.90 -0.91 -10.22 16 4 C 0.32 9.17 7.48 84.76 0.63 9.81 16 5 C -0.23 -4.42 10.04 22.48 0.23 -4.19 16 6 C 0.00 -0.06 10.16 22.42 0.23 0.17 16 7 C -0.23 -3.85 9.93 22.50 0.22 -3.63 16 8 C 0.39 10.49 7.42 132.85 0.99 11.47 16 9 N -0.66 -17.05 5.39 -322.27 -1.74 -18.79 16 10 C 0.69 24.68 8.52 179.06 1.53 26.21 16 11 O -0.58 -26.02 14.60 -3.96 -0.06 -26.08 16 12 N -0.73 -25.43 5.56 -478.56 -2.66 -28.09 16 13 C 0.16 7.09 5.61 86.38 0.48 7.58 16 14 C 0.03 1.26 5.09 29.85 0.15 1.41 16 15 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.01 0.47 5.46 84.65 0.46 0.94 16 18 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 19 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 N -0.57 -19.25 6.73 -306.13 -2.06 -21.31 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.48 8.11 -2.39 -0.02 1.46 16 28 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 29 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.43 7.10 8.71 -92.71 -0.81 6.30 16 33 H 0.41 11.68 8.49 -92.71 -0.79 10.90 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -76.40 332.31 0.70 -75.70 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.51 Total: 17.12 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 6.33 Total: 19.77 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.17 Total: -121.97 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.97 Total: -36.29 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.40 0.70 -75.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613221247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.922 kcal (2) G-P(sol) polarization free energy of solvation -76.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds