Wall clock time and date at job start Tue Mar 31 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35943 * 119.61714 * 2 1 4 4 C 1.35885 * 120.60262 * 179.97438 * 3 2 1 5 5 N 1.40384 * 120.08854 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99701 * 236.95255 * 5 4 3 7 7 O 1.21294 * 120.00376 * 5.04394 * 6 5 4 8 8 C 1.50706 * 119.99593 * 185.04490 * 6 5 4 9 9 H 1.09000 * 109.46795 * 319.99660 * 8 6 5 10 10 N 1.46905 * 109.46854 * 199.99980 * 8 6 5 11 11 C 1.52998 * 109.47344 * 80.00027 * 8 6 5 12 12 C 1.52992 * 109.47431 * 184.99857 * 11 8 6 13 13 C 1.50699 * 109.47389 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00035 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00069 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99865 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99992 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46933 * 89.99884 * 17 15 13 19 19 H 1.48495 * 109.47054 * 209.99569 * 17 15 13 20 20 H 1.48497 * 109.47300 * 329.99932 * 17 15 13 21 21 C 1.40634 * 119.82172 * 0.02562 * 4 3 2 22 22 C 1.36348 * 119.24546 * 359.97438 * 21 4 3 23 23 C 1.34637 * 119.60309 * 180.28660 * 2 1 3 24 24 O 1.22093 * 119.92633 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47025 * 89.99508 * 1 2 3 26 26 H 1.08989 * 109.47813 * 209.99823 * 1 2 3 27 27 H 1.08999 * 109.46751 * 330.00525 * 1 2 3 28 28 H 1.08005 * 119.69727 * 359.97438 * 3 2 1 29 29 H 0.96993 * 119.99718 * 56.94783 * 5 4 3 30 30 H 1.00895 * 110.99639 * 299.99722 * 10 8 6 31 31 H 1.00896 * 111.00088 * 63.95705 * 10 8 6 32 32 H 1.09004 * 109.46943 * 305.00378 * 11 8 6 33 33 H 1.08996 * 109.46866 * 64.99476 * 11 8 6 34 34 H 1.08996 * 109.47187 * 300.00279 * 12 11 8 35 35 H 1.09003 * 109.46795 * 59.99762 * 12 11 8 36 36 H 0.97001 * 120.00051 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.37108 * 179.97438 * 21 4 3 38 38 H 1.07999 * 120.30120 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1368 1.1818 0.0000 4 6 3.4955 1.2052 0.0005 5 7 4.1783 2.4318 0.0000 6 6 5.0625 2.7103 -0.9782 7 8 5.2016 1.9424 -1.9068 8 6 5.8786 3.9758 -0.9183 9 1 5.2539 4.7944 -0.5609 10 7 6.3851 4.2959 -2.2596 11 6 7.0566 3.7783 0.0379 12 6 7.8128 5.0989 0.1953 13 6 8.9727 4.9044 1.1375 14 1 9.1528 3.9357 1.5796 15 6 9.8047 5.9631 1.4345 16 7 10.8171 5.7933 2.2564 17 14 9.4936 7.6386 0.6693 18 1 8.5904 8.4242 1.5482 19 1 10.7829 8.3589 0.5141 20 1 8.8603 7.4647 -0.6625 21 6 4.2157 -0.0027 0.0005 22 6 3.5351 -1.1841 0.0005 23 6 2.1301 -1.1706 -0.0059 24 8 1.5109 -2.2229 -0.0116 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.5856 2.1106 -0.0004 29 1 4.0135 3.0788 0.7036 30 1 6.9675 3.5517 -2.6132 31 1 5.6266 4.4943 -2.8947 32 1 6.6850 3.4542 1.0100 33 1 7.7285 3.0206 -0.3652 34 1 8.1843 5.4229 -0.7768 35 1 7.1407 5.8565 0.5983 36 1 11.4027 6.5379 2.4650 37 1 5.2957 0.0055 0.0005 38 1 4.0710 -2.1218 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691624496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:37 Heat of formation + Delta-G solvation = -66.235451 kcal Electronic energy + Delta-G solvation = -21114.527259 eV Core-core repulsion = 17763.184911 eV Total energy + Delta-G solvation = -3351.342348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51704 -41.07612 -38.31464 -36.89136 -36.33329 -34.77562 -34.51267 -32.24732 -30.46439 -28.71874 -28.09836 -25.58856 -24.77874 -23.57565 -22.10282 -21.22875 -19.33014 -18.85904 -18.58667 -18.11479 -17.86236 -17.07077 -16.95288 -16.41475 -16.22551 -15.88915 -15.30542 -15.19359 -14.97529 -14.67019 -14.27735 -14.23712 -14.00229 -13.55722 -13.43309 -13.28722 -12.85260 -12.76154 -12.51281 -11.99010 -11.71215 -11.54918 -11.28947 -11.25537 -11.22064 -11.11910 -10.67942 -10.61257 -9.68004 -8.88348 -8.21759 -6.25015 -0.27259 0.55714 1.43003 1.43775 1.47331 1.52980 1.60675 2.20817 2.44893 2.50974 3.15409 3.50748 3.62894 3.68333 3.81282 3.86169 4.12089 4.13019 4.32046 4.35806 4.41824 4.65671 4.76619 4.77183 4.88480 4.91098 5.01082 5.19704 5.26674 5.55536 5.59796 5.70531 5.79033 5.89598 6.10523 6.36108 6.39949 6.56116 6.83378 6.84934 7.13709 7.39842 8.95232 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.003232 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.961544 B = 8662.236213 C = 8880.128140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.487 5.487 3 C 0.146 3.854 4 C 0.017 3.983 5 N -0.651 5.651 6 C 0.492 3.508 7 O -0.567 6.567 8 C 0.089 3.911 9 H 0.132 0.868 10 N -0.820 5.820 11 C -0.081 4.081 12 C 0.002 3.998 13 C -0.531 4.531 14 H 0.027 0.973 15 C 0.000 4.000 16 N -0.958 5.958 17 Si 0.953 3.047 18 H -0.263 1.263 19 H -0.294 1.294 20 H -0.241 1.241 21 C -0.001 4.001 22 C -0.256 4.256 23 C 0.500 3.500 24 O -0.599 6.599 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.217 0.783 29 H 0.429 0.571 30 H 0.345 0.655 31 H 0.350 0.650 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.026 0.974 36 H 0.264 0.736 37 H 0.127 0.873 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.943 -3.522 -5.192 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.196 5.196 3 C 0.016 3.984 4 C -0.080 4.080 5 N -0.302 5.302 6 C 0.278 3.722 7 O -0.445 6.445 8 C -0.027 4.027 9 H 0.149 0.851 10 N -0.349 5.349 11 C -0.120 4.120 12 C -0.036 4.036 13 C -0.569 4.569 14 H 0.046 0.954 15 C -0.196 4.196 16 N -0.599 5.599 17 Si 0.776 3.224 18 H -0.188 1.188 19 H -0.220 1.220 20 H -0.165 1.165 21 C -0.025 4.025 22 C -0.278 4.278 23 C 0.304 3.696 24 O -0.486 6.486 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.148 0.852 28 H 0.233 0.767 29 H 0.269 0.731 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.772 -3.990 -5.437 24.710 hybrid contribution 0.314 -0.396 0.081 0.512 sum -23.458 -4.386 -5.356 24.458 Atomic orbital electron populations 1.22485 0.74490 1.06486 1.05171 1.45353 1.10781 1.05824 1.57685 1.22371 0.91996 0.90870 0.93154 1.16817 0.90514 0.86559 1.14132 1.43248 1.41716 1.16691 1.28550 1.22700 0.79300 0.89299 0.80893 1.90702 1.67423 1.51308 1.35077 1.21701 0.95229 0.93131 0.92621 0.85071 1.59021 1.24937 1.47751 1.03225 1.21283 0.94695 0.98722 0.97266 1.19378 0.93884 0.94474 0.95858 1.21611 1.12168 0.96369 1.26727 0.95444 1.26049 0.94460 1.03836 0.95277 1.70092 1.18426 1.33507 1.37911 0.85612 0.77544 0.78482 0.80721 1.18806 1.22017 1.16457 1.21589 1.01075 0.91709 0.88096 1.21977 0.92653 1.00069 1.13092 1.17266 0.89543 0.83238 0.79523 1.90929 1.70606 1.31181 1.55927 0.89503 0.90155 0.85223 0.76689 0.73104 0.84116 0.83604 0.91131 0.94308 0.95311 0.95531 0.92765 0.85477 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.47 10.36 127.77 1.32 1.79 16 2 N -0.49 -7.77 2.99 -673.86 -2.01 -9.78 16 3 C 0.15 1.68 10.20 83.51 0.85 2.54 16 4 C 0.02 0.30 5.71 37.81 0.22 0.51 16 5 N -0.65 -10.46 5.29 -303.96 -1.61 -12.07 16 6 C 0.49 11.38 6.87 87.66 0.60 11.98 16 7 O -0.57 -17.24 15.63 -3.07 -0.05 -17.29 16 8 C 0.09 2.16 3.15 44.17 0.14 2.29 16 9 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 10 N -0.82 -21.06 8.44 -171.79 -1.45 -22.51 16 11 C -0.08 -2.73 4.78 30.59 0.15 -2.58 16 12 C 0.00 0.07 3.93 29.85 0.12 0.18 16 13 C -0.53 -29.54 9.66 25.60 0.25 -29.29 16 14 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 15 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 16 N -0.96 -59.81 13.96 21.45 0.30 -59.52 16 17 Si 0.95 43.14 27.47 68.60 1.88 45.03 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 21 C 0.00 -0.03 9.03 22.41 0.20 0.17 16 22 C -0.26 -6.22 9.98 22.38 0.22 -6.00 16 23 C 0.50 12.63 7.40 84.82 0.63 13.25 16 24 O -0.60 -19.48 16.64 -5.62 -0.09 -19.57 16 25 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.08 1.01 7.39 -2.39 -0.02 1.00 16 27 H 0.13 0.02 8.01 -2.39 -0.02 0.00 16 28 H 0.22 0.29 8.04 -2.91 -0.02 0.27 16 29 H 0.43 4.09 8.83 -92.71 -0.82 3.27 16 30 H 0.35 9.66 8.58 -89.70 -0.77 8.89 16 31 H 0.35 7.27 9.06 -89.70 -0.81 6.46 16 32 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.03 1.27 6.81 -2.39 -0.02 1.25 16 35 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 38 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -82.16 326.99 0.78 -81.38 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -1.35 Total: 19.04 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.16 Total: -4.71 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -4.77 Total: -103.88 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.14 Total: -36.86 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.03 kcal Total: -82.16 0.78 -81.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691624496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.147 kcal (2) G-P(sol) polarization free energy of solvation -82.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds