Wall clock time and date at job start Tue Mar 31 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 C 1.50702 * 109.46950 * 89.97979 * 10 9 8 12 12 O 1.20822 * 120.00230 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99861 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99990 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47190 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47194 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99983 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00164 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99991 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99700 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46731 * 90.00220 * 20 18 16 22 22 H 1.48503 * 109.47152 * 210.00034 * 20 18 16 23 23 H 1.48495 * 109.47208 * 330.00506 * 20 18 16 24 24 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 25 25 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 26 26 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 27 27 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 28 28 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 29 29 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 30 30 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 31 31 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 32 32 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 33 33 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 34 34 H 1.08993 * 109.47486 * 299.99872 * 14 13 11 35 35 H 1.09001 * 109.46896 * 60.00228 * 14 13 11 36 36 H 1.08993 * 109.47021 * 300.00426 * 15 14 13 37 37 H 1.09001 * 109.46796 * 60.00435 * 15 14 13 38 38 H 0.97005 * 119.99771 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 6 1.6765 -2.9964 1.4200 12 8 1.9098 -2.2472 2.3387 13 8 1.2865 -4.2572 1.6645 14 6 1.1658 -4.6516 3.0567 15 6 0.7134 -6.1111 3.1360 16 6 0.5875 -6.5202 4.5809 17 1 0.8076 -5.8101 5.3644 18 6 0.1913 -7.8010 4.9028 19 7 0.0809 -8.1578 6.1638 20 14 -0.1901 -9.0289 3.5477 21 1 1.0463 -9.7683 3.1875 22 1 -1.2194 -9.9877 4.0238 23 1 -0.7004 -8.3068 2.3547 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 5.6667 1.0633 0.4268 28 1 3.5866 3.4088 0.3420 29 1 5.3748 3.5597 0.7680 30 1 5.9961 2.6559 -1.5198 31 1 4.2084 2.5044 -1.9462 32 1 0.8667 -2.5989 -0.5141 33 1 2.5669 -3.1257 -0.5152 34 1 2.1315 -4.5428 3.5503 35 1 0.4311 -4.0165 3.5518 36 1 -0.2523 -6.2194 2.6426 37 1 1.4478 -6.7464 2.6408 38 1 -0.1982 -9.0588 6.3902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829913616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:40 Heat of formation + Delta-G solvation = 0.123165 kcal Electronic energy + Delta-G solvation = -20787.280142 eV Core-core repulsion = 17438.815319 eV Total energy + Delta-G solvation = -3348.464823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.35456 -41.48828 -38.27281 -37.81333 -35.40635 -34.97740 -33.93735 -32.75785 -30.34720 -28.36607 -27.12492 -24.80209 -23.50349 -23.24215 -22.49097 -21.41312 -20.86693 -19.34138 -18.55970 -18.19554 -17.72077 -17.44291 -16.84650 -16.36740 -16.24343 -15.74503 -15.53096 -14.96680 -14.81412 -14.41060 -14.27652 -14.16581 -13.59105 -13.21495 -13.15985 -13.12454 -12.78183 -12.49854 -12.46597 -12.40648 -11.93416 -11.80047 -11.65072 -11.52988 -11.49566 -11.46164 -11.13410 -10.86469 -10.80656 -10.25034 -8.33763 -6.42603 0.30464 1.04458 1.19267 1.40560 1.41958 1.43510 1.54701 1.90467 2.35698 2.69097 2.95847 3.01491 3.27141 3.38249 3.66884 3.85927 3.99755 4.04728 4.15937 4.17806 4.20982 4.30668 4.32499 4.50637 4.56249 4.61969 4.73797 4.88681 5.01765 5.09087 5.20710 5.22394 5.30193 5.30712 5.46501 5.52424 5.69209 6.15442 6.59055 6.64160 6.96008 7.22675 8.82443 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038191 B = 0.002880 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.984513 B = 9718.620406 C = 9902.532661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.372 5.372 3 N -0.333 5.333 4 C 0.240 3.760 5 C -0.098 4.098 6 C -0.153 4.153 7 C -0.139 4.139 8 N -0.557 5.557 9 C 0.283 3.717 10 C -0.026 4.026 11 C 0.464 3.536 12 O -0.543 6.543 13 O -0.348 6.348 14 C 0.095 3.905 15 C -0.003 4.003 16 C -0.544 4.544 17 H 0.031 0.969 18 C 0.009 3.991 19 N -0.947 5.947 20 Si 0.957 3.043 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.237 1.237 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 17.958 -21.090 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.162 5.162 3 N -0.162 5.162 4 C -0.041 4.041 5 C -0.119 4.119 6 C -0.191 4.191 7 C -0.178 4.178 8 N -0.285 5.285 9 C 0.006 3.994 10 C -0.065 4.065 11 C 0.307 3.693 12 O -0.433 6.433 13 O -0.264 6.264 14 C 0.021 3.979 15 C -0.040 4.040 16 C -0.582 4.582 17 H 0.050 0.950 18 C -0.189 4.189 19 N -0.586 5.586 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.160 1.160 24 H 0.134 0.866 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.195 0.805 33 H 0.187 0.813 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.173 18.560 -20.665 27.957 hybrid contribution -0.375 -0.787 0.773 1.165 sum 2.798 17.773 -19.892 26.822 Atomic orbital electron populations 1.22408 0.71213 1.06102 1.06131 1.50406 1.09259 1.03121 1.53419 1.77847 1.01633 1.08509 1.28211 1.23654 0.93455 0.89274 0.97695 1.20265 0.92609 0.90667 1.08355 1.23102 1.03828 0.92144 1.00010 1.23104 1.04310 0.99411 0.90957 1.70193 1.20787 1.11795 1.25728 1.23676 0.86169 0.92424 0.97084 1.19945 1.09508 0.86282 0.90808 1.23797 0.72634 0.80136 0.92777 1.90722 1.47308 1.56900 1.48360 1.86442 1.77978 1.29811 1.32207 1.22969 1.00641 0.97340 0.76901 1.19471 0.98126 0.90763 0.95681 1.21131 1.47262 0.98166 0.91662 0.95016 1.26007 0.94061 1.00428 0.98355 1.70054 1.48453 1.20518 1.19577 0.85567 0.78826 0.78141 0.79602 1.18928 1.20847 1.16033 0.86632 0.87897 0.88458 0.84852 0.89174 0.85683 0.85238 0.89284 0.80543 0.81343 0.92921 0.92277 0.93995 0.94520 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 11.16 127.77 1.43 2.54 16 2 N -0.37 -8.88 4.04 -359.86 -1.45 -10.33 16 3 N -0.33 -9.30 12.24 -51.33 -0.63 -9.93 16 4 C 0.24 6.83 7.69 138.63 1.07 7.90 16 5 C -0.10 -2.08 6.33 -11.54 -0.07 -2.16 16 6 C -0.15 -2.49 10.14 30.62 0.31 -2.18 16 7 C -0.14 -2.07 10.24 30.62 0.31 -1.76 16 8 N -0.56 -16.90 11.19 -179.72 -2.01 -18.91 16 9 C 0.28 7.21 6.48 138.23 0.90 8.11 16 10 C -0.03 -0.49 5.94 29.10 0.17 -0.31 16 11 C 0.46 13.71 7.95 71.24 0.57 14.28 16 12 O -0.54 -20.92 15.78 21.98 0.35 -20.57 16 13 O -0.35 -11.40 10.22 -51.38 -0.53 -11.92 16 14 C 0.09 3.88 5.40 71.98 0.39 4.26 16 15 C 0.00 -0.14 4.42 29.85 0.13 0.00 16 16 C -0.54 -30.97 9.66 25.60 0.25 -30.73 16 17 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 18 C 0.01 0.53 5.47 84.65 0.46 0.99 16 19 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 20 Si 0.96 42.16 27.47 68.60 1.88 44.05 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 24 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 1.18 7.72 -2.39 -0.02 1.16 16 26 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.09 1.71 7.88 -2.39 -0.02 1.69 16 29 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.18 1.51 7.76 -2.39 -0.02 1.49 16 33 H 0.17 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 35 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 36 H 0.04 1.80 7.20 -2.39 -0.02 1.78 16 37 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 38 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -80.24 334.20 4.83 -75.42 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.01 Total: 9.41 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.91 Total: 0.94 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -3.79 Total: -97.32 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.18 Total: -32.49 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.05 kcal Total: -80.24 4.83 -75.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829913616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.542 kcal (2) G-P(sol) polarization free energy of solvation -80.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds