Wall clock time and date at job start Tue Mar 31 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46997 * 2 1 4 4 C 1.46496 * 120.00200 * 274.58968 * 3 2 1 5 5 C 1.50705 * 109.47036 * 263.91892 * 4 3 2 6 6 H 1.07998 * 119.99900 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99490 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99563 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47205 * 89.99738 * 9 7 5 11 11 H 1.48497 * 109.47146 * 209.99842 * 9 7 5 12 12 H 1.48501 * 109.47456 * 329.99709 * 9 7 5 13 13 C 1.34782 * 119.99946 * 94.58834 * 3 2 1 14 14 O 1.21283 * 119.99760 * 4.92162 * 13 3 2 15 15 C 1.50700 * 119.99860 * 184.92104 * 13 3 2 16 16 H 1.09001 * 109.46816 * 15.66843 * 15 13 3 17 17 F 1.39906 * 109.47057 * 255.66871 * 15 13 3 18 18 C 1.52997 * 109.47302 * 135.66780 * 15 13 3 19 19 C 1.50698 * 109.47501 * 184.99954 * 18 15 13 20 20 C 1.38233 * 119.99719 * 269.73273 * 19 18 15 21 21 C 1.38238 * 119.99841 * 179.76811 * 20 19 18 22 22 C 1.38237 * 119.99817 * 0.49462 * 21 20 19 23 23 C 1.38234 * 119.99701 * 359.75579 * 22 21 20 24 24 C 1.38227 * 120.00259 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47327 * 299.99784 * 1 2 3 27 27 H 1.09000 * 109.47233 * 60.00301 * 1 2 3 28 28 H 1.08996 * 109.47327 * 240.00216 * 2 1 3 29 29 H 1.09000 * 109.47233 * 119.99699 * 2 1 3 30 30 H 1.09001 * 109.46894 * 23.91119 * 4 3 2 31 31 H 1.08998 * 109.47265 * 143.91402 * 4 3 2 32 32 H 0.97002 * 119.99942 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46630 * 64.99570 * 18 15 13 34 34 H 1.08997 * 109.47307 * 305.00318 * 18 15 13 35 35 H 1.08003 * 120.00300 * 359.97438 * 20 19 18 36 36 H 1.08003 * 120.00043 * 180.22992 * 21 20 19 37 37 H 1.07993 * 119.99885 * 179.72491 * 22 21 20 38 38 H 1.08003 * 119.99653 * 179.97438 * 23 22 21 39 39 H 1.08008 * 120.00176 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1667 2.1057 -1.2646 5 6 3.5946 2.0056 -1.7363 6 1 4.3190 1.4575 -1.1522 7 6 3.9761 2.6147 -2.9129 8 7 3.0940 3.2825 -3.6239 9 14 5.7461 2.4912 -3.4972 10 1 5.9006 1.2911 -4.3582 11 1 6.0966 3.7068 -4.2748 12 1 6.6482 2.3775 -2.3231 13 6 2.3309 1.9855 1.1635 14 8 2.2937 1.3590 2.2013 15 6 2.7268 3.4395 1.1748 16 1 2.4414 3.9011 0.2295 17 9 4.1114 3.5446 1.3459 18 6 2.0151 4.1529 2.3261 19 6 2.3137 5.6287 2.2638 20 6 3.4077 6.1415 2.9356 21 6 3.6843 7.4945 2.8745 22 6 2.8611 8.3363 2.1502 23 6 1.7642 7.8242 1.4828 24 6 1.4908 6.4704 1.5392 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5054 1.6692 -2.0131 31 1 1.9057 3.1535 -1.1159 32 1 3.3625 3.7106 -4.4519 33 1 2.3675 3.7506 3.2759 34 1 0.9399 3.9959 2.2416 35 1 4.0482 5.4845 3.5053 36 1 4.5412 7.8946 3.3963 37 1 3.0747 9.3940 2.1062 38 1 1.1208 8.4820 0.9172 39 1 0.6335 6.0704 1.0181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778243544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:28 Heat of formation + Delta-G solvation = -69.484514 kcal Electronic energy + Delta-G solvation = -22018.259342 eV Core-core repulsion = 18646.856143 eV Total energy + Delta-G solvation = -3371.403200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.13200 -39.26808 -38.87065 -35.38861 -33.51570 -32.79352 -30.82347 -30.74271 -28.82281 -27.09643 -24.74692 -23.15108 -22.43881 -22.21772 -20.77243 -18.58445 -17.18990 -16.66409 -16.49853 -15.99666 -15.53523 -15.06283 -14.77934 -14.54831 -14.37636 -14.09611 -13.47595 -13.26935 -13.01246 -12.89406 -12.50060 -12.38331 -12.28495 -11.97615 -11.70577 -11.65960 -11.52097 -11.01946 -10.93606 -10.86043 -10.82395 -10.61519 -10.43229 -10.08872 -9.77703 -9.09050 -8.77645 -8.57557 -8.52182 -7.85159 -6.21157 -4.28258 1.45645 1.54598 3.08912 3.24120 3.31220 3.37733 3.64562 3.95665 4.33534 4.78508 4.92549 5.07165 5.10699 5.12333 5.17856 5.25621 5.35298 5.48465 5.57018 5.63930 5.70656 5.74170 5.80480 6.03025 6.10974 6.18632 6.19910 6.25748 6.31447 6.55399 6.58195 6.62444 6.65826 6.78681 7.05659 7.13310 7.40300 7.74730 7.99432 8.14177 8.68919 8.84715 9.40352 10.85780 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.006584 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.041713 B = 4251.422721 C = 5544.445084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.586 5.586 4 C 0.233 3.767 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.891 5.891 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.498 3.502 14 O -0.560 6.560 15 C 0.090 3.910 16 H 0.113 0.887 17 F -0.188 7.188 18 C -0.097 4.097 19 C -0.080 4.080 20 C -0.104 4.104 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.111 4.111 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.266 0.734 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 5.480 8.460 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.013 4.013 3 N -0.316 5.316 4 C 0.113 3.887 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.283 3.717 14 O -0.440 6.440 15 C 0.051 3.949 16 H 0.131 0.869 17 F -0.168 7.168 18 C -0.135 4.135 19 C -0.080 4.080 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.129 4.129 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.487 5.250 8.793 11.180 hybrid contribution 1.113 0.029 -0.697 1.314 sum -3.374 5.279 8.096 10.237 Atomic orbital electron populations 1.22114 0.96547 1.01469 1.02000 1.21323 0.93541 0.83585 1.02896 1.48326 1.61618 1.13670 1.07978 1.19564 0.97819 0.92008 0.79291 1.21479 0.94652 1.34391 1.07216 0.91946 1.24912 0.97929 0.94585 0.96168 1.69910 1.34141 1.33798 1.15106 0.86494 0.84534 0.77638 0.78922 1.20489 1.20973 1.19550 1.20740 0.77770 0.89290 0.83881 1.90602 1.54517 1.66319 1.32576 1.21586 0.77675 0.94118 1.01500 0.86917 1.92845 1.30299 1.96818 1.96861 1.21061 1.01626 0.91163 0.99674 1.19754 0.95730 0.94813 0.97701 1.21095 0.96575 0.95297 0.99245 1.21111 0.99494 0.93666 0.99709 1.21113 0.95557 0.99561 0.98130 1.21100 0.97791 0.95324 0.99603 1.21095 0.99722 0.93533 0.98599 0.92178 0.92931 0.92336 0.90377 0.90607 0.93939 0.94544 0.92463 0.89018 0.89278 0.85928 0.86247 0.86398 0.86141 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.11 1.98 6.19 -4.04 -0.03 1.96 16 3 N -0.59 -12.32 2.47 -175.06 -0.43 -12.75 16 4 C 0.23 5.45 4.94 -5.19 -0.03 5.42 16 5 C -0.54 -14.22 9.32 -34.44 -0.32 -14.54 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 9 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.50 10.57 6.96 -10.98 -0.08 10.50 16 14 O -0.56 -12.67 16.08 5.56 0.09 -12.58 16 15 C 0.09 1.77 3.35 -27.88 -0.09 1.67 16 16 H 0.11 2.29 5.53 -51.93 -0.29 2.01 16 17 F -0.19 -4.09 16.77 2.25 0.04 -4.05 16 18 C -0.10 -1.55 4.82 -27.89 -0.13 -1.68 16 19 C -0.08 -1.21 5.00 -104.63 -0.52 -1.73 16 20 C -0.10 -1.50 9.56 -39.58 -0.38 -1.88 16 21 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 22 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 23 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 24 C -0.11 -1.55 9.70 -39.59 -0.38 -1.94 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 29 H 0.08 1.39 7.23 -51.93 -0.38 1.01 16 30 H 0.04 1.02 8.03 -51.93 -0.42 0.61 16 31 H 0.04 0.87 5.89 -51.93 -0.31 0.57 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.09 1.46 7.99 -51.93 -0.41 1.05 16 34 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 35 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -29.80 336.82 -7.95 -37.76 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.57 Total: 2.58 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.87 Total: -8.37 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.30 Total: -36.45 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.04 Total: -4.05 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.80 -7.95 -37.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778243544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.726 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds