Wall clock time and date at job start Tue Mar 31 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35952 * 116.99975 * 2 1 4 4 C 1.38658 * 120.06270 * 359.97438 * 3 2 1 5 5 C 1.38187 * 119.96866 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.09331 * 359.74438 * 5 4 3 7 7 C 1.38254 * 120.12415 * 0.51404 * 6 5 4 8 8 C 1.50700 * 119.98196 * 179.76407 * 7 6 5 9 9 N 1.46894 * 109.47248 * 259.72328 * 8 7 6 10 10 C 1.46902 * 111.00436 * 185.06858 * 9 8 7 11 11 C 1.53001 * 109.47332 * 174.63177 * 10 9 8 12 12 C 1.50693 * 115.54919 * 65.22899 * 11 10 9 13 13 H 1.08004 * 119.99505 * 264.81935 * 12 11 10 14 14 C 1.37876 * 120.00363 * 84.82037 * 12 11 10 15 15 N 1.31513 * 119.99849 * 184.65787 * 14 12 11 16 16 Si 1.86800 * 119.99904 * 4.66710 * 14 12 11 17 17 H 1.48497 * 109.47118 * 94.51140 * 16 14 12 18 18 H 1.48496 * 109.46841 * 214.51872 * 16 14 12 19 19 H 1.48505 * 109.46961 * 334.51233 * 16 14 12 20 20 C 1.53004 * 117.49662 * 279.55669 * 11 10 9 21 21 C 1.53004 * 117.49542 * 210.89819 * 11 10 9 22 22 C 1.38327 * 120.03462 * 359.48789 * 7 6 5 23 23 F 1.35099 * 120.05201 * 180.28053 * 22 7 6 24 24 H 1.09000 * 109.47132 * 59.99766 * 1 2 3 25 25 H 1.08997 * 109.47559 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47091 * 300.00023 * 1 2 3 27 27 H 1.08003 * 120.01733 * 0.04643 * 4 3 2 28 28 H 1.08002 * 119.95301 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.93530 * 180.25788 * 6 5 4 30 30 H 1.09004 * 109.47286 * 139.72563 * 8 7 6 31 31 H 1.09003 * 109.47578 * 19.72398 * 8 7 6 32 32 H 1.00899 * 111.00184 * 61.11035 * 9 8 7 33 33 H 1.09001 * 109.47267 * 294.63735 * 10 9 8 34 34 H 1.09003 * 109.46636 * 54.63208 * 10 9 8 35 35 H 0.97003 * 119.99521 * 179.97438 * 15 14 12 36 36 H 1.08997 * 117.49994 * 359.97438 * 20 11 10 37 37 H 1.08996 * 117.49638 * 145.02479 * 20 11 10 38 38 H 1.09005 * 117.49621 * 214.97841 * 21 11 10 39 39 H 1.08995 * 117.49950 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3024 3.6776 0.0043 7 6 4.0579 2.5198 -0.0006 8 6 5.5626 2.6024 -0.0001 9 7 6.0652 2.3883 -1.3637 10 6 7.5334 2.3423 -1.3826 11 6 8.0145 1.9859 -2.7906 12 6 7.7121 3.0055 -3.8582 13 1 6.8280 2.9011 -4.4697 14 6 8.5641 4.0717 -4.0544 15 7 8.2541 5.0100 -4.9222 16 14 10.1587 4.1832 -3.0878 17 1 11.2640 3.5962 -3.8871 18 1 10.4614 5.6071 -2.7950 19 1 10.0181 3.4347 -1.8129 20 6 7.9861 0.5104 -3.1944 21 6 9.3226 1.2017 -2.9127 22 6 3.4333 1.2855 -0.0001 23 9 4.1713 0.1539 0.0009 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2136 2.3200 -0.0002 28 1 1.3342 4.5115 -0.0011 29 1 3.7916 4.6405 0.0080 30 1 5.9684 1.8367 0.6610 31 1 5.8724 3.5868 0.3509 32 1 5.7175 3.0966 -1.9926 33 1 7.9312 3.3166 -1.0984 34 1 7.8823 1.5877 -0.6775 35 1 8.8534 5.7603 -5.0599 36 1 7.6251 -0.2064 -2.4569 37 1 7.7492 0.2773 -4.2324 38 1 9.9642 1.4230 -3.7656 39 1 9.8405 0.9401 -1.9901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619715435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:21 Heat of formation + Delta-G solvation = -27.707965 kcal Electronic energy + Delta-G solvation = -21537.493414 eV Core-core repulsion = 18167.901781 eV Total energy + Delta-G solvation = -3369.591633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.49256 -40.02723 -37.94023 -37.10195 -34.53814 -32.04463 -30.90677 -30.24157 -27.55270 -26.57117 -25.28586 -23.27453 -22.54397 -21.50667 -21.07457 -18.93166 -18.04437 -17.01888 -16.90705 -16.21876 -16.11425 -15.18542 -14.98854 -14.86289 -14.63065 -14.47551 -13.97071 -13.79376 -13.53042 -12.96689 -12.65902 -12.52150 -12.37226 -12.00032 -11.76809 -11.65661 -11.44228 -11.20879 -11.05334 -10.90454 -10.72654 -10.35202 -9.99985 -9.43123 -8.95069 -8.77806 -8.57013 -8.32382 -8.19198 -7.66167 -6.07731 -4.09462 1.12837 1.26813 3.03758 3.30978 3.40429 3.47067 3.54846 4.31703 4.45849 4.60807 4.68412 4.86842 4.93471 4.95004 5.15496 5.18261 5.21766 5.24369 5.27650 5.40521 5.69115 5.82429 5.93585 5.97981 6.10383 6.21585 6.24717 6.28670 6.42302 6.45579 6.54407 6.62679 6.63287 6.89138 7.15812 7.23090 7.27336 7.75707 7.82175 8.13634 8.58149 8.98252 9.56883 11.03940 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.004325 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.900655 B = 6472.027837 C = 6927.731540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.087 3.913 4 C -0.187 4.187 5 C -0.093 4.093 6 C -0.121 4.121 7 C -0.070 4.070 8 C 0.095 3.905 9 N -0.671 5.671 10 C 0.102 3.898 11 C 0.007 3.993 12 C -0.483 4.483 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.900 5.900 16 Si 0.877 3.123 17 H -0.281 1.281 18 H -0.296 1.296 19 H -0.256 1.256 20 C -0.168 4.168 21 C -0.205 4.205 22 C 0.096 3.904 23 F -0.124 7.124 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.355 0.645 33 H 0.025 0.975 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 -4.497 12.816 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.041 3.959 4 C -0.206 4.206 5 C -0.112 4.112 6 C -0.140 4.140 7 C -0.072 4.072 8 C -0.034 4.034 9 N -0.303 5.303 10 C -0.027 4.027 11 C 0.006 3.994 12 C -0.520 4.520 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.537 5.537 16 Si 0.705 3.295 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.180 1.180 20 C -0.205 4.205 21 C -0.243 4.243 22 C 0.075 3.925 23 F -0.102 7.102 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.175 0.825 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.785 -5.244 12.759 19.502 hybrid contribution 0.992 1.053 0.455 1.516 sum -12.794 -4.191 13.214 18.864 Atomic orbital electron populations 1.23070 0.78310 1.04016 1.01315 1.86139 1.21394 1.25974 1.88944 1.19001 0.90825 0.85512 1.00580 1.21062 0.99948 0.91618 1.07971 1.20923 0.94481 0.97064 0.98695 1.20938 0.93559 0.97775 1.01718 1.19832 0.96917 0.90892 0.99557 1.20800 0.88654 1.00352 0.93574 1.60354 1.09764 1.54869 1.05303 1.21614 0.86100 0.98085 0.96938 1.19317 0.95185 0.91359 0.93549 1.20324 1.10127 1.05678 1.15919 0.90415 1.24994 0.97898 0.95053 0.94692 1.69917 1.37307 1.11123 1.35398 0.86871 0.84319 0.76398 0.81888 1.20693 1.22362 1.17968 1.22697 1.00091 0.97055 1.00702 1.22991 0.91732 1.08423 1.01139 1.16736 0.85459 0.82946 1.07311 1.91509 1.76395 1.48481 1.93830 0.92489 0.88169 0.92692 0.84888 0.85224 0.84914 0.90417 0.94173 0.82485 0.95651 0.93511 0.92733 0.90850 0.90025 0.89822 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.11 10.36 -19.59 -0.20 -4.31 16 3 C 0.09 1.20 6.69 -39.18 -0.26 0.94 16 4 C -0.19 -2.08 9.04 -39.44 -0.36 -2.43 16 5 C -0.09 -1.01 10.04 -39.59 -0.40 -1.41 16 6 C -0.12 -1.52 9.66 -39.57 -0.38 -1.91 16 7 C -0.07 -1.05 5.44 -104.58 -0.57 -1.62 16 8 C 0.10 1.53 5.53 -4.98 -0.03 1.50 16 9 N -0.67 -13.07 6.43 -115.06 -0.74 -13.81 16 10 C 0.10 2.14 5.15 -3.82 -0.02 2.12 16 11 C 0.01 0.17 0.99 -155.66 -0.15 0.01 16 12 C -0.48 -13.28 8.92 -34.44 -0.31 -13.59 16 13 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 16 Si 0.88 21.57 24.94 -169.99 -4.24 17.33 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.26 -5.94 5.69 56.52 0.32 -5.62 16 20 C -0.17 -3.65 9.96 -26.69 -0.27 -3.91 16 21 C -0.20 -4.50 7.31 -26.69 -0.20 -4.70 16 22 C 0.10 1.53 7.25 -39.30 -0.29 1.25 16 23 F -0.12 -2.22 16.51 2.25 0.04 -2.19 16 24 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 28 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.13 1.47 8.03 -52.49 -0.42 1.05 16 30 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16 31 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 32 H 0.36 7.37 8.35 -39.29 -0.33 7.04 16 33 H 0.03 0.55 7.06 -51.93 -0.37 0.18 16 34 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.08 1.91 7.13 -51.93 -0.37 1.54 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -31.25 326.51 -7.39 -38.63 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.61 Total: 6.19 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.33 Total: -20.51 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.03 Total: -40.07 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.20 Total: -4.31 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.24 Total: 17.33 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.25 -7.39 -38.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619715435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.924 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds