Wall clock time and date at job start Tue Mar 31 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 C 1.50702 * 109.46950 * 89.97979 * 10 9 8 12 12 O 1.20822 * 120.00230 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99861 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99990 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47190 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47194 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99983 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00164 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99991 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99700 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46731 * 90.00220 * 20 18 16 22 22 H 1.48503 * 109.47152 * 210.00034 * 20 18 16 23 23 H 1.48495 * 109.47208 * 330.00506 * 20 18 16 24 24 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 25 25 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 26 26 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 27 27 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 28 28 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 29 29 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 30 30 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 31 31 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 32 32 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 33 33 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 34 34 H 1.08993 * 109.47486 * 299.99872 * 14 13 11 35 35 H 1.09001 * 109.46896 * 60.00228 * 14 13 11 36 36 H 1.08993 * 109.47021 * 300.00426 * 15 14 13 37 37 H 1.09001 * 109.46796 * 60.00435 * 15 14 13 38 38 H 0.97005 * 119.99771 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 6 1.6765 -2.9964 1.4200 12 8 1.9098 -2.2472 2.3387 13 8 1.2865 -4.2572 1.6645 14 6 1.1658 -4.6516 3.0567 15 6 0.7134 -6.1111 3.1360 16 6 0.5875 -6.5202 4.5809 17 1 0.8076 -5.8101 5.3644 18 6 0.1913 -7.8010 4.9028 19 7 0.0809 -8.1578 6.1638 20 14 -0.1901 -9.0289 3.5477 21 1 1.0463 -9.7683 3.1875 22 1 -1.2194 -9.9877 4.0238 23 1 -0.7004 -8.3068 2.3547 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 5.6667 1.0633 0.4268 28 1 3.5866 3.4088 0.3420 29 1 5.3748 3.5597 0.7680 30 1 5.9961 2.6559 -1.5198 31 1 4.2084 2.5044 -1.9462 32 1 0.8667 -2.5989 -0.5141 33 1 2.5669 -3.1257 -0.5152 34 1 2.1315 -4.5428 3.5503 35 1 0.4311 -4.0165 3.5518 36 1 -0.2523 -6.2194 2.6426 37 1 1.4478 -6.7464 2.6408 38 1 -0.1982 -9.0588 6.3902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829913616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:41 Heat of formation + Delta-G solvation = 22.673524 kcal Electronic energy + Delta-G solvation = -20786.302285 eV Core-core repulsion = 17438.815319 eV Total energy + Delta-G solvation = -3347.486966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.39712 -40.12762 -37.50342 -36.39809 -34.12652 -33.40676 -32.88847 -30.86696 -29.30970 -27.56050 -25.27939 -23.97340 -22.67812 -22.06181 -20.72821 -20.40809 -19.91350 -17.80449 -17.29981 -16.82006 -16.34264 -16.15952 -15.89817 -15.47610 -14.90574 -14.28663 -14.24566 -13.92041 -13.53704 -13.47587 -13.09517 -12.63709 -12.49160 -12.36069 -11.94447 -11.75815 -11.56043 -11.36162 -11.14754 -10.79397 -10.76706 -10.71188 -10.16608 -10.13036 -9.99945 -9.83841 -9.78881 -9.40894 -9.37284 -8.66411 -6.16671 -4.18475 1.28758 2.03234 2.28978 2.45996 3.04346 3.24953 3.32425 3.35566 3.55785 3.72164 4.10567 4.20640 4.34725 4.58366 4.66930 4.70257 4.81047 4.90405 4.94081 5.04727 5.14220 5.16686 5.31406 5.35415 5.53259 5.81685 5.86134 5.87564 5.89711 6.10582 6.24370 6.36981 6.52201 6.65940 7.10203 7.15133 7.57147 7.93048 7.93574 8.35202 8.84734 9.42384 10.95839 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038191 B = 0.002880 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.984513 B = 9718.620406 C = 9902.532661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.371 5.371 3 N -0.312 5.312 4 C 0.255 3.745 5 C -0.070 4.070 6 C -0.161 4.161 7 C -0.159 4.159 8 N -0.523 5.523 9 C 0.296 3.704 10 C -0.039 4.039 11 C 0.461 3.539 12 O -0.501 6.501 13 O -0.356 6.356 14 C 0.083 3.917 15 C -0.009 4.009 16 C -0.529 4.529 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.882 3.118 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.025 0.975 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 18.112 -17.892 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.161 5.161 3 N -0.141 5.141 4 C -0.026 4.026 5 C -0.091 4.091 6 C -0.198 4.198 7 C -0.198 4.198 8 N -0.250 5.250 9 C 0.019 3.981 10 C -0.079 4.079 11 C 0.301 3.699 12 O -0.389 6.389 13 O -0.273 6.273 14 C 0.011 3.989 15 C -0.046 4.046 16 C -0.567 4.567 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.709 3.291 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.188 1.188 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.150 0.850 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.613 18.687 -17.442 25.816 hybrid contribution -0.508 -0.951 -0.291 1.117 sum 3.104 17.736 -17.733 25.272 Atomic orbital electron populations 1.22015 0.73589 1.05462 1.03827 1.50099 1.07905 1.03684 1.54411 1.77922 1.01314 1.07377 1.27467 1.23051 0.92447 0.89116 0.97980 1.20060 0.93460 0.89889 1.05677 1.23047 1.03815 0.93717 0.99269 1.23035 1.03157 1.01832 0.91738 1.70221 1.19284 1.10967 1.24497 1.23270 0.86261 0.91319 0.97240 1.19720 1.06207 0.87777 0.94243 1.22864 0.74465 0.81484 0.91092 1.90722 1.45531 1.56154 1.46506 1.86464 1.77560 1.28498 1.34748 1.23459 1.01712 0.98697 0.75028 1.19634 0.97144 0.89091 0.98753 1.20827 1.47407 0.98550 0.89931 0.90665 1.24942 0.94466 0.98062 0.95543 1.69895 1.47033 1.19636 1.16822 0.86740 0.78632 0.81164 0.82592 1.20001 1.21167 1.18753 0.89829 0.88962 0.88598 0.85043 0.87874 0.87815 0.87746 0.88628 0.85422 0.83827 0.91473 0.91600 0.95335 0.95665 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.16 59.85 0.67 1.41 16 2 N -0.37 -4.68 4.04 -65.09 -0.26 -4.94 16 3 N -0.31 -4.41 12.24 32.42 0.40 -4.01 16 4 C 0.26 3.63 7.69 -156.85 -1.21 2.43 16 5 C -0.07 -0.75 6.33 -91.77 -0.58 -1.34 16 6 C -0.16 -1.38 10.14 -26.69 -0.27 -1.65 16 7 C -0.16 -1.29 10.24 -26.70 -0.27 -1.57 16 8 N -0.52 -8.04 11.19 -8.16 -0.09 -8.13 16 9 C 0.30 3.99 6.48 -155.70 -1.01 2.98 16 10 C -0.04 -0.42 5.94 -29.03 -0.17 -0.60 16 11 C 0.46 7.21 7.95 36.01 0.29 7.50 16 12 O -0.50 -9.69 15.78 -18.75 -0.30 -9.99 16 13 O -0.36 -6.21 10.22 -39.25 -0.40 -6.61 16 14 C 0.08 1.72 5.40 37.16 0.20 1.92 16 15 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 16 C -0.53 -14.79 9.66 -34.44 -0.33 -15.13 16 17 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 20 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.65 7.72 -51.93 -0.40 0.25 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.13 0.86 7.76 -51.93 -0.40 0.46 16 33 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 35 H 0.07 1.36 8.13 -51.93 -0.42 0.93 16 36 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 37 H 0.03 0.58 7.57 -51.93 -0.39 0.18 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 334.20 15.07 5.04 5.04 Total: -1.00 -35.57 334.20 -7.79 -43.36 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.37 Total: -2.33 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.91 Total: -2.40 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.82 Total: -43.36 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.70 Total: -16.60 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.57 -7.79 -43.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829913616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.033 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds