Wall clock time and date at job start Tue Mar 31 2020 01:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00151 * 2 1 4 4 C 1.52993 * 109.47296 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47186 * 65.00312 * 4 3 2 6 6 C 1.36802 * 119.99957 * 267.71730 * 5 4 3 7 7 H 1.07999 * 119.99970 * 137.39164 * 6 5 4 8 8 C 1.39053 * 120.00104 * 317.39342 * 6 5 4 9 9 N 1.31370 * 119.99840 * 345.98084 * 8 6 5 10 10 Si 1.86795 * 120.00054 * 165.98303 * 8 6 5 11 11 H 1.48499 * 109.47274 * 90.00069 * 10 8 6 12 12 H 1.48500 * 109.47017 * 210.00165 * 10 8 6 13 13 H 1.48507 * 109.47332 * 329.99825 * 10 8 6 14 14 C 1.34776 * 120.00056 * 87.71740 * 5 4 3 15 15 O 1.21806 * 120.00316 * 353.79721 * 14 5 4 16 16 C 1.41569 * 119.99870 * 174.06772 * 14 5 4 17 17 C 1.35324 * 120.00024 * 187.96472 * 16 14 5 18 18 C 1.46742 * 119.99666 * 22.36479 * 17 16 14 19 19 C 1.36794 * 126.24625 * 186.11692 * 18 17 16 20 20 N 1.36072 * 106.71526 * 179.84729 * 19 18 17 21 21 C 1.46496 * 126.18311 * 180.13568 * 20 19 18 22 22 C 1.35858 * 107.63934 * 0.41908 * 20 19 18 23 23 N 1.30183 * 109.11970 * 359.73482 * 22 20 19 24 24 H 1.08999 * 109.47302 * 60.00314 * 1 2 3 25 25 H 1.09008 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47440 * 299.99553 * 1 2 3 27 27 H 1.09006 * 109.46825 * 59.99896 * 3 2 1 28 28 H 1.09000 * 109.47111 * 300.00243 * 3 2 1 29 29 H 1.09000 * 109.47452 * 304.99870 * 4 3 2 30 30 H 1.09003 * 109.47029 * 185.00411 * 4 3 2 31 31 H 0.96999 * 119.99755 * 179.97438 * 9 8 6 32 32 H 1.07999 * 119.99657 * 7.96278 * 16 14 5 33 33 H 1.07995 * 120.00189 * 202.36496 * 17 16 14 34 34 H 1.08004 * 126.64678 * 359.96386 * 19 18 17 35 35 H 1.09005 * 109.47137 * 270.31175 * 21 20 19 36 36 H 1.09002 * 109.47159 * 30.30656 * 21 20 19 37 37 H 1.08993 * 109.47544 * 150.31481 * 21 20 19 38 38 H 1.08003 * 125.43794 * 179.70754 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1426 -0.7921 -1.3206 7 1 3.7959 -1.3347 -2.1876 8 6 4.7576 -1.4719 -0.2750 9 7 5.4205 -0.8049 0.6423 10 14 4.6413 -3.3335 -0.1749 11 1 5.7796 -3.9409 -0.9102 12 1 4.6888 -3.7566 1.2478 13 1 3.3630 -3.7831 -0.7826 14 6 4.2191 1.3291 -2.3336 15 8 3.9642 2.5199 -2.3074 16 6 4.7646 0.7476 -3.5034 17 6 5.1580 1.5359 -4.5306 18 6 5.4885 2.9451 -4.2892 19 6 5.7843 3.8812 -5.2418 20 7 6.0228 5.0478 -4.5834 21 6 6.3764 6.3304 -5.1966 22 6 5.8800 4.8069 -3.2540 23 7 5.5623 3.5566 -3.0789 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0903 31 1 5.8493 -1.2791 1.3718 32 1 4.8668 -0.3251 -3.5760 33 1 5.2288 1.1279 -5.5280 34 1 5.8196 3.7250 -6.3099 35 1 7.4604 6.4040 -5.2857 36 1 5.9253 6.3964 -6.1867 37 1 6.0070 7.1450 -4.5739 38 1 6.0098 5.5360 -2.4679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822287609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:22 Heat of formation + Delta-G solvation = 50.103948 kcal Electronic energy + Delta-G solvation = -22129.553230 eV Core-core repulsion = 18783.255736 eV Total energy + Delta-G solvation = -3346.297493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24983 -38.44982 -36.81934 -34.68161 -33.60689 -31.92168 -31.28880 -29.30776 -28.42219 -26.44990 -25.66811 -24.50381 -23.16641 -21.29538 -20.55097 -19.58128 -18.26384 -17.04850 -16.12854 -15.62614 -15.32482 -15.22431 -15.14939 -14.36640 -14.16133 -14.02523 -13.75399 -13.54065 -12.88058 -12.73183 -12.62089 -12.59133 -12.12372 -11.80004 -11.42779 -11.28965 -10.98966 -10.85724 -10.76754 -10.46486 -10.19530 -9.83195 -9.47767 -9.09581 -8.87772 -8.76689 -8.64675 -7.84754 -7.05673 -6.99730 -6.06435 -3.77783 1.79497 2.80572 3.18873 3.30461 3.37082 3.42912 4.26761 4.33469 4.67194 4.77316 4.89485 5.11224 5.17102 5.22410 5.23788 5.32547 5.42848 5.77509 5.78737 5.84930 5.91317 6.09648 6.15763 6.26337 6.42210 6.59206 6.70426 6.72807 6.92728 7.21063 7.23722 7.51498 7.58229 7.71239 7.73907 8.04050 8.32211 8.67211 8.84488 9.40539 9.90421 10.35514 10.94575 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.005288 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.098694 B = 5293.677479 C = 6000.827428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.054 3.946 4 C 0.120 3.880 5 N -0.430 5.430 6 C -0.311 4.311 7 H 0.081 0.919 8 C 0.045 3.955 9 N -0.869 5.869 10 Si 0.913 3.087 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.491 3.509 15 O -0.558 6.558 16 C -0.138 4.138 17 C -0.063 4.063 18 C 0.037 3.963 19 C -0.056 4.056 20 N -0.477 5.477 21 C 0.078 3.922 22 C 0.149 3.851 23 N -0.382 5.382 24 H 0.030 0.970 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.265 0.735 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.168 0.832 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 8.548 -8.329 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.024 4.024 4 C -0.004 4.004 5 N -0.150 5.150 6 C -0.440 4.440 7 H 0.098 0.902 8 C -0.160 4.160 9 N -0.507 5.507 10 Si 0.740 3.260 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.195 1.195 14 C 0.283 3.717 15 O -0.441 6.441 16 C -0.161 4.161 17 C -0.085 4.085 18 C -0.091 4.091 19 C -0.189 4.189 20 N -0.163 5.163 21 C -0.065 4.065 22 C -0.133 4.133 23 N -0.099 5.099 24 H 0.048 0.952 25 H 0.094 0.906 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.185 0.815 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.866 8.669 -7.362 11.406 hybrid contribution -0.198 -0.314 -0.599 0.704 sum -1.064 8.355 -7.961 11.589 Atomic orbital electron populations 1.22623 0.83808 1.01525 0.98651 1.88147 1.17035 1.27993 1.94988 1.23069 0.97110 0.84010 0.98211 1.21332 0.88581 0.98785 0.91693 1.43197 1.56959 1.06252 1.08548 1.19171 1.36717 0.81862 1.06201 0.90173 1.25364 0.94300 0.99469 0.96852 1.69840 1.30960 1.36089 1.13771 0.86170 0.78528 0.83855 0.77429 1.20702 1.21076 1.19468 1.17168 0.83010 0.86125 0.85373 1.90709 1.54964 1.14543 1.83864 1.22350 0.98466 1.00449 0.94808 1.21208 1.00123 0.89714 0.97501 1.19580 1.06562 0.94370 0.88572 1.22604 1.11798 0.86275 0.98254 1.45406 1.53920 1.08889 1.08075 1.21881 1.01290 0.84011 0.99329 1.25443 1.07134 0.97071 0.83688 1.71509 1.10913 1.03168 1.24323 0.95150 0.90588 0.95360 0.94870 0.94209 0.87499 0.91414 0.92480 0.85292 0.85870 0.81509 0.91289 0.90467 0.90038 0.79018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -8.30 10.28 -35.23 -0.36 -8.66 16 3 C 0.05 1.21 6.27 37.15 0.23 1.44 16 4 C 0.12 3.09 5.30 -4.05 -0.02 3.07 16 5 N -0.43 -11.59 2.45 -118.07 -0.29 -11.88 16 6 C -0.31 -8.40 7.79 -15.03 -0.12 -8.52 16 7 H 0.08 2.10 7.11 -52.49 -0.37 1.73 16 8 C 0.04 1.20 5.07 -17.45 -0.09 1.11 16 9 N -0.87 -24.41 11.41 55.50 0.63 -23.78 16 10 Si 0.91 20.91 29.58 -169.99 -5.03 15.89 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 14 C 0.49 12.91 6.98 -14.99 -0.10 12.80 16 15 O -0.56 -15.24 11.88 5.09 0.06 -15.18 16 16 C -0.14 -3.16 9.15 -39.35 -0.36 -3.52 16 17 C -0.06 -1.25 10.08 -37.19 -0.37 -1.62 16 18 C 0.04 0.74 6.20 -83.20 -0.52 0.23 16 19 C -0.06 -0.88 11.53 -16.19 -0.19 -1.07 16 20 N -0.48 -6.83 3.15 -125.46 -0.39 -7.23 16 21 C 0.08 0.66 11.16 59.84 0.67 1.33 16 22 C 0.15 2.61 12.55 -89.89 -1.13 1.48 16 23 N -0.38 -8.59 7.20 -11.10 -0.08 -8.67 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.11 2.93 5.64 -51.93 -0.29 2.64 16 30 H 0.07 1.77 7.59 -51.93 -0.39 1.37 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.13 2.80 6.58 -52.49 -0.35 2.46 16 33 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.17 1.96 8.06 -52.48 -0.42 1.54 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.19 2.71 8.06 -52.48 -0.42 2.28 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -35.33 324.90 -6.64 -41.97 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.19 Total: 4.27 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.88 Total: 8.38 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.13 Total: -51.55 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.30 Total: -23.85 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.33 -6.64 -41.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822287609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.072 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds