Wall clock time and date at job start Tue Mar 31 2020 01:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99977 * 2 1 4 4 C 1.53003 * 112.84751 * 296.72843 * 3 2 1 5 5 C 1.50701 * 109.47169 * 291.15944 * 4 3 2 6 6 O 1.21305 * 119.99760 * 355.57360 * 5 4 3 7 7 N 1.34775 * 119.99713 * 175.57742 * 5 4 3 8 8 C 1.40603 * 119.99665 * 179.97438 * 7 5 4 9 9 C 1.40640 * 126.08224 * 0.02562 * 8 7 5 10 10 N 1.30905 * 108.38718 * 180.02562 * 9 8 7 11 11 N 1.40062 * 108.40711 * 359.97438 * 10 9 8 12 12 C 1.37324 * 126.06960 * 180.02562 * 11 10 9 13 13 H 1.08010 * 120.00206 * 185.21037 * 12 11 10 14 14 C 1.38986 * 120.00203 * 5.21216 * 12 11 10 15 15 N 1.31293 * 119.99768 * 354.74237 * 14 12 11 16 16 Si 1.86796 * 120.00094 * 174.74416 * 14 12 11 17 17 H 1.48494 * 109.47355 * 94.99346 * 16 14 12 18 18 H 1.48507 * 109.47273 * 214.99466 * 16 14 12 19 19 H 1.48504 * 109.47270 * 334.99199 * 16 14 12 20 20 C 1.35677 * 126.07893 * 179.71513 * 8 7 5 21 21 C 1.53777 * 113.69491 * 67.99897 * 3 2 1 22 22 C 1.53779 * 87.08249 * 89.12486 * 21 3 2 23 23 C 1.53783 * 87.08138 * 25.43398 * 22 21 3 24 24 H 1.09005 * 109.47027 * 305.49654 * 1 2 3 25 25 H 1.08997 * 109.47375 * 65.49725 * 1 2 3 26 26 H 1.09003 * 109.47186 * 185.50176 * 1 2 3 27 27 H 1.09000 * 109.46962 * 171.15572 * 4 3 2 28 28 H 1.09002 * 109.46614 * 51.15584 * 4 3 2 29 29 H 0.96998 * 120.00448 * 359.97438 * 7 5 4 30 30 H 1.08003 * 125.80933 * 359.96482 * 9 8 7 31 31 H 0.97006 * 119.99920 * 180.02562 * 15 14 12 32 32 H 1.08002 * 126.24996 * 359.97438 * 20 8 7 33 33 H 1.08998 * 113.61588 * 203.67838 * 21 3 2 34 34 H 1.09000 * 113.61245 * 334.58211 * 21 3 2 35 35 H 1.09000 * 113.62098 * 270.88615 * 22 21 3 36 36 H 1.09002 * 113.69002 * 139.98845 * 22 21 3 37 37 H 1.08997 * 113.61842 * 220.02001 * 23 22 21 38 38 H 1.09007 * 113.61792 * 89.11120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6725 2.1061 -1.2593 5 6 2.3687 1.4923 -2.4466 6 8 3.1295 0.5608 -2.2887 7 7 2.1461 1.9785 -3.6838 8 6 2.7961 1.4061 -4.7914 9 6 3.6987 0.3282 -4.7562 10 7 4.0937 0.0802 -5.9793 11 7 3.4612 0.9858 -6.8405 12 6 3.6156 1.0478 -8.2036 13 1 3.1441 1.8410 -8.7650 14 6 4.3784 0.0898 -8.8610 15 7 5.0354 -0.8132 -8.1705 16 14 4.4688 0.0870 -10.7267 17 1 5.6742 0.8353 -11.1650 18 1 4.5499 -1.3127 -11.2163 19 1 3.2541 0.7360 -11.2822 20 6 2.6596 1.7918 -6.0850 21 6 1.7797 2.0846 1.3056 22 6 3.0801 1.4476 1.8232 23 6 3.5072 1.3132 0.3519 24 1 -0.3633 0.5967 0.8367 25 1 -0.3634 0.4262 -0.9351 26 1 -0.3634 -1.0229 0.0985 27 1 2.0060 3.1364 -1.1351 28 1 0.5948 2.0901 -1.4218 29 1 1.5376 2.7232 -3.8100 30 1 4.0133 -0.2039 -3.8705 31 1 5.5681 -1.4816 -8.6292 32 1 2.0330 2.5921 -6.4501 33 1 1.8409 3.1662 1.1853 34 1 0.8911 1.7681 1.8518 35 1 2.9290 0.4909 2.3231 36 1 3.7042 2.1317 2.3982 37 1 4.0132 0.3741 0.1282 38 1 4.0408 2.1840 -0.0292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790543315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:55 Heat of formation + Delta-G solvation = 5.052990 kcal Electronic energy + Delta-G solvation = -21706.230577 eV Core-core repulsion = 18357.979527 eV Total energy + Delta-G solvation = -3348.251049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.77417 -41.10132 -39.49386 -36.47995 -35.83717 -34.90735 -32.33530 -31.47345 -29.32232 -27.91987 -26.80044 -26.31289 -24.28321 -22.81217 -21.75928 -21.11978 -20.30914 -19.27973 -17.94515 -17.38445 -17.19993 -16.97739 -16.47963 -16.03192 -15.97824 -15.62651 -15.17261 -15.01747 -14.80357 -14.59030 -14.53830 -13.49306 -13.27494 -13.22425 -13.12764 -12.88497 -12.83260 -12.50039 -12.23138 -12.07687 -11.89208 -11.74005 -11.64713 -11.03871 -10.98193 -10.80047 -10.55403 -10.23632 -10.08428 -8.48583 -8.46412 -6.23277 1.25313 1.39617 1.57407 1.60505 1.91369 2.07830 2.35162 2.57143 2.84035 2.96868 3.08968 3.57177 3.71967 3.74976 3.98834 4.21364 4.42296 4.43655 4.47085 4.52087 4.60883 4.64743 4.66515 4.84008 4.88732 4.92911 5.01660 5.09271 5.13196 5.25275 5.31242 5.32302 5.45452 5.55923 5.97547 6.35422 6.44280 6.75752 6.86420 7.47317 7.54974 7.71840 8.53234 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.044564 B = 0.003421 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.165999 B = 8181.955537 C = 8278.259803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.386 6.386 3 C 0.098 3.902 4 C -0.144 4.144 5 C 0.494 3.506 6 O -0.563 6.563 7 N -0.624 5.624 8 C -0.041 4.041 9 C -0.062 4.062 10 N -0.313 5.313 11 N -0.170 5.170 12 C -0.356 4.356 13 H 0.141 0.859 14 C -0.008 4.008 15 N -0.827 5.827 16 Si 1.020 2.980 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.243 1.243 20 C -0.083 4.083 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.125 4.125 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.418 0.582 30 H 0.164 0.836 31 H 0.276 0.724 32 H 0.188 0.812 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 10.484 14.249 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.305 6.305 3 C 0.058 3.942 4 C -0.183 4.183 5 C 0.282 3.718 6 O -0.441 6.441 7 N -0.270 5.270 8 C -0.147 4.147 9 C -0.237 4.237 10 N -0.145 5.145 11 N 0.061 4.939 12 C -0.487 4.487 13 H 0.158 0.842 14 C -0.219 4.219 15 N -0.455 5.455 16 Si 0.839 3.161 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.166 1.166 20 C -0.233 4.233 21 C -0.179 4.179 22 C -0.170 4.170 23 C -0.163 4.163 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.155 0.845 28 H 0.135 0.865 29 H 0.255 0.745 30 H 0.180 0.820 31 H 0.085 0.915 32 H 0.205 0.795 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.350 8.745 13.639 18.706 hybrid contribution -0.525 0.367 -0.428 0.770 sum -9.875 9.112 13.211 18.843 Atomic orbital electron populations 1.22918 0.80319 1.03408 1.00949 1.88006 1.20831 1.26860 1.94777 1.22418 0.95398 0.83528 0.92852 1.22234 1.02873 1.02155 0.91080 1.21327 0.82607 0.83575 0.84293 1.90615 1.38215 1.29930 1.85376 1.42596 1.45199 1.35274 1.03926 1.17391 1.07100 1.02836 0.87400 1.24116 1.02676 1.00824 0.96062 1.78126 1.21737 1.15735 0.98917 1.44831 1.24279 1.18634 1.06192 1.20621 1.34703 1.15354 0.78030 0.84171 1.26905 0.93982 0.93993 1.07001 1.70417 1.22818 1.13429 1.38808 0.84573 0.80101 0.78314 0.73155 1.18919 1.20271 1.16564 1.22010 1.06519 1.04725 0.90059 1.23510 0.98701 1.01159 0.94573 1.22778 0.97729 1.01244 0.95261 1.22928 0.94519 1.01826 0.96992 0.91387 0.93983 0.89603 0.84515 0.86487 0.74479 0.81951 0.91477 0.79517 0.86516 0.89775 0.90927 0.89562 0.93844 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.52 113.37 1.19 1.59 16 2 O -0.39 -11.08 10.29 -147.29 -1.52 -12.60 16 3 C 0.10 2.28 0.39 -10.27 0.00 2.28 16 4 C -0.14 -2.99 5.11 29.85 0.15 -2.84 16 5 C 0.49 16.81 7.59 87.66 0.67 17.48 16 6 O -0.56 -25.17 11.85 -1.41 -0.02 -25.19 16 7 N -0.62 -21.35 5.47 -303.93 -1.66 -23.01 16 8 C -0.04 -1.93 6.90 37.73 0.26 -1.67 16 9 C -0.06 -3.49 10.85 85.42 0.93 -2.56 16 10 N -0.31 -19.52 10.41 -56.47 -0.59 -20.10 16 11 N -0.17 -9.68 3.74 -190.01 -0.71 -10.39 16 12 C -0.36 -19.26 10.24 84.01 0.86 -18.40 16 13 H 0.14 6.54 7.84 -2.91 -0.02 6.52 16 14 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 15 N -0.83 -48.97 11.83 21.66 0.26 -48.72 16 16 Si 1.02 39.29 29.55 68.60 2.03 41.32 16 17 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.24 -8.42 7.11 99.48 0.71 -7.71 16 20 C -0.08 -3.91 11.49 83.37 0.96 -2.95 16 21 C -0.14 -2.11 7.19 31.12 0.22 -1.89 16 22 C -0.13 -2.47 8.02 31.12 0.25 -2.23 16 23 C -0.13 -3.25 6.07 31.12 0.19 -3.07 16 24 H 0.07 0.94 6.71 -2.38 -0.02 0.93 16 25 H 0.04 0.80 6.86 -2.39 -0.02 0.78 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.14 1.88 7.99 -2.39 -0.02 1.87 16 28 H 0.12 1.83 6.68 -2.39 -0.02 1.82 16 29 H 0.42 10.06 8.83 -92.71 -0.82 9.24 16 30 H 0.16 9.44 5.92 -2.91 -0.02 9.43 16 31 H 0.28 15.00 8.31 -92.70 -0.77 14.23 16 32 H 0.19 6.89 8.06 -2.91 -0.02 6.86 16 33 H 0.12 1.13 8.00 -2.39 -0.02 1.11 16 34 H 0.08 1.07 6.85 -2.39 -0.02 1.05 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.04 1.47 7.98 -2.39 -0.02 1.45 16 38 H 0.09 2.24 8.10 -2.38 -0.02 2.23 16 Total: -1.00 -81.99 316.89 4.20 -77.78 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.27 Total: 35.09 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 6.14 Total: -14.19 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -2.70 Total: -102.21 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.53 Total: -37.79 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -81.99 4.20 -77.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790543315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.835 kcal (2) G-P(sol) polarization free energy of solvation -81.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds