Wall clock time and date at job start Tue Mar 31 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 113.99936 * 2 1 4 4 C 1.50698 * 110.43692 * 57.65209 * 3 2 1 5 5 O 1.21309 * 119.99829 * 213.83059 * 4 3 2 6 6 N 1.34769 * 120.00419 * 33.82913 * 4 3 2 7 7 C 1.40592 * 120.00357 * 174.90497 * 6 4 3 8 8 C 1.40644 * 126.08351 * 0.02562 * 7 6 4 9 9 N 1.30904 * 108.38985 * 179.97438 * 8 7 6 10 10 N 1.40074 * 108.40358 * 0.02562 * 9 8 7 11 11 C 1.37321 * 126.06545 * 180.02562 * 10 9 8 12 12 H 1.08007 * 120.00148 * 185.24655 * 11 10 9 13 13 C 1.38990 * 120.00591 * 5.24966 * 11 10 9 14 14 N 1.31293 * 119.99543 * 5.28184 * 13 11 10 15 15 Si 1.86792 * 120.00239 * 185.28767 * 13 11 10 16 16 H 1.48502 * 109.47179 * 94.99691 * 15 13 11 17 17 H 1.48502 * 109.47118 * 214.99123 * 15 13 11 18 18 H 1.48497 * 109.47417 * 334.99207 * 15 13 11 19 19 C 1.35680 * 126.07846 * 179.71831 * 7 6 4 20 20 C 1.54897 * 110.48664 * 180.33856 * 3 2 1 21 21 C 1.54888 * 102.74813 * 80.73356 * 20 3 2 22 22 C 1.54266 * 104.19885 * 37.94332 * 21 20 3 23 23 C 1.53879 * 106.59712 * 336.39049 * 22 21 20 24 24 H 1.08998 * 109.47263 * 185.18339 * 1 2 3 25 25 H 1.08997 * 109.47499 * 305.18507 * 1 2 3 26 26 H 1.09002 * 109.46883 * 65.18594 * 1 2 3 27 27 H 0.97008 * 119.99214 * 354.90960 * 6 4 3 28 28 H 1.08002 * 125.80679 * 359.97012 * 8 7 6 29 29 H 0.97001 * 120.00562 * 180.02562 * 14 13 11 30 30 H 1.08000 * 126.25032 * 359.97438 * 19 7 6 31 31 H 1.08997 * 110.75329 * 322.41811 * 20 3 2 32 32 H 1.08995 * 110.75463 * 199.04940 * 20 3 2 33 33 H 1.09003 * 110.48580 * 279.26699 * 21 20 3 34 34 H 1.08997 * 110.48641 * 156.62488 * 21 20 3 35 35 H 1.08994 * 110.02989 * 95.67358 * 22 21 20 36 36 H 1.08999 * 110.03269 * 217.10682 * 22 21 20 37 37 H 1.08991 * 110.02978 * 119.28511 * 23 22 21 38 38 H 1.09003 * 110.02752 * 240.71426 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5340 2.0934 1.1930 5 8 1.3724 3.2923 1.1027 6 7 1.2875 1.4663 2.3601 7 6 0.9470 2.2134 3.5014 8 6 0.8269 3.6130 3.5698 9 7 0.4961 3.9398 4.7935 10 7 0.3928 2.7668 5.5519 11 6 0.0643 2.6911 6.8831 12 1 0.0951 1.7398 7.3938 13 6 -0.3079 3.8385 7.5735 14 7 -0.4461 4.9752 6.9312 15 14 -0.6114 3.7634 9.4151 16 1 0.6249 4.1578 10.1370 17 1 -1.7121 4.6936 9.7737 18 1 -0.9884 2.3792 9.7987 19 6 0.6700 1.7119 4.7313 20 6 3.5562 1.2105 -0.0086 21 6 3.8744 0.9503 -1.5019 22 6 2.8548 1.8223 -2.2635 23 6 1.6695 2.0481 -1.3086 24 1 -0.3634 -1.0234 0.0928 25 1 -0.3634 0.5921 0.8399 26 1 -0.3633 0.4313 -0.9328 27 1 1.3451 0.4994 2.4127 28 1 0.9815 4.3012 2.7519 29 1 -0.7056 5.7762 7.4130 30 1 0.6707 0.6686 5.0106 31 1 3.8956 0.3791 0.6092 32 1 4.0026 2.1476 0.3239 33 1 3.7321 -0.1028 -1.7444 34 1 4.8925 1.2622 -1.7350 35 1 3.3065 2.7777 -2.5305 36 1 2.5176 1.3043 -3.1613 37 1 1.5460 3.1130 -1.1122 38 1 0.7571 1.6397 -1.7430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754650352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:11 Heat of formation + Delta-G solvation = 0.014233 kcal Electronic energy + Delta-G solvation = -22051.377540 eV Core-core repulsion = 18702.907993 eV Total energy + Delta-G solvation = -3348.469546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.57317 -39.37854 -37.50262 -35.84566 -34.13813 -33.09927 -30.27609 -29.27089 -28.67807 -27.58776 -26.31371 -24.86768 -22.30143 -20.90633 -20.65154 -19.47869 -19.35477 -17.95311 -17.13279 -16.28273 -15.48975 -15.32462 -15.09821 -14.98954 -14.58044 -14.52003 -13.80071 -13.69356 -13.13293 -13.01332 -12.93625 -12.26158 -11.98176 -11.66986 -11.52814 -11.40429 -11.31227 -11.25771 -11.19026 -11.04281 -10.90004 -10.53249 -10.47823 -10.17996 -9.98469 -9.16509 -8.94749 -8.79839 -8.05843 -6.70031 -6.57115 -4.23005 2.73984 3.00704 3.04984 3.10296 3.42202 3.65414 3.71722 3.88251 4.37252 4.44584 4.59600 4.70099 4.93208 5.01705 5.21479 5.23118 5.30874 5.38251 5.42633 5.53669 5.60861 5.68966 5.74811 5.82940 5.96605 6.04373 6.16224 6.24414 6.27107 6.44779 6.85189 6.94265 7.00921 7.17092 7.24442 7.85965 8.17670 8.28622 8.61684 8.83593 9.37635 9.66242 10.39761 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.042501 B = 0.003759 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.656306 B = 7446.971655 C = 7642.653686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.369 6.369 3 C 0.100 3.900 4 C 0.482 3.518 5 O -0.531 6.531 6 N -0.616 5.616 7 C -0.063 4.063 8 C -0.032 4.032 9 N -0.262 5.262 10 N -0.142 5.142 11 C -0.325 4.325 12 H 0.116 0.884 13 C 0.048 3.952 14 N -0.771 5.771 15 Si 0.935 3.065 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.082 4.082 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.142 4.142 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.401 0.599 28 H 0.175 0.825 29 H 0.275 0.725 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -9.570 -12.503 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.287 6.287 3 C 0.057 3.943 4 C 0.267 3.733 5 O -0.408 6.408 6 N -0.258 5.258 7 C -0.168 4.168 8 C -0.207 4.207 9 N -0.093 5.093 10 N 0.091 4.909 11 C -0.457 4.457 12 H 0.134 0.866 13 C -0.170 4.170 14 N -0.398 5.398 15 Si 0.759 3.241 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.233 4.233 20 C -0.141 4.141 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.180 4.180 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.235 0.765 28 H 0.192 0.808 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.979 -7.672 -11.720 14.562 hybrid contribution -0.236 -1.108 0.320 1.178 sum 3.744 -8.780 -11.400 14.868 Atomic orbital electron populations 1.22956 0.80847 1.03098 1.01126 1.87918 1.19956 1.26022 1.94846 1.22614 0.95651 0.83032 0.92974 1.20788 0.79600 0.88559 0.84368 1.90590 1.52029 1.14772 1.83437 1.42605 1.65981 1.09463 1.07769 1.17324 1.21163 0.91700 0.86624 1.24061 1.06910 0.93017 0.96761 1.78209 1.24518 1.05085 1.01508 1.44535 1.36940 1.02502 1.06955 1.19881 1.47358 0.97088 0.81384 0.86609 1.25631 0.95476 0.94722 1.01122 1.70197 1.33693 0.99558 1.36316 0.85811 0.78611 0.79062 0.80659 1.19614 1.20111 1.18784 1.21281 1.17809 0.93548 0.90625 1.22480 0.90351 1.03307 0.97944 1.22329 0.98891 1.00368 0.94049 1.22067 0.95553 0.99970 0.98027 1.22671 0.98983 1.02750 0.93635 0.89145 0.92909 0.93590 0.76526 0.80849 0.91446 0.83696 0.89960 0.89380 0.91030 0.91331 0.91548 0.91788 0.88696 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.22 101.05 1.03 1.22 16 2 O -0.37 -4.71 9.76 -35.23 -0.34 -5.06 16 3 C 0.10 1.38 0.82 -90.11 -0.07 1.31 16 4 C 0.48 8.69 5.58 -10.99 -0.06 8.63 16 5 O -0.53 -11.42 12.76 5.53 0.07 -11.35 16 6 N -0.62 -11.43 4.56 -10.00 -0.05 -11.48 16 7 C -0.06 -1.47 6.90 -83.84 -0.58 -2.05 16 8 C -0.03 -0.85 10.85 -17.04 -0.18 -1.03 16 9 N -0.26 -7.69 10.45 30.80 0.32 -7.37 16 10 N -0.14 -3.92 3.73 -11.41 -0.04 -3.97 16 11 C -0.32 -8.66 10.24 -14.81 -0.15 -8.81 16 12 H 0.12 2.76 7.84 -52.48 -0.41 2.35 16 13 C 0.05 1.24 5.49 -17.50 -0.10 1.14 16 14 N -0.77 -21.67 11.87 55.50 0.66 -21.01 16 15 Si 0.93 19.00 29.55 -169.99 -5.02 13.98 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 C -0.08 -1.95 11.49 -16.39 -0.19 -2.14 16 20 C -0.10 -1.24 6.04 -24.73 -0.15 -1.39 16 21 C -0.12 -1.16 6.81 -25.07 -0.17 -1.33 16 22 C -0.12 -1.19 6.80 -25.61 -0.17 -1.37 16 23 C -0.14 -1.79 5.89 -25.61 -0.15 -1.94 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 26 H 0.05 0.49 6.46 -51.93 -0.34 0.15 16 27 H 0.40 6.26 8.01 -40.82 -0.33 5.93 16 28 H 0.17 4.58 5.94 -52.49 -0.31 4.27 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.15 2.91 8.06 -52.49 -0.42 2.48 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.37 6.79 -51.93 -0.35 1.02 16 38 H 0.07 0.84 6.17 -51.93 -0.32 0.52 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -32.48 311.94 -5.55 -38.03 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.90 Total: 11.27 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.95 Total: -7.76 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.89 Total: -43.82 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.27 Total: -16.41 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.48 -5.55 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754650352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.047 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds