Wall clock time and date at job start Tue Mar 31 2020 01:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35750 * 116.99384 * 2 1 4 4 C 1.38913 * 119.60659 * 180.25460 * 3 2 1 5 5 C 1.38316 * 119.18468 * 180.24808 * 4 3 2 6 6 C 1.39377 * 118.42863 * 359.50210 * 5 4 3 7 7 N 1.40136 * 120.42808 * 180.27240 * 6 5 4 8 8 C 1.34782 * 120.00211 * 32.66402 * 7 6 5 9 9 O 1.21292 * 119.99583 * 5.26703 * 8 7 6 10 10 C 1.50697 * 120.00428 * 185.26854 * 8 7 6 11 11 H 1.09002 * 109.46733 * 319.99534 * 10 8 7 12 12 N 1.46896 * 109.46985 * 200.00219 * 10 8 7 13 13 C 1.52997 * 109.47411 * 79.99591 * 10 8 7 14 14 C 1.52998 * 109.47399 * 185.00085 * 13 10 8 15 15 C 1.50699 * 109.47128 * 180.02562 * 14 13 10 16 16 H 1.07997 * 120.00057 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99777 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99686 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00076 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47093 * 89.99909 * 19 17 15 21 21 H 1.48495 * 109.46835 * 210.00048 * 19 17 15 22 22 H 1.48500 * 109.46695 * 329.99785 * 19 17 15 23 23 C 1.38655 * 119.14695 * 0.25180 * 6 5 4 24 24 N 1.31946 * 120.73969 * 359.97438 * 23 6 5 25 25 H 1.09003 * 109.47554 * 300.00103 * 1 2 3 26 26 H 1.09006 * 109.47154 * 60.00657 * 1 2 3 27 27 H 1.09005 * 109.47171 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.40659 * 0.02738 * 4 3 2 29 29 H 1.08003 * 120.78477 * 179.77563 * 5 4 3 30 30 H 0.97002 * 120.00479 * 212.66306 * 7 6 5 31 31 H 1.00901 * 111.00139 * 176.04548 * 12 10 8 32 32 H 1.00903 * 110.99903 * 299.99111 * 12 10 8 33 33 H 1.09004 * 109.46987 * 305.00359 * 13 10 8 34 34 H 1.09000 * 109.46570 * 65.00139 * 13 10 8 35 35 H 1.08997 * 109.46953 * 300.00165 * 14 13 10 36 36 H 1.08998 * 109.46912 * 59.99738 * 14 13 10 37 37 H 0.97005 * 120.00127 * 179.97438 * 18 17 15 38 38 H 1.08007 * 119.63080 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2096 0.0000 4 6 3.4328 1.2729 -0.0054 5 6 4.0516 2.5100 -0.0001 6 6 3.2522 3.6517 -0.0002 7 7 3.8349 4.9262 -0.0007 8 6 5.0087 5.1302 -0.6310 9 8 5.5130 4.2367 -1.2778 10 6 5.6944 6.4685 -0.5322 11 1 4.9505 7.2631 -0.5909 12 7 6.6513 6.6112 -1.6376 13 6 6.4379 6.5634 0.8016 14 6 7.0297 7.9658 0.9570 15 6 7.7625 8.0590 2.2705 16 1 7.8019 7.2037 2.9287 17 6 8.3819 9.2365 2.6322 18 7 9.0210 9.3180 3.7787 19 14 8.3131 10.7161 1.4939 20 1 7.1177 11.5350 1.8182 21 1 9.5382 11.5359 1.6732 22 1 8.2290 10.2533 0.0853 23 6 1.8728 3.5104 -0.0002 24 7 1.3175 2.3135 -0.0006 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 4.0213 0.3674 -0.0100 29 1 5.1287 2.5893 -0.0004 30 1 3.3937 5.6615 0.4526 31 1 7.0775 7.5257 -1.6312 32 1 7.3518 5.8857 -1.6053 33 1 5.7436 6.3694 1.6192 34 1 7.2403 5.8260 0.8234 35 1 7.7239 8.1598 0.1394 36 1 6.2273 8.7032 0.9350 37 1 9.4571 10.1464 4.0331 38 1 1.2459 4.3899 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691620785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:49 Heat of formation + Delta-G solvation = -67.339623 kcal Electronic energy + Delta-G solvation = -20930.887041 eV Core-core repulsion = 17579.496812 eV Total energy + Delta-G solvation = -3351.390229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.05465 -40.89485 -38.89375 -37.19049 -35.90033 -34.81485 -33.36470 -32.07695 -30.89117 -28.59858 -27.93312 -25.74351 -24.71554 -23.75444 -22.18852 -21.22872 -19.52285 -19.19630 -18.70347 -18.44356 -17.77284 -16.98255 -16.38804 -16.18080 -15.98305 -15.85682 -15.50348 -15.23574 -14.82330 -14.80799 -14.56427 -14.43577 -14.22684 -13.71568 -13.51022 -13.07468 -12.75729 -12.68602 -12.43485 -12.13346 -11.84789 -11.67740 -11.58085 -11.39668 -11.10216 -10.85033 -10.76173 -10.44702 -9.67794 -9.00248 -8.28786 -6.34443 -0.00350 0.14426 1.39675 1.42077 1.50393 1.52906 1.84588 2.18627 2.37449 2.71026 3.07218 3.29558 3.55778 3.71182 3.82005 3.97806 4.08141 4.09343 4.18674 4.46201 4.47594 4.58848 4.60544 4.62911 4.72789 4.80749 4.95074 4.97168 5.13698 5.38451 5.48070 5.52624 5.64105 6.03655 6.19994 6.26014 6.35759 6.48447 6.72420 6.74824 7.05846 7.30595 8.88016 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035117 B = 0.003066 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.143094 B = 9130.656408 C = 9376.554089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.288 3.712 4 C -0.173 4.173 5 C -0.058 4.058 6 C 0.059 3.941 7 N -0.653 5.653 8 C 0.527 3.473 9 O -0.548 6.548 10 C 0.085 3.915 11 H 0.129 0.871 12 N -0.831 5.831 13 C -0.120 4.120 14 C -0.007 4.007 15 C -0.534 4.534 16 H 0.026 0.974 17 C 0.000 4.000 18 N -0.954 5.954 19 Si 0.955 3.045 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.236 1.236 23 C 0.122 3.878 24 N -0.529 5.529 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.121 0.879 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.430 0.570 31 H 0.357 0.643 32 H 0.346 0.654 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.026 0.974 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.635 -11.513 -9.786 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.109 3.891 4 C -0.194 4.194 5 C -0.085 4.085 6 C -0.038 4.038 7 N -0.301 5.301 8 C 0.315 3.685 9 O -0.424 6.424 10 C -0.030 4.030 11 H 0.146 0.854 12 N -0.363 5.363 13 C -0.160 4.160 14 C -0.044 4.044 15 C -0.572 4.572 16 H 0.044 0.956 17 C -0.196 4.196 18 N -0.595 5.595 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.219 1.219 22 H -0.158 1.158 23 C -0.037 4.037 24 N -0.253 5.253 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.140 0.860 28 H 0.174 0.826 29 H 0.157 0.843 30 H 0.270 0.730 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -18.582 -12.466 -10.632 24.774 hybrid contribution 1.747 1.195 1.247 2.457 sum -16.835 -11.271 -9.385 22.328 Atomic orbital electron populations 1.23067 0.75794 1.04655 1.02317 1.86233 1.24406 1.24066 1.88052 1.19963 0.89657 0.85095 0.94346 1.21126 0.92078 0.99471 1.06746 1.21494 1.01228 0.90843 0.94935 1.18749 0.93569 0.85994 1.05487 1.43289 1.22686 1.09909 1.54212 1.21039 0.80299 0.90407 0.76793 1.90656 1.65130 1.45935 1.40679 1.21426 0.96593 0.94250 0.90761 0.85358 1.58759 1.23297 1.09462 1.44811 1.22040 0.99293 0.98524 0.96103 1.19510 0.95977 0.93997 0.94940 1.21458 1.33409 0.98059 1.04308 0.95587 1.26107 0.94224 1.02572 0.96721 1.70087 1.36808 1.28362 1.24250 0.85598 0.77736 0.78187 0.80740 1.18971 1.21877 1.15845 1.22634 0.90460 0.94975 0.95594 1.67319 1.40297 0.98587 1.19052 0.92353 0.92473 0.86038 0.82569 0.84284 0.73016 0.82758 0.84096 0.91459 0.93824 0.95565 0.94852 0.92586 0.78798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 113.37 1.18 1.70 16 2 O -0.32 -6.88 10.48 -90.75 -0.95 -7.83 16 3 C 0.29 6.82 7.49 84.80 0.63 7.46 16 4 C -0.17 -4.06 10.03 22.45 0.23 -3.83 16 5 C -0.06 -1.47 8.76 22.56 0.20 -1.27 16 6 C 0.06 1.34 6.31 38.19 0.24 1.58 16 7 N -0.65 -13.65 5.36 -303.11 -1.62 -15.28 16 8 C 0.53 14.30 6.84 87.66 0.60 14.90 16 9 O -0.55 -18.40 13.94 -3.07 -0.04 -18.44 16 10 C 0.08 2.24 3.21 44.17 0.14 2.38 16 11 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 12 N -0.83 -22.83 8.94 -171.81 -1.54 -24.37 16 13 C -0.12 -4.00 4.78 30.59 0.15 -3.85 16 14 C -0.01 -0.27 3.81 29.85 0.11 -0.16 16 15 C -0.53 -29.03 9.66 25.60 0.25 -28.79 16 16 H 0.03 1.59 7.99 -2.91 -0.02 1.57 16 17 C 0.00 0.02 5.47 84.66 0.46 0.48 16 18 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 19 Si 0.95 41.34 27.47 68.60 1.88 43.22 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.24 -9.00 6.54 99.48 0.65 -8.35 16 23 C 0.12 2.37 11.11 84.78 0.94 3.31 16 24 N -0.53 -11.87 9.20 -308.43 -2.84 -14.71 16 25 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 26 H 0.06 0.83 8.10 -2.38 -0.02 0.82 16 27 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.14 3.93 6.47 -2.91 -0.02 3.91 16 30 H 0.43 6.08 8.82 -92.71 -0.82 5.26 16 31 H 0.36 9.29 7.55 -89.69 -0.68 8.61 16 32 H 0.35 10.04 8.58 -89.69 -0.77 9.27 16 33 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.03 1.02 5.93 -2.39 -0.01 1.01 16 36 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 37 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 38 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -71.76 324.07 -0.89 -72.64 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -1.21 Total: 29.12 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 5.13 Total: -6.10 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -5.70 Total: -112.62 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.99 Total: -26.27 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.88 Total: 43.22 kcal Total: -71.76 -0.89 -72.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691620785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.305 kcal (2) G-P(sol) polarization free energy of solvation -71.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds