Wall clock time and date at job start Tue Mar 31 2020 01:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 113.99936 * 2 1 4 4 C 1.50698 * 110.43692 * 57.65209 * 3 2 1 5 5 O 1.21309 * 119.99829 * 213.83059 * 4 3 2 6 6 N 1.34769 * 120.00419 * 33.82913 * 4 3 2 7 7 C 1.40592 * 120.00357 * 174.90497 * 6 4 3 8 8 C 1.40644 * 126.08351 * 0.02562 * 7 6 4 9 9 N 1.30904 * 108.38985 * 179.97438 * 8 7 6 10 10 N 1.40074 * 108.40358 * 0.02562 * 9 8 7 11 11 C 1.37321 * 126.06545 * 180.02562 * 10 9 8 12 12 H 1.08007 * 120.00148 * 185.24655 * 11 10 9 13 13 C 1.38990 * 120.00591 * 5.24966 * 11 10 9 14 14 N 1.31293 * 119.99543 * 5.28184 * 13 11 10 15 15 Si 1.86792 * 120.00239 * 185.28767 * 13 11 10 16 16 H 1.48502 * 109.47179 * 94.99691 * 15 13 11 17 17 H 1.48502 * 109.47118 * 214.99123 * 15 13 11 18 18 H 1.48497 * 109.47417 * 334.99207 * 15 13 11 19 19 C 1.35680 * 126.07846 * 179.71831 * 7 6 4 20 20 C 1.54897 * 110.48664 * 180.33856 * 3 2 1 21 21 C 1.54888 * 102.74813 * 80.73356 * 20 3 2 22 22 C 1.54266 * 104.19885 * 37.94332 * 21 20 3 23 23 C 1.53879 * 106.59712 * 336.39049 * 22 21 20 24 24 H 1.08998 * 109.47263 * 185.18339 * 1 2 3 25 25 H 1.08997 * 109.47499 * 305.18507 * 1 2 3 26 26 H 1.09002 * 109.46883 * 65.18594 * 1 2 3 27 27 H 0.97008 * 119.99214 * 354.90960 * 6 4 3 28 28 H 1.08002 * 125.80679 * 359.97012 * 8 7 6 29 29 H 0.97001 * 120.00562 * 180.02562 * 14 13 11 30 30 H 1.08000 * 126.25032 * 359.97438 * 19 7 6 31 31 H 1.08997 * 110.75329 * 322.41811 * 20 3 2 32 32 H 1.08995 * 110.75463 * 199.04940 * 20 3 2 33 33 H 1.09003 * 110.48580 * 279.26699 * 21 20 3 34 34 H 1.08997 * 110.48641 * 156.62488 * 21 20 3 35 35 H 1.08994 * 110.02989 * 95.67358 * 22 21 20 36 36 H 1.08999 * 110.03269 * 217.10682 * 22 21 20 37 37 H 1.08991 * 110.02978 * 119.28511 * 23 22 21 38 38 H 1.09003 * 110.02752 * 240.71426 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5340 2.0934 1.1930 5 8 1.3724 3.2923 1.1027 6 7 1.2875 1.4663 2.3601 7 6 0.9470 2.2134 3.5014 8 6 0.8269 3.6130 3.5698 9 7 0.4961 3.9398 4.7935 10 7 0.3928 2.7668 5.5519 11 6 0.0643 2.6911 6.8831 12 1 0.0951 1.7398 7.3938 13 6 -0.3079 3.8385 7.5735 14 7 -0.4461 4.9752 6.9312 15 14 -0.6114 3.7634 9.4151 16 1 0.6249 4.1578 10.1370 17 1 -1.7121 4.6936 9.7737 18 1 -0.9884 2.3792 9.7987 19 6 0.6700 1.7119 4.7313 20 6 3.5562 1.2105 -0.0086 21 6 3.8744 0.9503 -1.5019 22 6 2.8548 1.8223 -2.2635 23 6 1.6695 2.0481 -1.3086 24 1 -0.3634 -1.0234 0.0928 25 1 -0.3634 0.5921 0.8399 26 1 -0.3633 0.4313 -0.9328 27 1 1.3451 0.4994 2.4127 28 1 0.9815 4.3012 2.7519 29 1 -0.7056 5.7762 7.4130 30 1 0.6707 0.6686 5.0106 31 1 3.8956 0.3791 0.6092 32 1 4.0026 2.1476 0.3239 33 1 3.7321 -0.1028 -1.7444 34 1 4.8925 1.2622 -1.7350 35 1 3.3065 2.7777 -2.5305 36 1 2.5176 1.3043 -3.1613 37 1 1.5460 3.1130 -1.1122 38 1 0.7571 1.6397 -1.7430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754650352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:10 Heat of formation + Delta-G solvation = -22.379301 kcal Electronic energy + Delta-G solvation = -22052.348596 eV Core-core repulsion = 18702.907993 eV Total energy + Delta-G solvation = -3349.440603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.03678 -41.10835 -38.89558 -36.84493 -35.85389 -34.92499 -32.28723 -30.44913 -29.77629 -29.17600 -27.35567 -26.72308 -23.71546 -22.79652 -21.59385 -21.26858 -20.65175 -19.54377 -18.71657 -17.54369 -17.35953 -16.67657 -16.35908 -16.14408 -16.03852 -15.67027 -15.37205 -15.22582 -14.87685 -14.72247 -13.97662 -13.55084 -13.37712 -13.23385 -12.97545 -12.92496 -12.85835 -12.44746 -12.17944 -12.14237 -12.06760 -11.98833 -11.84902 -11.29421 -11.14040 -11.03341 -10.87120 -10.32365 -10.12659 -8.57625 -8.50026 -6.26658 1.13379 1.39312 1.43669 1.57711 1.81575 1.98149 2.21645 2.45202 2.61802 2.85496 3.06898 3.46361 3.58238 3.78739 4.17132 4.31872 4.37811 4.40526 4.46296 4.51301 4.53028 4.57126 4.77970 4.80902 4.84646 4.97816 5.02713 5.03195 5.08826 5.21621 5.24253 5.26275 5.42276 5.47748 5.90829 5.96593 6.28128 6.67471 6.70446 7.27853 7.43280 7.63896 8.50226 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.042501 B = 0.003759 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.656306 B = 7446.971655 C = 7642.653686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.363 6.363 3 C 0.108 3.892 4 C 0.480 3.520 5 O -0.569 6.569 6 N -0.609 5.609 7 C -0.048 4.048 8 C -0.057 4.057 9 N -0.311 5.311 10 N -0.165 5.165 11 C -0.356 4.356 12 H 0.141 0.859 13 C -0.005 4.005 14 N -0.825 5.825 15 Si 1.020 2.980 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.242 1.242 19 C -0.079 4.079 20 C -0.107 4.107 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.144 4.144 24 H 0.119 0.881 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.418 0.582 28 H 0.166 0.834 29 H 0.277 0.723 30 H 0.187 0.813 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -12.430 -12.878 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.281 6.281 3 C 0.065 3.935 4 C 0.267 3.733 5 O -0.448 6.448 6 N -0.254 5.254 7 C -0.155 4.155 8 C -0.232 4.232 9 N -0.143 5.143 10 N 0.066 4.934 11 C -0.487 4.487 12 H 0.159 0.841 13 C -0.216 4.216 14 N -0.453 5.453 15 Si 0.839 3.161 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.164 1.164 19 C -0.230 4.230 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.182 4.182 24 H 0.137 0.863 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.255 0.745 28 H 0.183 0.817 29 H 0.087 0.913 30 H 0.204 0.796 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.546 -10.589 -12.137 16.736 hybrid contribution -0.409 -0.266 0.297 0.571 sum 4.137 -10.855 -11.841 16.588 Atomic orbital electron populations 1.23109 0.80102 1.04584 1.00605 1.87937 1.20671 1.24867 1.94652 1.22603 0.96837 0.83085 0.90995 1.21783 0.77887 0.88482 0.85106 1.90577 1.53183 1.16891 1.84152 1.42587 1.66068 1.10043 1.06670 1.17400 1.19116 0.90808 0.88126 1.24090 1.08184 0.94772 0.96192 1.78104 1.26279 1.07181 1.02732 1.44829 1.38050 1.02768 1.07736 1.20649 1.47889 0.98656 0.81517 0.84134 1.26888 0.94274 0.93795 1.06669 1.70373 1.35464 1.00668 1.38829 0.84563 0.78316 0.80029 0.73200 1.19245 1.20048 1.16449 1.21985 1.16096 0.94742 0.90159 1.22559 0.88588 1.03106 1.00184 1.22324 0.99733 1.00966 0.91740 1.22084 0.94484 1.00685 0.98018 1.22694 1.00864 1.00975 0.93695 0.86273 0.95353 0.92597 0.74531 0.81722 0.91309 0.79642 0.88999 0.90687 0.89888 0.89509 0.91158 0.89825 0.91281 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 10.22 113.37 1.16 1.41 16 2 O -0.36 -8.35 9.76 -148.98 -1.45 -9.80 16 3 C 0.11 2.83 0.82 -10.46 -0.01 2.82 16 4 C 0.48 17.39 5.58 87.66 0.49 17.88 16 5 O -0.57 -25.41 12.76 -3.12 -0.04 -25.45 16 6 N -0.61 -22.33 4.56 -303.94 -1.38 -23.72 16 7 C -0.05 -2.29 6.90 37.73 0.26 -2.03 16 8 C -0.06 -3.19 10.85 85.42 0.93 -2.27 16 9 N -0.31 -19.06 10.45 -56.47 -0.59 -19.65 16 10 N -0.16 -9.29 3.73 -190.01 -0.71 -10.00 16 11 C -0.36 -19.03 10.24 84.01 0.86 -18.17 16 12 H 0.14 6.50 7.84 -2.91 -0.02 6.48 16 13 C 0.00 -0.24 5.49 84.95 0.47 0.23 16 14 N -0.83 -48.04 11.87 21.66 0.26 -47.78 16 15 Si 1.02 38.74 29.55 68.60 2.03 40.77 16 16 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 17 H -0.28 -10.30 7.11 99.48 0.71 -9.60 16 18 H -0.24 -8.22 7.11 99.48 0.71 -7.51 16 19 C -0.08 -3.76 11.49 83.38 0.96 -2.80 16 20 C -0.11 -2.36 6.04 31.89 0.19 -2.17 16 21 C -0.11 -1.79 6.81 31.67 0.22 -1.58 16 22 C -0.12 -2.02 6.80 31.32 0.21 -1.81 16 23 C -0.14 -3.46 5.89 31.32 0.18 -3.27 16 24 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.03 0.73 6.33 -2.39 -0.02 0.72 16 26 H 0.06 1.06 6.46 -2.39 -0.02 1.04 16 27 H 0.42 12.34 8.01 -92.70 -0.74 11.60 16 28 H 0.17 9.29 5.94 -2.91 -0.02 9.28 16 29 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.19 6.98 8.06 -2.91 -0.02 6.96 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.85 8.05 -2.39 -0.02 1.84 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 2.03 6.79 -2.39 -0.02 2.02 16 38 H 0.08 1.76 6.17 -2.39 -0.01 1.75 16 Total: -1.00 -74.16 311.94 4.37 -69.79 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.35 Total: 37.61 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.92 Total: -11.76 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -2.43 Total: -101.15 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.49 Total: -35.25 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -74.16 4.37 -69.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754650352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.408 kcal (2) G-P(sol) polarization free energy of solvation -74.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds