Wall clock time and date at job start Tue Mar 31 2020 01:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 O 1.45196 * 109.47193 * 89.97965 * 10 9 8 12 12 C 1.34230 * 117.00059 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00075 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99820 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46851 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46851 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99936 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99734 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00106 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99850 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47379 * 89.99794 * 20 18 16 22 22 H 1.48498 * 109.47122 * 209.99893 * 20 18 16 23 23 H 1.48506 * 109.46949 * 329.99940 * 20 18 16 24 24 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 25 25 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 26 26 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 27 27 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 28 28 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 29 29 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 30 30 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 31 31 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 32 32 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 33 33 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 34 34 H 1.09000 * 109.46962 * 299.99999 * 14 12 11 35 35 H 1.08996 * 109.46787 * 59.99730 * 14 12 11 36 36 H 1.08992 * 109.47504 * 300.00049 * 15 14 12 37 37 H 1.09002 * 109.47009 * 60.00520 * 15 14 12 38 38 H 0.96998 * 120.00275 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 8 1.6819 -2.9789 1.3680 12 6 1.2876 -4.2499 1.5432 13 8 1.0694 -4.9523 0.5846 14 6 1.1182 -4.8012 2.9355 15 6 0.6658 -6.2605 2.8546 16 6 0.4970 -6.8120 4.2470 17 1 0.6925 -6.1843 5.1038 18 6 0.0931 -8.1180 4.4269 19 7 -0.1443 -8.8825 3.3835 20 14 -0.1168 -8.8014 6.1526 21 1 -1.5099 -8.5686 6.6112 22 1 0.1648 -10.2594 6.1453 23 1 0.8279 -8.1193 7.0734 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 5.6667 1.0633 0.4268 28 1 3.5866 3.4088 0.3420 29 1 5.3748 3.5597 0.7680 30 1 5.9961 2.6559 -1.5198 31 1 4.2084 2.5044 -1.9462 32 1 0.8667 -2.5989 -0.5141 33 1 2.5669 -3.1257 -0.5152 34 1 2.0683 -4.7446 3.4668 35 1 0.3684 -4.2169 3.4689 36 1 -0.2841 -6.3176 2.3233 37 1 1.4161 -6.8445 2.3215 38 1 -0.4289 -9.8011 3.5101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829198951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:43 Heat of formation + Delta-G solvation = 20.968856 kcal Electronic energy + Delta-G solvation = -20602.534877 eV Core-core repulsion = 17254.973991 eV Total energy + Delta-G solvation = -3347.560886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.42865 -40.10826 -37.54958 -36.38078 -34.13647 -33.65117 -32.17298 -31.16096 -28.44089 -27.28341 -25.77770 -24.01321 -22.70388 -22.36701 -20.87521 -20.15191 -19.97561 -17.56674 -17.38810 -16.55392 -16.28752 -16.12335 -15.82632 -15.53752 -14.80704 -14.49628 -14.09583 -13.79974 -13.56954 -13.41100 -12.62480 -12.46208 -12.35635 -12.29748 -11.99218 -11.78801 -11.27758 -11.19035 -10.99499 -10.84766 -10.67913 -10.67582 -10.21341 -10.15820 -10.11134 -9.94619 -9.66339 -9.44264 -9.22437 -8.41621 -6.05416 -4.10498 1.14014 1.95637 2.35781 2.65324 3.09057 3.29367 3.35984 3.38916 3.55858 3.72730 4.10267 4.24916 4.41687 4.54573 4.66343 4.71172 4.81191 4.86747 5.02270 5.12371 5.30257 5.30419 5.32352 5.45326 5.49358 5.77983 5.83070 6.03086 6.03975 6.11187 6.15644 6.41904 6.49166 6.77977 7.61247 7.67128 7.86169 7.93056 8.11304 8.31002 8.96339 9.53909 11.05539 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035390 B = 0.002711 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.986081 B =10325.074373 C =10540.077236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.367 5.367 3 N -0.310 5.310 4 C 0.253 3.747 5 C -0.071 4.071 6 C -0.160 4.160 7 C -0.159 4.159 8 N -0.516 5.516 9 C 0.283 3.717 10 C 0.144 3.856 11 O -0.360 6.360 12 C 0.461 3.539 13 O -0.499 6.499 14 C -0.101 4.101 15 C 0.033 3.967 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 22.220 -8.284 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.159 5.159 3 N -0.139 5.139 4 C -0.028 4.028 5 C -0.092 4.092 6 C -0.198 4.198 7 C -0.198 4.198 8 N -0.245 5.245 9 C 0.006 3.994 10 C 0.067 3.933 11 O -0.277 6.277 12 C 0.305 3.695 13 O -0.385 6.385 14 C -0.139 4.139 15 C -0.004 4.004 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.745 22.331 -8.647 24.412 hybrid contribution -0.467 -0.683 0.735 1.107 sum 4.278 21.648 -7.912 23.442 Atomic orbital electron populations 1.22078 0.73254 1.05624 1.04108 1.50226 1.08143 1.03677 1.53843 1.77948 1.01352 1.07426 1.27200 1.23128 0.92503 0.89123 0.98088 1.20072 0.93383 0.89864 1.05833 1.23052 1.03826 0.93611 0.99324 1.23044 1.03252 1.01715 0.91754 1.70276 1.19422 1.10914 1.23842 1.23699 0.86110 0.91612 0.97987 1.20956 1.02972 0.85425 0.83950 1.86641 1.80120 1.32238 1.28743 1.24920 0.72086 0.77918 0.94607 1.90661 1.46213 1.58420 1.43202 1.21823 1.03991 1.01030 0.87040 1.19041 0.97722 0.86014 0.97640 1.21138 1.46688 0.96985 0.91952 0.92281 1.25015 0.95260 0.97003 0.97016 1.69982 1.45748 1.07688 1.29314 0.86536 0.78473 0.78227 0.84413 1.20602 1.21152 1.19767 0.89839 0.88451 0.88500 0.84941 0.87862 0.87770 0.87678 0.88600 0.88879 0.87335 0.88643 0.88824 0.95529 0.95429 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.16 59.85 0.67 1.38 16 2 N -0.37 -4.54 4.04 -65.09 -0.26 -4.81 16 3 N -0.31 -4.17 12.24 32.42 0.40 -3.77 16 4 C 0.25 3.44 7.69 -156.85 -1.21 2.23 16 5 C -0.07 -0.71 6.33 -91.77 -0.58 -1.29 16 6 C -0.16 -1.26 10.14 -26.69 -0.27 -1.53 16 7 C -0.16 -1.24 10.24 -26.70 -0.27 -1.51 16 8 N -0.52 -7.85 11.19 -8.16 -0.09 -7.95 16 9 C 0.28 3.92 7.62 -155.70 -1.19 2.73 16 10 C 0.14 1.91 5.58 36.01 0.20 2.12 16 11 O -0.36 -5.75 10.20 -39.26 -0.40 -6.15 16 12 C 0.46 8.56 7.96 36.01 0.29 8.85 16 13 O -0.50 -10.59 15.73 -18.75 -0.29 -10.88 16 14 C -0.10 -1.99 5.75 -27.88 -0.16 -2.15 16 15 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 16 C -0.53 -14.51 9.11 -34.44 -0.31 -14.82 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.10 0.69 7.72 -51.93 -0.40 0.29 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.10 0.90 7.88 -51.93 -0.41 0.50 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.03 7.75 -51.93 -0.40 0.62 16 33 H 0.11 1.44 8.13 -51.93 -0.42 1.02 16 34 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.03 0.77 8.10 -51.93 -0.42 0.34 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -34.22 337.70 -8.30 -42.52 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.40 Total: -2.68 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -3.05 Total: -1.70 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.78 Total: -42.36 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.70 Total: -17.03 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.22 -8.30 -42.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829198951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.487 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds