Wall clock time and date at job start Tue Mar 31 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46997 * 2 1 4 4 C 1.46496 * 120.00200 * 274.58968 * 3 2 1 5 5 C 1.50705 * 109.47036 * 263.91892 * 4 3 2 6 6 H 1.07998 * 119.99900 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99490 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99563 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47205 * 89.99738 * 9 7 5 11 11 H 1.48497 * 109.47146 * 209.99842 * 9 7 5 12 12 H 1.48501 * 109.47456 * 329.99709 * 9 7 5 13 13 C 1.34782 * 119.99946 * 94.58834 * 3 2 1 14 14 O 1.21283 * 119.99760 * 4.92162 * 13 3 2 15 15 C 1.50700 * 119.99860 * 184.92104 * 13 3 2 16 16 H 1.09001 * 109.46816 * 15.66843 * 15 13 3 17 17 F 1.39906 * 109.47057 * 255.66871 * 15 13 3 18 18 C 1.52997 * 109.47302 * 135.66780 * 15 13 3 19 19 C 1.50698 * 109.47501 * 184.99954 * 18 15 13 20 20 C 1.38233 * 119.99719 * 269.73273 * 19 18 15 21 21 C 1.38238 * 119.99841 * 179.76811 * 20 19 18 22 22 C 1.38237 * 119.99817 * 0.49462 * 21 20 19 23 23 C 1.38234 * 119.99701 * 359.75579 * 22 21 20 24 24 C 1.38227 * 120.00259 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47327 * 299.99784 * 1 2 3 27 27 H 1.09000 * 109.47233 * 60.00301 * 1 2 3 28 28 H 1.08996 * 109.47327 * 240.00216 * 2 1 3 29 29 H 1.09000 * 109.47233 * 119.99699 * 2 1 3 30 30 H 1.09001 * 109.46894 * 23.91119 * 4 3 2 31 31 H 1.08998 * 109.47265 * 143.91402 * 4 3 2 32 32 H 0.97002 * 119.99942 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46630 * 64.99570 * 18 15 13 34 34 H 1.08997 * 109.47307 * 305.00318 * 18 15 13 35 35 H 1.08003 * 120.00300 * 359.97438 * 20 19 18 36 36 H 1.08003 * 120.00043 * 180.22992 * 21 20 19 37 37 H 1.07993 * 119.99885 * 179.72491 * 22 21 20 38 38 H 1.08003 * 119.99653 * 179.97438 * 23 22 21 39 39 H 1.08008 * 120.00176 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1667 2.1057 -1.2646 5 6 3.5946 2.0056 -1.7363 6 1 4.3190 1.4575 -1.1522 7 6 3.9761 2.6147 -2.9129 8 7 3.0940 3.2825 -3.6239 9 14 5.7461 2.4912 -3.4972 10 1 5.9006 1.2911 -4.3582 11 1 6.0966 3.7068 -4.2748 12 1 6.6482 2.3775 -2.3231 13 6 2.3309 1.9855 1.1635 14 8 2.2937 1.3590 2.2013 15 6 2.7268 3.4395 1.1748 16 1 2.4414 3.9011 0.2295 17 9 4.1114 3.5446 1.3459 18 6 2.0151 4.1529 2.3261 19 6 2.3137 5.6287 2.2638 20 6 3.4077 6.1415 2.9356 21 6 3.6843 7.4945 2.8745 22 6 2.8611 8.3363 2.1502 23 6 1.7642 7.8242 1.4828 24 6 1.4908 6.4704 1.5392 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5054 1.6692 -2.0131 31 1 1.9057 3.1535 -1.1159 32 1 3.3625 3.7106 -4.4519 33 1 2.3675 3.7506 3.2759 34 1 0.9399 3.9959 2.2416 35 1 4.0482 5.4845 3.5053 36 1 4.5412 7.8946 3.3963 37 1 3.0747 9.3940 2.1062 38 1 1.1208 8.4820 0.9172 39 1 0.6335 6.0704 1.0181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778243544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:28 Heat of formation + Delta-G solvation = -83.829986 kcal Electronic energy + Delta-G solvation = -22018.881409 eV Core-core repulsion = 18646.856143 eV Total energy + Delta-G solvation = -3372.025266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.80968 -40.83444 -40.02761 -37.12048 -34.90159 -34.60752 -32.30706 -31.75237 -30.14004 -28.97634 -26.08894 -25.08295 -23.60474 -23.44607 -21.92678 -20.26645 -18.84269 -18.57622 -17.70683 -17.60229 -17.07917 -16.48227 -16.33173 -15.86952 -15.83326 -15.60287 -15.07393 -14.53444 -14.35737 -14.25438 -13.95765 -13.86712 -13.59285 -13.57349 -13.32600 -13.15915 -12.93898 -12.74999 -12.67904 -12.24093 -12.10071 -11.95322 -11.84575 -11.81318 -11.69426 -10.83031 -10.54356 -9.79184 -9.63895 -9.59091 -8.25627 -6.39151 0.41215 0.53033 1.36558 1.37497 1.41770 1.51110 2.07530 2.38516 2.87456 3.05478 3.31581 3.59392 3.75283 3.87462 4.01356 4.15223 4.18168 4.19591 4.32485 4.36412 4.51503 4.59902 4.64117 4.74547 4.80746 4.85457 4.92671 5.00765 5.11448 5.13205 5.19474 5.29762 5.56971 5.58493 5.63566 5.71108 5.75378 5.98822 6.14210 6.36840 6.71265 7.05724 7.32965 8.80007 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.006584 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.041713 B = 4251.422721 C = 5544.445084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 N -0.588 5.588 4 C 0.247 3.753 5 C -0.551 4.551 6 H 0.045 0.955 7 C 0.028 3.972 8 N -0.913 5.913 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.493 3.507 14 O -0.576 6.576 15 C 0.090 3.910 16 H 0.103 0.897 17 F -0.203 7.203 18 C -0.085 4.085 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.270 0.730 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 6.406 8.339 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 N -0.318 5.318 4 C 0.126 3.874 5 C -0.590 4.590 6 H 0.063 0.937 7 C -0.173 4.173 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.279 3.721 14 O -0.457 6.457 15 C 0.052 3.948 16 H 0.121 0.879 17 F -0.184 7.184 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.664 6.161 8.669 11.613 hybrid contribution 1.167 -0.252 -0.653 1.361 sum -3.497 5.909 8.017 10.555 Atomic orbital electron populations 1.22020 0.93857 1.03405 1.01697 1.21556 0.95773 0.81986 1.02736 1.48371 1.61570 1.14681 1.07152 1.19246 0.96176 0.91972 0.79966 1.21619 0.95676 1.34320 1.07340 0.93679 1.25540 1.01164 0.94327 0.96292 1.69969 1.35506 1.34226 1.15458 0.85676 0.80432 0.78134 0.78247 1.19501 1.20166 1.20330 1.21031 0.77457 0.89927 0.83650 1.90582 1.55333 1.66875 1.32939 1.21684 0.77059 0.93390 1.02715 0.87949 1.92804 1.31724 1.96833 1.96991 1.20955 1.01861 0.91719 0.97725 1.19765 0.96868 0.94234 0.99254 1.21260 0.96657 0.96412 0.99752 1.21439 1.00315 0.93017 0.99696 1.21524 0.94793 1.01041 0.96905 1.21461 0.98299 0.95057 0.99528 1.21315 1.00001 0.94338 0.98670 0.89144 0.93262 0.92500 0.90298 0.90950 0.94512 0.95007 0.92123 0.89397 0.87875 0.86150 0.83937 0.83430 0.83745 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 10.24 71.98 0.74 -3.61 16 2 C 0.10 3.64 6.19 86.38 0.53 4.17 16 3 N -0.59 -24.90 2.47 -826.15 -2.04 -26.94 16 4 C 0.25 11.68 4.94 85.64 0.42 12.10 16 5 C -0.55 -29.33 9.32 25.60 0.24 -29.09 16 6 H 0.04 2.52 7.81 -2.91 -0.02 2.49 16 7 C 0.03 1.49 5.46 84.66 0.46 1.95 16 8 N -0.91 -49.75 13.29 21.45 0.28 -49.46 16 9 Si 0.95 42.89 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.49 21.19 6.96 87.66 0.61 21.80 16 14 O -0.58 -26.23 16.08 -3.04 -0.05 -26.28 16 15 C 0.09 3.60 3.35 29.85 0.10 3.70 16 16 H 0.10 4.27 5.53 -2.39 -0.01 4.26 16 17 F -0.20 -9.04 16.77 44.97 0.75 -8.28 16 18 C -0.08 -2.72 4.82 29.85 0.14 -2.58 16 19 C -0.10 -3.04 5.00 -19.87 -0.10 -3.13 16 20 C -0.12 -3.49 9.56 22.27 0.21 -3.28 16 21 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 22 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 23 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 24 C -0.13 -3.39 9.70 22.26 0.22 -3.17 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 2.78 8.11 -2.39 -0.02 2.76 16 29 H 0.07 2.63 7.23 -2.39 -0.02 2.62 16 30 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 31 H 0.03 1.55 5.89 -2.39 -0.01 1.53 16 32 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.09 2.85 7.99 -2.39 -0.02 2.83 16 34 H 0.10 2.93 8.09 -2.39 -0.02 2.91 16 35 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -62.64 336.82 6.25 -56.39 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 1.03 Total: 18.77 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 4.25 Total: -9.11 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.76 Total: -76.41 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 0.75 Total: -8.28 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -62.64 6.25 -56.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778243544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.443 kcal (2) G-P(sol) polarization free energy of solvation -62.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds