Wall clock time and date at job start Tue Mar 31 2020 01:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00151 * 2 1 4 4 C 1.52993 * 109.47296 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47186 * 65.00312 * 4 3 2 6 6 C 1.36802 * 119.99957 * 267.71730 * 5 4 3 7 7 H 1.07999 * 119.99970 * 137.39164 * 6 5 4 8 8 C 1.39053 * 120.00104 * 317.39342 * 6 5 4 9 9 N 1.31370 * 119.99840 * 345.98084 * 8 6 5 10 10 Si 1.86795 * 120.00054 * 165.98303 * 8 6 5 11 11 H 1.48499 * 109.47274 * 90.00069 * 10 8 6 12 12 H 1.48500 * 109.47017 * 210.00165 * 10 8 6 13 13 H 1.48507 * 109.47332 * 329.99825 * 10 8 6 14 14 C 1.34776 * 120.00056 * 87.71740 * 5 4 3 15 15 O 1.21806 * 120.00316 * 353.79721 * 14 5 4 16 16 C 1.41569 * 119.99870 * 174.06772 * 14 5 4 17 17 C 1.35324 * 120.00024 * 187.96472 * 16 14 5 18 18 C 1.46742 * 119.99666 * 22.36479 * 17 16 14 19 19 C 1.36794 * 126.24625 * 186.11692 * 18 17 16 20 20 N 1.36072 * 106.71526 * 179.84729 * 19 18 17 21 21 C 1.46496 * 126.18311 * 180.13568 * 20 19 18 22 22 C 1.35858 * 107.63934 * 0.41908 * 20 19 18 23 23 N 1.30183 * 109.11970 * 359.73482 * 22 20 19 24 24 H 1.08999 * 109.47302 * 60.00314 * 1 2 3 25 25 H 1.09008 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47440 * 299.99553 * 1 2 3 27 27 H 1.09006 * 109.46825 * 59.99896 * 3 2 1 28 28 H 1.09000 * 109.47111 * 300.00243 * 3 2 1 29 29 H 1.09000 * 109.47452 * 304.99870 * 4 3 2 30 30 H 1.09003 * 109.47029 * 185.00411 * 4 3 2 31 31 H 0.96999 * 119.99755 * 179.97438 * 9 8 6 32 32 H 1.07999 * 119.99657 * 7.96278 * 16 14 5 33 33 H 1.07995 * 120.00189 * 202.36496 * 17 16 14 34 34 H 1.08004 * 126.64678 * 359.96386 * 19 18 17 35 35 H 1.09005 * 109.47137 * 270.31175 * 21 20 19 36 36 H 1.09002 * 109.47159 * 30.30656 * 21 20 19 37 37 H 1.08993 * 109.47544 * 150.31481 * 21 20 19 38 38 H 1.08003 * 125.43794 * 179.70754 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1426 -0.7921 -1.3206 7 1 3.7959 -1.3347 -2.1876 8 6 4.7576 -1.4719 -0.2750 9 7 5.4205 -0.8049 0.6423 10 14 4.6413 -3.3335 -0.1749 11 1 5.7796 -3.9409 -0.9102 12 1 4.6888 -3.7566 1.2478 13 1 3.3630 -3.7831 -0.7826 14 6 4.2191 1.3291 -2.3336 15 8 3.9642 2.5199 -2.3074 16 6 4.7646 0.7476 -3.5034 17 6 5.1580 1.5359 -4.5306 18 6 5.4885 2.9451 -4.2892 19 6 5.7843 3.8812 -5.2418 20 7 6.0228 5.0478 -4.5834 21 6 6.3764 6.3304 -5.1966 22 6 5.8800 4.8069 -3.2540 23 7 5.5623 3.5566 -3.0789 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0903 31 1 5.8493 -1.2791 1.3718 32 1 4.8668 -0.3251 -3.5760 33 1 5.2288 1.1279 -5.5280 34 1 5.8196 3.7250 -6.3099 35 1 7.4604 6.4040 -5.2857 36 1 5.9253 6.3964 -6.1867 37 1 6.0070 7.1450 -4.5739 38 1 6.0098 5.5360 -2.4679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822287609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:22 Heat of formation + Delta-G solvation = 27.349138 kcal Electronic energy + Delta-G solvation = -22130.539952 eV Core-core repulsion = 18783.255736 eV Total energy + Delta-G solvation = -3347.284216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.55018 -40.33210 -38.52670 -36.50024 -35.02343 -33.43077 -33.29348 -31.03542 -29.82266 -27.52009 -27.22110 -26.42548 -24.82069 -22.97873 -21.80223 -21.29803 -20.05606 -18.44815 -18.00575 -17.18750 -17.01589 -16.87918 -16.35730 -16.10906 -15.93091 -15.58385 -15.31591 -14.89921 -14.43467 -14.36936 -13.72551 -13.64599 -13.56031 -13.35728 -13.14996 -13.06746 -12.79882 -12.62714 -12.46660 -12.28636 -12.01836 -11.71411 -10.87515 -10.85878 -10.50681 -10.42326 -10.27662 -9.60413 -8.96917 -8.53155 -8.06959 -5.85332 0.26978 1.44608 1.50108 1.52861 1.63077 2.14128 2.43547 2.77537 2.99651 3.04366 3.38020 3.49259 3.90171 4.05165 4.19431 4.29207 4.39290 4.48418 4.52725 4.53811 4.55742 4.59545 4.70424 4.76751 4.77973 4.83585 4.95479 5.13410 5.44370 5.45852 5.59354 5.61672 5.77794 6.13537 6.27589 6.46438 6.51565 6.66534 7.37221 7.53350 7.94650 8.40023 8.94499 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.005288 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.098694 B = 5293.677479 C = 6000.827428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.069 3.931 4 C 0.124 3.876 5 N -0.452 5.452 6 C -0.317 4.317 7 H 0.080 0.920 8 C -0.001 4.001 9 N -0.906 5.906 10 Si 0.980 3.020 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.487 3.513 15 O -0.577 6.577 16 C -0.209 4.209 17 C -0.012 4.012 18 C -0.037 4.037 19 C -0.009 4.009 20 N -0.467 5.467 21 C 0.069 3.931 22 C 0.137 3.863 23 N -0.452 5.452 24 H 0.036 0.964 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.265 0.735 32 H 0.128 0.872 33 H 0.173 0.827 34 H 0.217 0.783 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 9.494 -10.971 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.008 4.008 4 C -0.001 4.001 5 N -0.172 5.172 6 C -0.446 4.446 7 H 0.098 0.902 8 C -0.202 4.202 9 N -0.545 5.545 10 Si 0.804 3.196 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.280 3.720 15 O -0.461 6.461 16 C -0.231 4.231 17 C -0.034 4.034 18 C -0.164 4.164 19 C -0.146 4.146 20 N -0.150 5.150 21 C -0.071 4.071 22 C -0.146 4.146 23 N -0.169 5.169 24 H 0.055 0.945 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.190 0.810 34 H 0.234 0.766 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.894 9.652 -10.028 13.947 hybrid contribution -0.128 -0.285 0.008 0.312 sum -1.021 9.367 -10.020 13.755 Atomic orbital electron populations 1.22880 0.80850 1.03293 1.00079 1.88075 1.20312 1.27878 1.95246 1.22780 0.95006 0.84346 0.98706 1.21154 0.90853 0.96981 0.91091 1.43364 1.58422 1.06453 1.08934 1.19343 1.36591 0.82222 1.06431 0.90212 1.26170 0.93823 1.03798 0.96418 1.69975 1.32293 1.37733 1.14538 0.85147 0.78762 0.78412 0.77247 1.19732 1.21077 1.18942 1.17742 0.82310 0.86007 0.85949 1.90674 1.55751 1.15247 1.84470 1.22160 1.04648 1.00791 0.95469 1.21895 0.93510 0.89532 0.98422 1.19999 1.11169 0.95772 0.89435 1.23266 1.06528 0.85254 0.99580 1.45748 1.51579 1.10562 1.07127 1.22323 1.02929 0.81388 1.00488 1.25747 1.06815 0.96267 0.85730 1.71310 1.12974 1.05731 1.26896 0.94489 0.88720 0.93041 0.92213 0.95543 0.89630 0.93452 0.92592 0.85395 0.80969 0.76625 0.89309 0.87889 0.88395 0.76977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -18.35 10.28 -148.98 -1.53 -19.88 16 3 C 0.07 3.23 6.27 71.98 0.45 3.68 16 4 C 0.12 6.74 5.30 86.38 0.46 7.20 16 5 N -0.45 -25.66 2.45 -645.64 -1.58 -27.24 16 6 C -0.32 -17.89 7.79 84.11 0.66 -17.23 16 7 H 0.08 4.36 7.11 -2.91 -0.02 4.34 16 8 C 0.00 -0.08 5.07 84.96 0.43 0.35 16 9 N -0.91 -53.22 11.41 21.68 0.25 -52.97 16 10 Si 0.98 43.93 29.58 68.60 2.03 45.96 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 C 0.49 26.88 6.98 85.06 0.59 27.47 16 15 O -0.58 -33.09 11.88 -4.69 -0.06 -33.14 16 16 C -0.21 -9.85 9.15 22.42 0.21 -9.65 16 17 C -0.01 -0.47 10.08 23.82 0.24 -0.23 16 18 C -0.04 -1.47 6.20 40.42 0.25 -1.22 16 19 C -0.01 -0.26 11.53 83.70 0.97 0.70 16 20 N -0.47 -11.78 3.15 -550.85 -1.73 -13.51 16 21 C 0.07 0.84 11.16 127.77 1.43 2.26 16 22 C 0.14 4.69 12.55 180.09 2.26 6.96 16 23 N -0.45 -20.60 7.20 -189.03 -1.36 -21.96 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 5.00 5.64 -2.39 -0.01 4.99 16 30 H 0.05 2.67 7.59 -2.39 -0.02 2.65 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.13 5.84 6.58 -2.91 -0.02 5.82 16 33 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.22 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.21 5.88 8.06 -2.91 -0.02 5.85 16 Total: -1.00 -83.10 324.90 6.25 -76.85 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 1.05 Total: 23.52 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 9.18 Total: 22.38 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.43 Total: -115.68 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -1.59 Total: -53.02 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -83.10 6.25 -76.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822287609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.202 kcal (2) G-P(sol) polarization free energy of solvation -83.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds