Wall clock time and date at job start Tue Mar 31 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35943 * 119.61714 * 2 1 4 4 C 1.35885 * 120.60262 * 179.97438 * 3 2 1 5 5 N 1.40384 * 120.08854 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99701 * 236.95255 * 5 4 3 7 7 O 1.21294 * 120.00376 * 5.04394 * 6 5 4 8 8 C 1.50706 * 119.99593 * 185.04490 * 6 5 4 9 9 H 1.09000 * 109.46795 * 319.99660 * 8 6 5 10 10 N 1.46905 * 109.46854 * 199.99980 * 8 6 5 11 11 C 1.52998 * 109.47344 * 80.00027 * 8 6 5 12 12 C 1.52992 * 109.47431 * 184.99857 * 11 8 6 13 13 C 1.50699 * 109.47389 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00035 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00069 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99865 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99992 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46933 * 89.99884 * 17 15 13 19 19 H 1.48495 * 109.47054 * 209.99569 * 17 15 13 20 20 H 1.48497 * 109.47300 * 329.99932 * 17 15 13 21 21 C 1.40634 * 119.82172 * 0.02562 * 4 3 2 22 22 C 1.36348 * 119.24546 * 359.97438 * 21 4 3 23 23 C 1.34637 * 119.60309 * 180.28660 * 2 1 3 24 24 O 1.22093 * 119.92633 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47025 * 89.99508 * 1 2 3 26 26 H 1.08989 * 109.47813 * 209.99823 * 1 2 3 27 27 H 1.08999 * 109.46751 * 330.00525 * 1 2 3 28 28 H 1.08005 * 119.69727 * 359.97438 * 3 2 1 29 29 H 0.96993 * 119.99718 * 56.94783 * 5 4 3 30 30 H 1.00895 * 110.99639 * 299.99722 * 10 8 6 31 31 H 1.00896 * 111.00088 * 63.95705 * 10 8 6 32 32 H 1.09004 * 109.46943 * 305.00378 * 11 8 6 33 33 H 1.08996 * 109.46866 * 64.99476 * 11 8 6 34 34 H 1.08996 * 109.47187 * 300.00279 * 12 11 8 35 35 H 1.09003 * 109.46795 * 59.99762 * 12 11 8 36 36 H 0.97001 * 120.00051 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.37108 * 179.97438 * 21 4 3 38 38 H 1.07999 * 120.30120 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1818 0.0000 4 6 3.4955 1.2052 0.0005 5 7 4.1783 2.4318 0.0000 6 6 5.0625 2.7103 -0.9782 7 8 5.2016 1.9424 -1.9068 8 6 5.8786 3.9758 -0.9183 9 1 5.2539 4.7944 -0.5609 10 7 6.3851 4.2959 -2.2596 11 6 7.0566 3.7783 0.0379 12 6 7.8128 5.0989 0.1953 13 6 8.9727 4.9044 1.1375 14 1 9.1528 3.9357 1.5796 15 6 9.8047 5.9631 1.4345 16 7 10.8171 5.7933 2.2564 17 14 9.4936 7.6386 0.6693 18 1 8.5904 8.4242 1.5482 19 1 10.7829 8.3589 0.5141 20 1 8.8603 7.4647 -0.6625 21 6 4.2157 -0.0027 0.0005 22 6 3.5351 -1.1841 0.0005 23 6 2.1301 -1.1706 -0.0059 24 8 1.5109 -2.2229 -0.0116 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.5856 2.1106 -0.0004 29 1 4.0135 3.0788 0.7036 30 1 6.9675 3.5517 -2.6132 31 1 5.6266 4.4943 -2.8947 32 1 6.6850 3.4542 1.0100 33 1 7.7285 3.0206 -0.3652 34 1 8.1843 5.4229 -0.7768 35 1 7.1407 5.8565 0.5983 36 1 11.4027 6.5379 2.4650 37 1 5.2957 0.0055 0.0005 38 1 4.0710 -2.1218 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691624496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:37 Heat of formation + Delta-G solvation = -37.552561 kcal Electronic energy + Delta-G solvation = -21113.283475 eV Core-core repulsion = 17763.184911 eV Total energy + Delta-G solvation = -3350.098565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67495 -40.07777 -37.34722 -35.76289 -35.27220 -33.68058 -32.81555 -30.57997 -29.61651 -27.95078 -26.72356 -24.36888 -23.82540 -22.52375 -20.66216 -20.04879 -18.39712 -17.85990 -17.23883 -16.95584 -16.70171 -16.26824 -15.87136 -15.48015 -14.87390 -14.49910 -14.28851 -14.12638 -13.63277 -13.56384 -13.37013 -12.92071 -12.69862 -12.55624 -12.49019 -12.05355 -11.73330 -11.12524 -10.93754 -10.57607 -10.49068 -10.25116 -10.00548 -9.85376 -9.71829 -9.64851 -9.16266 -8.62591 -8.50085 -8.04204 -6.03275 -4.01440 0.51416 1.45625 2.19347 2.51039 3.05686 3.32367 3.36700 3.40986 3.47894 4.17776 4.35125 4.47593 4.57603 4.65649 4.74644 4.81141 4.87893 5.04455 5.20021 5.24918 5.32577 5.50200 5.54948 5.69861 5.80244 6.06847 6.20013 6.36986 6.44311 6.71541 6.78984 7.07687 7.26612 7.31445 7.52270 7.55686 7.73269 7.81751 8.03605 8.53306 9.01224 9.59414 11.10164 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.003232 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.961544 B = 8662.236213 C = 8880.128140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.493 5.493 3 C 0.111 3.889 4 C 0.046 3.954 5 N -0.672 5.672 6 C 0.486 3.514 7 O -0.534 6.534 8 C 0.078 3.922 9 H 0.101 0.899 10 N -0.810 5.810 11 C -0.088 4.088 12 C -0.004 4.004 13 C -0.523 4.523 14 H 0.069 0.931 15 C 0.066 3.934 16 N -0.906 5.906 17 Si 0.879 3.121 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.260 1.260 21 C -0.003 4.003 22 C -0.231 4.231 23 C 0.512 3.488 24 O -0.555 6.555 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.412 0.588 30 H 0.351 0.649 31 H 0.336 0.664 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.034 0.966 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.138 0.862 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.929 -6.198 -4.488 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.205 5.205 3 C -0.018 4.018 4 C -0.052 4.052 5 N -0.322 5.322 6 C 0.272 3.728 7 O -0.409 6.409 8 C -0.038 4.038 9 H 0.119 0.881 10 N -0.338 5.338 11 C -0.127 4.127 12 C -0.041 4.041 13 C -0.561 4.561 14 H 0.087 0.913 15 C -0.135 4.135 16 N -0.545 5.545 17 Si 0.707 3.293 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.184 1.184 21 C -0.026 4.026 22 C -0.253 4.253 23 C 0.314 3.686 24 O -0.439 6.439 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.182 0.818 29 H 0.249 0.751 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.156 0.844 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.699 -6.687 -4.755 22.266 hybrid contribution -0.615 0.480 -0.191 0.803 sum -21.313 -6.207 -4.946 22.743 Atomic orbital electron populations 1.22159 0.76882 1.05000 1.03976 1.45211 1.09199 1.06293 1.59800 1.21749 0.92593 0.89963 0.97526 1.16762 0.89466 0.87179 1.11781 1.43542 1.42815 1.16715 1.29156 1.22982 0.78956 0.90082 0.80747 1.90701 1.66221 1.50538 1.33442 1.21897 0.96573 0.91644 0.93659 0.88104 1.59024 1.24162 1.47927 1.02689 1.21498 0.93751 1.01829 0.95585 1.19483 0.95172 0.91643 0.97845 1.21169 1.10383 0.98147 1.26412 0.91289 1.25020 0.94777 0.99019 0.94686 1.69920 1.16825 1.32025 1.35702 0.86772 0.77540 0.84202 0.80811 1.20512 1.21607 1.18399 1.21567 1.01416 0.90922 0.88694 1.22030 0.92505 0.99818 1.10993 1.17159 0.89336 0.82676 0.79428 1.90962 1.69889 1.29538 1.53462 0.90563 0.88658 0.89613 0.81808 0.75061 0.83448 0.85190 0.91994 0.92085 0.94754 0.97301 0.92793 0.84371 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.36 59.85 0.62 0.99 16 2 N -0.49 -4.57 2.99 -127.00 -0.38 -4.95 16 3 C 0.11 0.87 10.20 -16.57 -0.17 0.70 16 4 C 0.05 0.46 5.71 -83.88 -0.48 -0.02 16 5 N -0.67 -6.52 5.29 -10.01 -0.05 -6.57 16 6 C 0.49 6.22 6.87 -10.98 -0.08 6.15 16 7 O -0.53 -8.48 15.63 5.55 0.09 -8.39 16 8 C 0.08 1.06 3.15 -68.86 -0.22 0.85 16 9 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 10 N -0.81 -11.36 8.44 -5.65 -0.05 -11.41 16 11 C -0.09 -1.54 4.78 -26.74 -0.13 -1.67 16 12 C 0.00 -0.09 3.93 -27.89 -0.11 -0.20 16 13 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 14 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.91 -27.61 13.96 55.43 0.77 -26.84 16 17 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 21 C 0.00 -0.04 9.03 -39.36 -0.36 -0.39 16 22 C -0.23 -2.72 9.98 -39.41 -0.39 -3.12 16 23 C 0.51 6.49 7.40 -15.47 -0.11 6.38 16 24 O -0.56 -8.77 16.64 4.83 0.08 -8.69 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.67 7.39 -51.93 -0.38 0.29 16 27 H 0.09 0.24 8.01 -51.93 -0.42 -0.17 16 28 H 0.16 0.69 8.04 -52.48 -0.42 0.27 16 29 H 0.41 2.88 8.83 -40.82 -0.36 2.52 16 30 H 0.35 5.11 8.58 -39.29 -0.34 4.77 16 31 H 0.34 3.98 9.06 -39.29 -0.36 3.62 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.80 6.81 -51.93 -0.35 0.44 16 35 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -36.01 326.99 -6.28 -42.29 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.14 Total: 6.29 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.85 Total: -3.27 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.29 Total: -49.77 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.17 Total: -17.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.01 -6.28 -42.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691624496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.739 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds