Wall clock time and date at job start Tue Mar 31 2020 01:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35750 * 116.99384 * 2 1 4 4 C 1.38913 * 119.60659 * 180.25460 * 3 2 1 5 5 C 1.38316 * 119.18468 * 180.24808 * 4 3 2 6 6 C 1.39377 * 118.42863 * 359.50210 * 5 4 3 7 7 N 1.40136 * 120.42808 * 180.27240 * 6 5 4 8 8 C 1.34782 * 120.00211 * 32.66402 * 7 6 5 9 9 O 1.21292 * 119.99583 * 5.26703 * 8 7 6 10 10 C 1.50697 * 120.00428 * 185.26854 * 8 7 6 11 11 H 1.09002 * 109.46733 * 319.99534 * 10 8 7 12 12 N 1.46896 * 109.46985 * 200.00219 * 10 8 7 13 13 C 1.52997 * 109.47411 * 79.99591 * 10 8 7 14 14 C 1.52998 * 109.47399 * 185.00085 * 13 10 8 15 15 C 1.50699 * 109.47128 * 180.02562 * 14 13 10 16 16 H 1.07997 * 120.00057 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99777 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99686 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00076 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47093 * 89.99909 * 19 17 15 21 21 H 1.48495 * 109.46835 * 210.00048 * 19 17 15 22 22 H 1.48500 * 109.46695 * 329.99785 * 19 17 15 23 23 C 1.38655 * 119.14695 * 0.25180 * 6 5 4 24 24 N 1.31946 * 120.73969 * 359.97438 * 23 6 5 25 25 H 1.09003 * 109.47554 * 300.00103 * 1 2 3 26 26 H 1.09006 * 109.47154 * 60.00657 * 1 2 3 27 27 H 1.09005 * 109.47171 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.40659 * 0.02738 * 4 3 2 29 29 H 1.08003 * 120.78477 * 179.77563 * 5 4 3 30 30 H 0.97002 * 120.00479 * 212.66306 * 7 6 5 31 31 H 1.00901 * 111.00139 * 176.04548 * 12 10 8 32 32 H 1.00903 * 110.99903 * 299.99111 * 12 10 8 33 33 H 1.09004 * 109.46987 * 305.00359 * 13 10 8 34 34 H 1.09000 * 109.46570 * 65.00139 * 13 10 8 35 35 H 1.08997 * 109.46953 * 300.00165 * 14 13 10 36 36 H 1.08998 * 109.46912 * 59.99738 * 14 13 10 37 37 H 0.97005 * 120.00127 * 179.97438 * 18 17 15 38 38 H 1.08007 * 119.63080 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2096 0.0000 4 6 3.4328 1.2729 -0.0054 5 6 4.0516 2.5100 -0.0001 6 6 3.2522 3.6517 -0.0002 7 7 3.8349 4.9262 -0.0007 8 6 5.0087 5.1302 -0.6310 9 8 5.5130 4.2367 -1.2778 10 6 5.6944 6.4685 -0.5322 11 1 4.9505 7.2631 -0.5909 12 7 6.6513 6.6112 -1.6376 13 6 6.4379 6.5634 0.8016 14 6 7.0297 7.9658 0.9570 15 6 7.7625 8.0590 2.2705 16 1 7.8019 7.2037 2.9287 17 6 8.3819 9.2365 2.6322 18 7 9.0210 9.3180 3.7787 19 14 8.3131 10.7161 1.4939 20 1 7.1177 11.5350 1.8182 21 1 9.5382 11.5359 1.6732 22 1 8.2290 10.2533 0.0853 23 6 1.8728 3.5104 -0.0002 24 7 1.3175 2.3135 -0.0006 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 4.0213 0.3674 -0.0100 29 1 5.1287 2.5893 -0.0004 30 1 3.3937 5.6615 0.4526 31 1 7.0775 7.5257 -1.6312 32 1 7.3518 5.8857 -1.6053 33 1 5.7436 6.3694 1.6192 34 1 7.2403 5.8260 0.8234 35 1 7.7239 8.1598 0.1394 36 1 6.2273 8.7032 0.9350 37 1 9.4571 10.1464 4.0331 38 1 1.2459 4.3899 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691620785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:49 Heat of formation + Delta-G solvation = -40.516122 kcal Electronic energy + Delta-G solvation = -20929.723887 eV Core-core repulsion = 17579.496812 eV Total energy + Delta-G solvation = -3350.227074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10373 -39.87373 -37.99195 -35.84617 -34.86394 -32.89247 -32.44081 -30.41466 -29.95695 -27.60501 -26.75209 -24.29316 -23.81995 -22.64096 -20.68117 -20.05744 -18.61476 -17.98927 -17.51480 -16.92861 -16.70080 -16.16503 -15.15072 -14.91559 -14.76270 -14.52826 -14.33145 -14.26052 -13.64194 -13.52479 -13.49219 -13.04781 -12.80314 -12.74452 -12.09555 -11.97483 -11.60308 -11.48924 -11.04906 -10.69631 -10.49715 -10.18384 -10.02335 -9.94747 -9.80471 -9.41939 -9.37848 -8.67506 -8.46227 -8.08399 -6.16673 -4.16879 0.90342 1.09050 2.60791 2.78560 3.02963 3.20879 3.29610 3.30164 3.62103 4.11532 4.32727 4.56431 4.69697 4.87749 4.90118 4.99307 5.08541 5.10654 5.15870 5.29958 5.33995 5.44726 5.44901 5.57208 5.87123 6.02001 6.06396 6.20745 6.46627 6.55266 7.00520 7.03070 7.12123 7.14045 7.35798 7.59118 7.61909 7.67201 8.09325 8.38594 8.86959 9.44136 10.96456 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035117 B = 0.003066 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.143094 B = 9130.656408 C = 9376.554089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.297 3.703 4 C -0.167 4.167 5 C -0.044 4.044 6 C 0.073 3.927 7 N -0.669 5.669 8 C 0.527 3.473 9 O -0.517 6.517 10 C 0.074 3.926 11 H 0.101 0.899 12 N -0.830 5.830 13 C -0.130 4.130 14 C -0.010 4.010 15 C -0.526 4.526 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.112 3.888 24 N -0.522 5.522 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.145 0.855 29 H 0.154 0.846 30 H 0.415 0.585 31 H 0.353 0.647 32 H 0.349 0.651 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 -12.395 -8.032 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.117 3.883 4 C -0.188 4.188 5 C -0.072 4.072 6 C -0.024 4.024 7 N -0.316 5.316 8 C 0.315 3.685 9 O -0.390 6.390 10 C -0.041 4.041 11 H 0.119 0.881 12 N -0.363 5.363 13 C -0.170 4.170 14 C -0.047 4.047 15 C -0.564 4.564 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.538 5.538 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.046 4.046 24 N -0.245 5.245 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.162 0.838 29 H 0.172 0.828 30 H 0.251 0.749 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.424 -13.332 -8.879 22.942 hybrid contribution 1.137 1.603 0.618 2.060 sum -15.287 -11.729 -8.261 20.964 Atomic orbital electron populations 1.22828 0.77452 1.02769 1.02383 1.86243 1.22716 1.24467 1.88278 1.19775 0.89394 0.84585 0.94518 1.20997 0.91771 0.99244 1.06746 1.21503 1.01673 0.89859 0.94120 1.18634 0.92973 0.86191 1.04604 1.43497 1.23552 1.09496 1.55078 1.21080 0.79713 0.90915 0.76830 1.90659 1.64108 1.45202 1.39060 1.21507 0.96458 0.93205 0.92938 0.88128 1.58734 1.23211 1.09368 1.44979 1.22230 0.99572 1.01328 0.93881 1.19571 0.95821 0.91302 0.98053 1.21046 1.33176 0.99597 1.02557 0.91050 1.25050 0.94642 0.98749 0.94999 1.69907 1.34973 1.27269 1.21634 0.86756 0.77715 0.82836 0.81804 1.20241 1.21309 1.18972 1.22146 0.90702 0.94307 0.97483 1.67233 1.40203 0.98287 1.18755 0.92366 0.92411 0.88791 0.83761 0.82844 0.74871 0.83127 0.83737 0.91730 0.91866 0.96531 0.96700 0.92564 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.50 10.48 -18.96 -0.20 -3.70 16 3 C 0.30 3.66 7.49 -17.14 -0.13 3.53 16 4 C -0.17 -1.98 10.03 -39.30 -0.39 -2.37 16 5 C -0.04 -0.57 8.76 -39.13 -0.34 -0.91 16 6 C 0.07 0.88 6.31 -83.48 -0.53 0.36 16 7 N -0.67 -7.68 5.36 -9.74 -0.05 -7.73 16 8 C 0.53 7.56 6.84 -10.98 -0.08 7.49 16 9 O -0.52 -8.82 13.94 5.55 0.08 -8.75 16 10 C 0.07 1.07 3.21 -68.87 -0.22 0.85 16 11 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 12 N -0.83 -12.31 8.94 -5.66 -0.05 -12.36 16 13 C -0.13 -2.26 4.78 -26.73 -0.13 -2.38 16 14 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16 15 C -0.53 -14.13 9.66 -34.44 -0.33 -14.46 16 16 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 19 Si 0.88 20.54 27.47 -169.99 -4.67 15.88 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 23 C 0.11 1.22 11.11 -17.35 -0.19 1.02 16 24 N -0.52 -6.30 9.20 -13.17 -0.12 -6.42 16 25 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 26 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.15 2.10 6.47 -52.48 -0.34 1.76 16 30 H 0.41 3.55 8.82 -40.82 -0.36 3.19 16 31 H 0.35 5.12 7.55 -39.29 -0.30 4.82 16 32 H 0.35 5.27 8.58 -39.29 -0.34 4.93 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 36 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -32.50 324.07 -5.85 -38.36 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.00 Total: 9.98 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.50 Total: -4.04 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.55 Total: -52.61 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.12 Total: -12.45 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.50 -5.85 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691620785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.160 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds