Wall clock time and date at job start Tue Mar 31 2020 01:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99977 * 2 1 4 4 C 1.53003 * 112.84751 * 296.72843 * 3 2 1 5 5 C 1.50701 * 109.47169 * 291.15944 * 4 3 2 6 6 O 1.21305 * 119.99760 * 355.57360 * 5 4 3 7 7 N 1.34775 * 119.99713 * 175.57742 * 5 4 3 8 8 C 1.40603 * 119.99665 * 179.97438 * 7 5 4 9 9 C 1.40640 * 126.08224 * 0.02562 * 8 7 5 10 10 N 1.30905 * 108.38718 * 180.02562 * 9 8 7 11 11 N 1.40062 * 108.40711 * 359.97438 * 10 9 8 12 12 C 1.37324 * 126.06960 * 180.02562 * 11 10 9 13 13 H 1.08010 * 120.00206 * 185.21037 * 12 11 10 14 14 C 1.38986 * 120.00203 * 5.21216 * 12 11 10 15 15 N 1.31293 * 119.99768 * 354.74237 * 14 12 11 16 16 Si 1.86796 * 120.00094 * 174.74416 * 14 12 11 17 17 H 1.48494 * 109.47355 * 94.99346 * 16 14 12 18 18 H 1.48507 * 109.47273 * 214.99466 * 16 14 12 19 19 H 1.48504 * 109.47270 * 334.99199 * 16 14 12 20 20 C 1.35677 * 126.07893 * 179.71513 * 8 7 5 21 21 C 1.53777 * 113.69491 * 67.99897 * 3 2 1 22 22 C 1.53779 * 87.08249 * 89.12486 * 21 3 2 23 23 C 1.53783 * 87.08138 * 25.43398 * 22 21 3 24 24 H 1.09005 * 109.47027 * 305.49654 * 1 2 3 25 25 H 1.08997 * 109.47375 * 65.49725 * 1 2 3 26 26 H 1.09003 * 109.47186 * 185.50176 * 1 2 3 27 27 H 1.09000 * 109.46962 * 171.15572 * 4 3 2 28 28 H 1.09002 * 109.46614 * 51.15584 * 4 3 2 29 29 H 0.96998 * 120.00448 * 359.97438 * 7 5 4 30 30 H 1.08003 * 125.80933 * 359.96482 * 9 8 7 31 31 H 0.97006 * 119.99920 * 180.02562 * 15 14 12 32 32 H 1.08002 * 126.24996 * 359.97438 * 20 8 7 33 33 H 1.08998 * 113.61588 * 203.67838 * 21 3 2 34 34 H 1.09000 * 113.61245 * 334.58211 * 21 3 2 35 35 H 1.09000 * 113.62098 * 270.88615 * 22 21 3 36 36 H 1.09002 * 113.69002 * 139.98845 * 22 21 3 37 37 H 1.08997 * 113.61842 * 220.02001 * 23 22 21 38 38 H 1.09007 * 113.61792 * 89.11120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6725 2.1061 -1.2593 5 6 2.3687 1.4923 -2.4466 6 8 3.1295 0.5608 -2.2887 7 7 2.1461 1.9785 -3.6838 8 6 2.7961 1.4061 -4.7914 9 6 3.6987 0.3282 -4.7562 10 7 4.0937 0.0802 -5.9793 11 7 3.4612 0.9858 -6.8405 12 6 3.6156 1.0478 -8.2036 13 1 3.1441 1.8410 -8.7650 14 6 4.3784 0.0898 -8.8610 15 7 5.0354 -0.8132 -8.1705 16 14 4.4688 0.0870 -10.7267 17 1 5.6742 0.8353 -11.1650 18 1 4.5499 -1.3127 -11.2163 19 1 3.2541 0.7360 -11.2822 20 6 2.6596 1.7918 -6.0850 21 6 1.7797 2.0846 1.3056 22 6 3.0801 1.4476 1.8232 23 6 3.5072 1.3132 0.3519 24 1 -0.3633 0.5967 0.8367 25 1 -0.3634 0.4262 -0.9351 26 1 -0.3634 -1.0229 0.0985 27 1 2.0060 3.1364 -1.1351 28 1 0.5948 2.0901 -1.4218 29 1 1.5376 2.7232 -3.8100 30 1 4.0133 -0.2039 -3.8705 31 1 5.5681 -1.4816 -8.6292 32 1 2.0330 2.5921 -6.4501 33 1 1.8409 3.1662 1.1853 34 1 0.8911 1.7681 1.8518 35 1 2.9290 0.4909 2.3231 36 1 3.7042 2.1317 2.3982 37 1 4.0132 0.3741 0.1282 38 1 4.0408 2.1840 -0.0292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790543315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:56 Heat of formation + Delta-G solvation = 30.193911 kcal Electronic energy + Delta-G solvation = -21705.140384 eV Core-core repulsion = 18357.979527 eV Total energy + Delta-G solvation = -3347.160857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40723 -39.53419 -38.02989 -35.55121 -34.08184 -33.08759 -30.62517 -29.97403 -27.55146 -27.05364 -25.50538 -24.82039 -23.18036 -20.94874 -20.22295 -19.38964 -19.31299 -17.44977 -16.63182 -16.06135 -15.85583 -15.40990 -15.07573 -15.01628 -14.66264 -14.14432 -13.97364 -13.68209 -13.19663 -13.15526 -12.83111 -12.36720 -12.13497 -11.68644 -11.59594 -11.36162 -11.33166 -11.21764 -11.00997 -10.90004 -10.82795 -10.50499 -10.12257 -10.02551 -9.46359 -9.10859 -8.95676 -8.73133 -7.99782 -6.62626 -6.51840 -4.18037 2.91521 3.07145 3.10670 3.12958 3.58300 3.73494 3.77068 3.92654 4.46183 4.48064 4.58190 4.70394 4.83651 4.88215 5.05480 5.18335 5.23885 5.31153 5.38071 5.49395 5.50565 5.65536 5.70032 5.72192 5.81375 6.18880 6.28228 6.29403 6.31075 6.53690 6.96866 7.03300 7.20687 7.31008 7.32571 7.91300 8.27264 8.36810 8.70578 8.98723 9.43703 9.73333 10.44515 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.044564 B = 0.003421 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.165999 B = 8181.955537 C = 8278.259803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.112 3.888 4 C -0.156 4.156 5 C 0.499 3.501 6 O -0.518 6.518 7 N -0.631 5.631 8 C -0.057 4.057 9 C -0.033 4.033 10 N -0.261 5.261 11 N -0.145 5.145 12 C -0.325 4.325 13 H 0.115 0.885 14 C 0.047 3.953 15 N -0.770 5.770 16 Si 0.933 3.067 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.086 4.086 21 C -0.165 4.165 22 C -0.139 4.139 23 C -0.110 4.110 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.394 0.606 30 H 0.176 0.824 31 H 0.274 0.726 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 7.511 14.007 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.264 6.264 3 C 0.072 3.928 4 C -0.196 4.196 5 C 0.285 3.715 6 O -0.394 6.394 7 N -0.275 5.275 8 C -0.162 4.162 9 C -0.209 4.209 10 N -0.093 5.093 11 N 0.087 4.913 12 C -0.457 4.457 13 H 0.133 0.867 14 C -0.170 4.170 15 N -0.397 5.397 16 Si 0.757 3.243 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.237 4.237 21 C -0.202 4.202 22 C -0.176 4.176 23 C -0.147 4.147 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.226 0.774 30 H 0.193 0.807 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.915 5.718 13.356 16.090 hybrid contribution -1.245 1.285 -0.499 1.858 sum -8.160 7.004 12.857 16.761 Atomic orbital electron populations 1.22746 0.82008 1.02564 0.99767 1.88049 1.18765 1.25161 1.94459 1.22188 0.96111 0.83546 0.90995 1.22155 1.01925 1.01045 0.94515 1.20166 0.83522 0.84459 0.83353 1.90611 1.36255 1.27802 1.84694 1.42586 1.45087 1.34635 1.05142 1.17299 1.08740 1.04542 0.85667 1.24112 1.00850 0.98999 0.96909 1.78234 1.19741 1.13638 0.97640 1.44527 1.23200 1.17955 1.05584 1.19847 1.33863 1.14082 0.77912 0.86728 1.25630 0.95198 0.95071 1.01149 1.70228 1.21240 1.12061 1.36169 0.85836 0.79256 0.78392 0.80792 1.19701 1.20069 1.18804 1.21257 1.07294 1.04809 0.90295 1.23579 0.99047 1.00165 0.97454 1.22820 0.96715 1.00975 0.97140 1.22853 0.93800 1.03843 0.94194 0.94139 0.94113 0.89708 0.88246 0.89356 0.77359 0.80701 0.91534 0.83862 0.89326 0.91136 0.89967 0.91495 0.89541 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.52 101.05 1.06 1.34 16 2 O -0.35 -5.08 10.29 -37.00 -0.38 -5.46 16 3 C 0.11 1.41 0.39 -89.81 -0.04 1.37 16 4 C -0.16 -1.88 5.11 -27.88 -0.14 -2.02 16 5 C 0.50 8.76 7.59 -10.99 -0.08 8.67 16 6 O -0.52 -11.19 11.85 3.77 0.04 -11.14 16 7 N -0.63 -11.36 5.47 -10.00 -0.05 -11.42 16 8 C -0.06 -1.34 6.90 -83.84 -0.58 -1.92 16 9 C -0.03 -0.90 10.85 -17.04 -0.18 -1.08 16 10 N -0.26 -7.79 10.41 30.80 0.32 -7.46 16 11 N -0.14 -4.06 3.74 -11.41 -0.04 -4.10 16 12 C -0.32 -8.76 10.24 -14.81 -0.15 -8.91 16 13 H 0.12 2.76 7.84 -52.48 -0.41 2.35 16 14 C 0.05 1.22 5.50 -17.50 -0.10 1.13 16 15 N -0.77 -21.93 11.83 55.49 0.66 -21.27 16 16 Si 0.93 19.21 29.55 -169.99 -5.02 14.18 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 C -0.09 -2.06 11.49 -16.39 -0.19 -2.25 16 21 C -0.16 -1.55 7.19 -25.92 -0.19 -1.73 16 22 C -0.14 -1.42 8.02 -25.92 -0.21 -1.63 16 23 C -0.11 -1.43 6.07 -25.92 -0.16 -1.58 16 24 H 0.04 0.35 6.71 -51.93 -0.35 0.00 16 25 H 0.04 0.43 6.86 -51.93 -0.36 0.08 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.10 0.94 7.99 -51.93 -0.42 0.53 16 28 H 0.09 0.90 6.68 -51.93 -0.35 0.55 16 29 H 0.39 5.42 8.83 -40.82 -0.36 5.06 16 30 H 0.18 4.73 5.92 -52.48 -0.31 4.42 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.14 2.87 8.06 -52.49 -0.42 2.45 16 33 H 0.09 0.68 8.00 -51.93 -0.42 0.27 16 34 H 0.07 0.61 6.85 -51.93 -0.36 0.25 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.35 7.98 -51.93 -0.41 0.94 16 38 H 0.09 1.10 8.10 -51.92 -0.42 0.68 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -34.61 316.89 -5.63 -40.25 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -4.98 Total: 10.26 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.95 Total: -8.62 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.88 Total: -44.25 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.34 Total: -16.60 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.61 -5.63 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790543315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.442 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds