Wall clock time and date at job start Tue Mar 31 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35952 * 116.99975 * 2 1 4 4 C 1.38658 * 120.06270 * 359.97438 * 3 2 1 5 5 C 1.38187 * 119.96866 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.09331 * 359.74438 * 5 4 3 7 7 C 1.38254 * 120.12415 * 0.51404 * 6 5 4 8 8 C 1.50700 * 119.98196 * 179.76407 * 7 6 5 9 9 N 1.46894 * 109.47248 * 259.72328 * 8 7 6 10 10 C 1.46902 * 111.00436 * 185.06858 * 9 8 7 11 11 C 1.53001 * 109.47332 * 174.63177 * 10 9 8 12 12 C 1.50693 * 115.54919 * 65.22899 * 11 10 9 13 13 H 1.08004 * 119.99505 * 264.81935 * 12 11 10 14 14 C 1.37876 * 120.00363 * 84.82037 * 12 11 10 15 15 N 1.31513 * 119.99849 * 184.65787 * 14 12 11 16 16 Si 1.86800 * 119.99904 * 4.66710 * 14 12 11 17 17 H 1.48497 * 109.47118 * 94.51140 * 16 14 12 18 18 H 1.48496 * 109.46841 * 214.51872 * 16 14 12 19 19 H 1.48505 * 109.46961 * 334.51233 * 16 14 12 20 20 C 1.53004 * 117.49662 * 279.55669 * 11 10 9 21 21 C 1.53004 * 117.49542 * 210.89819 * 11 10 9 22 22 C 1.38327 * 120.03462 * 359.48789 * 7 6 5 23 23 F 1.35099 * 120.05201 * 180.28053 * 22 7 6 24 24 H 1.09000 * 109.47132 * 59.99766 * 1 2 3 25 25 H 1.08997 * 109.47559 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47091 * 300.00023 * 1 2 3 27 27 H 1.08003 * 120.01733 * 0.04643 * 4 3 2 28 28 H 1.08002 * 119.95301 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.93530 * 180.25788 * 6 5 4 30 30 H 1.09004 * 109.47286 * 139.72563 * 8 7 6 31 31 H 1.09003 * 109.47578 * 19.72398 * 8 7 6 32 32 H 1.00899 * 111.00184 * 61.11035 * 9 8 7 33 33 H 1.09001 * 109.47267 * 294.63735 * 10 9 8 34 34 H 1.09003 * 109.46636 * 54.63208 * 10 9 8 35 35 H 0.97003 * 119.99521 * 179.97438 * 15 14 12 36 36 H 1.08997 * 117.49994 * 359.97438 * 20 11 10 37 37 H 1.08996 * 117.49638 * 145.02479 * 20 11 10 38 38 H 1.09005 * 117.49621 * 214.97841 * 21 11 10 39 39 H 1.08995 * 117.49950 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3024 3.6776 0.0043 7 6 4.0579 2.5198 -0.0006 8 6 5.5626 2.6024 -0.0001 9 7 6.0652 2.3883 -1.3637 10 6 7.5334 2.3423 -1.3826 11 6 8.0145 1.9859 -2.7906 12 6 7.7121 3.0055 -3.8582 13 1 6.8280 2.9011 -4.4697 14 6 8.5641 4.0717 -4.0544 15 7 8.2541 5.0100 -4.9222 16 14 10.1587 4.1832 -3.0878 17 1 11.2640 3.5962 -3.8871 18 1 10.4614 5.6071 -2.7950 19 1 10.0181 3.4347 -1.8129 20 6 7.9861 0.5104 -3.1944 21 6 9.3226 1.2017 -2.9127 22 6 3.4333 1.2855 -0.0001 23 9 4.1713 0.1539 0.0009 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2136 2.3200 -0.0002 28 1 1.3342 4.5115 -0.0011 29 1 3.7916 4.6405 0.0080 30 1 5.9684 1.8367 0.6610 31 1 5.8724 3.5868 0.3509 32 1 5.7175 3.0966 -1.9926 33 1 7.9312 3.3166 -1.0984 34 1 7.8823 1.5877 -0.6775 35 1 8.8534 5.7603 -5.0599 36 1 7.6251 -0.2064 -2.4569 37 1 7.7492 0.2773 -4.2324 38 1 9.9642 1.4230 -3.7656 39 1 9.8405 0.9401 -1.9901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619715435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:21 Heat of formation + Delta-G solvation = -48.440183 kcal Electronic energy + Delta-G solvation = -21538.392431 eV Core-core repulsion = 18167.901781 eV Total energy + Delta-G solvation = -3370.490649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.70762 -40.95649 -39.22858 -38.54074 -35.94107 -34.20055 -32.06073 -31.16843 -28.47625 -28.04225 -27.05332 -24.71889 -23.51733 -23.22573 -22.18254 -20.82461 -19.05739 -18.23154 -18.05162 -17.88561 -17.11651 -16.81794 -16.49391 -16.04517 -15.60730 -15.56261 -15.45618 -15.37051 -14.77517 -14.72746 -14.19995 -13.80309 -13.44205 -13.27098 -13.17289 -13.00673 -12.77008 -12.58821 -12.40031 -12.16072 -12.02419 -11.94828 -11.82424 -11.35227 -10.94208 -10.55985 -10.25202 -9.76280 -9.21629 -9.14454 -8.25954 -6.31697 0.13084 0.28932 1.36729 1.40321 1.53848 2.21851 2.40034 2.55953 3.07559 3.15828 3.33992 3.60426 3.77037 3.91219 4.08092 4.17510 4.21017 4.28692 4.40493 4.41359 4.43632 4.53572 4.58061 4.72527 4.74666 4.75456 4.84249 4.89299 5.04919 5.12026 5.14045 5.31024 5.39073 5.44458 5.51828 5.69079 5.76777 6.23805 6.34644 6.39204 6.52022 6.78130 7.37592 8.89385 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.004325 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.900655 B = 6472.027837 C = 6927.731540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.078 3.922 4 C -0.179 4.179 5 C -0.083 4.083 6 C -0.129 4.129 7 C -0.086 4.086 8 C 0.099 3.901 9 N -0.680 5.680 10 C 0.109 3.891 11 C -0.016 4.016 12 C -0.478 4.478 13 H 0.030 0.970 14 C 0.023 3.977 15 N -0.948 5.948 16 Si 0.936 3.064 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.230 1.230 20 C -0.160 4.160 21 C -0.194 4.194 22 C 0.056 3.944 23 F -0.146 7.146 24 H 0.068 0.932 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.168 0.832 28 H 0.167 0.833 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.343 0.657 33 H 0.018 0.982 34 H 0.065 0.935 35 H 0.264 0.736 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 -4.509 14.846 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.032 3.968 4 C -0.197 4.197 5 C -0.101 4.101 6 C -0.147 4.147 7 C -0.087 4.087 8 C -0.030 4.030 9 N -0.311 5.311 10 C -0.020 4.020 11 C -0.017 4.017 12 C -0.516 4.516 13 H 0.049 0.951 14 C -0.174 4.174 15 N -0.588 5.588 16 Si 0.761 3.239 17 H -0.203 1.203 18 H -0.225 1.225 19 H -0.152 1.152 20 C -0.198 4.198 21 C -0.232 4.232 22 C 0.035 3.965 23 F -0.125 7.125 24 H 0.087 0.913 25 H 0.135 0.865 26 H 0.093 0.907 27 H 0.186 0.814 28 H 0.184 0.816 29 H 0.164 0.836 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.561 -5.287 14.811 21.433 hybrid contribution 1.016 1.025 -0.232 1.462 sum -13.545 -4.263 14.579 20.352 Atomic orbital electron populations 1.23424 0.75702 1.05785 1.02770 1.86105 1.24173 1.26106 1.88891 1.19194 0.90389 0.86759 1.00461 1.21484 1.01558 0.90618 1.06066 1.21375 0.93948 0.98422 0.96326 1.21201 0.94602 0.97466 1.01471 1.19822 0.96346 0.91538 1.01021 1.20801 0.89720 1.00985 0.91495 1.60330 1.08943 1.54671 1.07182 1.21473 0.87026 0.98139 0.95376 1.19304 0.97351 0.91221 0.93819 1.20384 1.08281 1.06800 1.16135 0.95145 1.25765 1.01316 0.94597 0.95735 1.70057 1.38894 1.12162 1.37703 0.85918 0.79844 0.76543 0.81548 1.20328 1.22520 1.15227 1.22681 1.00169 0.96278 1.00625 1.23036 0.91192 1.06950 1.02029 1.17164 0.86665 0.82656 1.09967 1.91431 1.77085 1.49630 1.94349 0.91349 0.86493 0.90730 0.81446 0.81579 0.83596 0.90479 0.92775 0.83864 0.96418 0.91630 0.92702 0.88959 0.91152 0.90853 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -8.67 10.36 -93.01 -0.96 -9.63 16 3 C 0.08 2.09 6.69 22.53 0.15 2.24 16 4 C -0.18 -3.47 9.04 22.36 0.20 -3.26 16 5 C -0.08 -1.54 10.04 22.26 0.22 -1.32 16 6 C -0.13 -3.03 9.66 22.28 0.22 -2.81 16 7 C -0.09 -2.54 5.44 -19.84 -0.11 -2.65 16 8 C 0.10 3.11 5.53 85.56 0.47 3.59 16 9 N -0.68 -26.55 6.43 -517.93 -3.33 -29.88 16 10 C 0.11 4.45 5.15 86.30 0.44 4.90 16 11 C -0.02 -0.73 0.99 -52.93 -0.05 -0.79 16 12 C -0.48 -26.98 8.92 25.60 0.23 -26.75 16 13 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 14 C 0.02 1.32 5.47 84.65 0.46 1.79 16 15 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 16 Si 0.94 44.09 24.94 68.60 1.71 45.80 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 19 H -0.23 -9.78 5.69 99.48 0.57 -9.21 16 20 C -0.16 -6.79 9.96 30.62 0.30 -6.49 16 21 C -0.19 -8.10 7.31 30.62 0.22 -7.87 16 22 C 0.06 1.79 7.25 22.45 0.16 1.96 16 23 F -0.15 -5.42 16.51 44.97 0.74 -4.68 16 24 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 25 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 27 H 0.17 2.00 6.30 -2.91 -0.02 1.98 16 28 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.15 2.96 8.03 -2.91 -0.02 2.94 16 30 H 0.08 2.41 7.89 -2.39 -0.02 2.39 16 31 H 0.05 1.54 8.00 -2.39 -0.02 1.52 16 32 H 0.34 14.61 8.35 -89.69 -0.75 13.86 16 33 H 0.02 0.74 7.06 -2.39 -0.02 0.73 16 34 H 0.07 2.42 8.03 -2.39 -0.02 2.41 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.07 3.21 7.13 -2.38 -0.02 3.20 16 39 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -70.10 326.51 2.67 -67.43 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.17 Total: 25.42 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: 4.04 Total: -36.12 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -3.03 Total: -88.22 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.96 Total: -9.63 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.74 Total: -4.68 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.71 Total: 45.80 kcal Total: -70.10 2.67 -67.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619715435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.992 kcal (2) G-P(sol) polarization free energy of solvation -70.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds