Wall clock time and date at job start Tue Mar 31 2020 01:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 O 1.45196 * 109.47193 * 89.97965 * 10 9 8 12 12 C 1.34230 * 117.00059 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00075 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99820 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46851 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46851 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99936 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99734 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00106 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99850 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47379 * 89.99794 * 20 18 16 22 22 H 1.48498 * 109.47122 * 209.99893 * 20 18 16 23 23 H 1.48506 * 109.46949 * 329.99940 * 20 18 16 24 24 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 25 25 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 26 26 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 27 27 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 28 28 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 29 29 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 30 30 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 31 31 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 32 32 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 33 33 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 34 34 H 1.09000 * 109.46962 * 299.99999 * 14 12 11 35 35 H 1.08996 * 109.46787 * 59.99730 * 14 12 11 36 36 H 1.08992 * 109.47504 * 300.00049 * 15 14 12 37 37 H 1.09002 * 109.47009 * 60.00520 * 15 14 12 38 38 H 0.96998 * 120.00275 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 8 1.6819 -2.9789 1.3680 12 6 1.2876 -4.2499 1.5432 13 8 1.0694 -4.9523 0.5846 14 6 1.1182 -4.8012 2.9355 15 6 0.6658 -6.2605 2.8546 16 6 0.4970 -6.8120 4.2470 17 1 0.6925 -6.1843 5.1038 18 6 0.0931 -8.1180 4.4269 19 7 -0.1443 -8.8825 3.3835 20 14 -0.1168 -8.8014 6.1526 21 1 -1.5099 -8.5686 6.6112 22 1 0.1648 -10.2594 6.1453 23 1 0.8279 -8.1193 7.0734 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 5.6667 1.0633 0.4268 28 1 3.5866 3.4088 0.3420 29 1 5.3748 3.5597 0.7680 30 1 5.9961 2.6559 -1.5198 31 1 4.2084 2.5044 -1.9462 32 1 0.8667 -2.5989 -0.5141 33 1 2.5669 -3.1257 -0.5152 34 1 2.0683 -4.7446 3.4668 35 1 0.3684 -4.2169 3.4689 36 1 -0.2841 -6.3176 2.3233 37 1 1.4161 -6.8445 2.3215 38 1 -0.4289 -9.8011 3.5101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829198951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:43 Heat of formation + Delta-G solvation = 0.996871 kcal Electronic energy + Delta-G solvation = -20603.400927 eV Core-core repulsion = 17254.973991 eV Total energy + Delta-G solvation = -3348.426936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.41037 -41.56188 -38.30173 -37.75790 -35.65049 -35.00488 -33.41063 -32.89980 -29.51239 -28.34517 -27.48488 -24.82352 -24.19954 -23.29405 -21.89236 -21.58090 -21.03721 -19.17356 -18.38908 -18.14959 -17.68056 -17.20215 -17.08901 -16.47559 -16.37407 -15.66911 -15.46247 -14.97224 -14.40236 -14.29172 -14.24482 -13.99054 -13.84320 -13.22046 -13.14093 -12.88730 -12.82924 -12.51251 -12.40500 -12.03084 -11.93921 -11.93117 -11.76793 -11.53673 -11.48677 -11.29759 -11.20462 -10.97247 -10.56626 -10.32661 -8.19409 -6.32538 0.10688 1.05839 1.16222 1.34279 1.44708 1.46034 1.57172 1.92360 2.43390 2.65615 2.95526 3.14801 3.23551 3.35383 3.76425 3.85260 3.92137 4.04830 4.14091 4.20884 4.26921 4.42461 4.45034 4.45521 4.55401 4.75425 4.87494 4.89182 5.08171 5.12410 5.20802 5.22947 5.25639 5.48281 5.55000 5.56984 5.81709 6.13904 6.69331 6.85872 6.86835 7.37595 8.92999 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035390 B = 0.002711 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.986081 B =10325.074373 C =10540.077236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.364 5.364 3 N -0.322 5.322 4 C 0.242 3.758 5 C -0.097 4.097 6 C -0.148 4.148 7 C -0.146 4.146 8 N -0.547 5.547 9 C 0.270 3.730 10 C 0.145 3.855 11 O -0.354 6.354 12 C 0.475 3.525 13 O -0.531 6.531 14 C -0.093 4.093 15 C 0.038 3.962 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.258 1.258 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.138 0.862 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.119 0.881 36 H -0.004 1.004 37 H -0.008 1.008 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 23.984 -7.175 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.155 5.155 3 N -0.152 5.152 4 C -0.039 4.039 5 C -0.118 4.118 6 C -0.185 4.185 7 C -0.184 4.184 8 N -0.277 5.277 9 C -0.006 4.006 10 C 0.069 3.931 11 O -0.270 6.270 12 C 0.319 3.681 13 O -0.420 6.420 14 C -0.130 4.130 15 C 0.001 3.999 16 C -0.582 4.582 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.182 1.182 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.128 0.872 27 H 0.156 0.844 28 H 0.111 0.889 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.014 0.986 37 H 0.010 0.990 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.885 24.141 -7.529 25.755 hybrid contribution -0.521 -1.140 0.313 1.292 sum 4.364 23.001 -7.216 24.498 Atomic orbital electron populations 1.22466 0.70864 1.06702 1.05960 1.50517 1.09463 1.02966 1.52580 1.77900 1.01572 1.08036 1.27663 1.23753 0.93595 0.88958 0.97596 1.20296 0.92479 0.90700 1.08301 1.23119 1.04016 0.91839 0.99556 1.23122 1.04295 0.99834 0.91194 1.70242 1.20512 1.12063 1.24872 1.23645 0.86338 0.91886 0.98765 1.21145 1.04362 0.85213 0.82400 1.86572 1.79368 1.30481 1.30622 1.24484 0.71448 0.78411 0.93708 1.90660 1.47794 1.59478 1.44041 1.21550 1.05467 0.97639 0.88383 1.18814 0.95226 0.89578 0.96296 1.21633 1.45950 0.97480 0.93093 0.90609 1.26047 0.94895 0.97587 1.01522 1.70138 1.47066 1.08125 1.32054 0.85356 0.78947 0.77203 0.78971 1.19668 1.21236 1.18196 0.87603 0.87586 0.87233 0.84418 0.88947 0.85401 0.85303 0.89542 0.86370 0.87510 0.86891 0.86290 0.98592 0.98982 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 11.16 127.77 1.43 2.52 16 2 N -0.36 -8.57 4.04 -359.86 -1.45 -10.02 16 3 N -0.32 -8.42 12.24 -51.33 -0.63 -9.05 16 4 C 0.24 6.48 7.69 138.63 1.07 7.54 16 5 C -0.10 -1.87 6.33 -11.54 -0.07 -1.94 16 6 C -0.15 -2.07 10.14 30.62 0.31 -1.76 16 7 C -0.15 -2.03 10.24 30.62 0.31 -1.72 16 8 N -0.55 -16.57 11.19 -179.72 -2.01 -18.58 16 9 C 0.27 7.30 7.62 138.23 1.05 8.36 16 10 C 0.14 3.73 5.58 71.24 0.40 4.13 16 11 O -0.35 -10.88 10.20 -51.41 -0.52 -11.40 16 12 C 0.47 17.37 7.96 71.24 0.57 17.93 16 13 O -0.53 -22.78 15.73 21.97 0.35 -22.43 16 14 C -0.09 -3.57 5.75 29.85 0.17 -3.40 16 15 C 0.04 1.99 4.26 29.85 0.13 2.12 16 16 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 17 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 20 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 25 H 0.11 1.28 7.72 -2.39 -0.02 1.26 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.09 1.51 7.88 -2.39 -0.02 1.49 16 29 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 2.44 7.75 -2.39 -0.02 2.42 16 33 H 0.11 2.81 8.13 -2.39 -0.02 2.79 16 34 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 35 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 36 H 0.00 -0.25 8.10 -2.39 -0.02 -0.27 16 37 H -0.01 -0.48 8.10 -2.39 -0.02 -0.50 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.02 337.70 5.15 -69.87 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.06 Total: 8.54 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.05 Total: 4.66 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -3.81 Total: -94.37 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.18 Total: -33.84 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -75.02 5.15 -69.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829198951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.863 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds