Wall clock time and date at job start Tue Mar 31 2020 00:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98445 * 359.72680 * 4 3 2 6 6 C 1.38105 * 120.01857 * 179.72828 * 5 4 3 7 7 C 1.38859 * 119.98477 * 0.56528 * 6 5 4 8 8 N 1.39931 * 120.02350 * 179.68442 * 7 6 5 9 9 N 1.40100 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00455 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00504 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99903 * 359.97438 * 10 9 8 13 13 C 1.46493 * 119.99816 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47195 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00382 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99782 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47554 * 60.00498 * 18 16 14 20 20 H 1.48510 * 109.47040 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47473 * 299.99919 * 18 16 14 22 22 C 1.38869 * 119.95835 * 359.70587 * 7 6 5 23 23 C 1.38104 * 119.97993 * 359.97438 * 22 7 6 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07993 * 119.98781 * 359.97438 * 5 4 3 30 30 H 1.08007 * 120.00898 * 180.26980 * 6 5 4 31 31 H 0.97005 * 120.00541 * 180.02562 * 8 7 6 32 32 H 0.97005 * 119.99883 * 0.02562 * 9 8 7 33 33 H 0.96999 * 119.99476 * 0.02562 * 12 10 9 34 34 H 1.09004 * 109.47322 * 299.99892 * 13 12 10 35 35 H 1.08996 * 109.47712 * 59.99790 * 13 12 10 36 36 H 0.96997 * 119.99641 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00689 * 179.97438 * 22 7 6 38 38 H 1.08002 * 119.98723 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0068 6 6 5.5684 0.6055 0.0017 7 6 6.0995 1.8885 0.0021 8 7 7.4868 2.0719 0.0036 9 7 8.3403 0.9610 0.0041 10 6 9.6764 1.1376 0.0061 11 8 10.4172 0.1734 0.0060 12 7 10.1915 2.3831 0.0070 13 6 11.6438 2.5751 0.0086 14 6 11.9557 4.0495 0.0101 15 1 11.1523 4.7713 0.0095 16 6 13.2665 4.4770 0.0122 17 7 14.2448 3.5980 0.0125 18 14 13.6529 6.3045 0.0133 19 1 13.0687 6.9333 1.2251 20 1 15.1252 6.4992 0.0150 21 1 13.0723 6.9340 -1.1999 22 6 5.2532 2.9895 0.0016 23 6 3.8842 2.8075 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7859 -0.5724 0.0116 30 1 6.2259 -0.2513 0.0021 31 1 7.8576 2.9683 0.0043 32 1 7.9696 0.0646 0.0030 33 1 9.6006 3.1523 0.0067 34 1 12.0705 2.1130 0.8989 35 1 12.0724 2.1136 -0.8810 36 1 15.1669 3.8987 0.0136 37 1 5.6655 3.9877 0.0023 38 1 3.2258 3.6637 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838573340.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:45 Heat of formation + Delta-G solvation = -2.878354 kcal Electronic energy + Delta-G solvation = -20451.453774 eV Core-core repulsion = 17102.858796 eV Total energy + Delta-G solvation = -3348.594978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34407 -39.48581 -38.01971 -35.57126 -34.31134 -32.43772 -32.09614 -31.36673 -30.62188 -27.36606 -27.08696 -24.38168 -23.06518 -22.33004 -21.70051 -20.18817 -18.76408 -18.56426 -17.85669 -16.46123 -16.28662 -15.74672 -15.60941 -15.02174 -14.93310 -14.43563 -14.26916 -13.75464 -13.66591 -13.57986 -13.16037 -12.99454 -12.95921 -12.52368 -12.07834 -12.02918 -11.92437 -11.48937 -11.03681 -10.92489 -10.90471 -10.65107 -10.37741 -9.74260 -9.45369 -9.18219 -8.89516 -8.77215 -7.99231 -6.96021 -6.20013 -4.27466 1.18890 1.48267 2.20047 3.08087 3.23303 3.28190 3.29467 3.62989 3.77825 3.78601 4.31040 4.57261 4.60999 4.70819 4.77517 4.92219 5.06328 5.15195 5.16173 5.17612 5.32241 5.45278 5.64804 5.67929 5.82803 5.94330 6.20891 6.24559 6.44802 6.66842 7.08264 7.29198 7.32528 7.47425 7.48179 7.63268 7.86568 8.01937 8.66696 8.83010 9.10159 9.39220 10.90049 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034771 B = 0.002756 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.078850 B =10155.881107 C =10935.209352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.321 6.321 4 C 0.066 3.934 5 C -0.152 4.152 6 C -0.161 4.161 7 C 0.194 3.806 8 N -0.547 5.547 9 N -0.546 5.546 10 C 0.701 3.299 11 O -0.585 6.585 12 N -0.724 5.724 13 C 0.265 3.735 14 C -0.545 4.545 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.153 4.153 23 C -0.095 4.095 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.424 0.576 32 H 0.423 0.577 33 H 0.382 0.618 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.133 0.867 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.333 -3.971 -0.021 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.020 3.980 5 C -0.172 4.172 6 C -0.185 4.185 7 C 0.091 3.909 8 N -0.277 5.277 9 N -0.302 5.302 10 C 0.400 3.600 11 O -0.461 6.461 12 N -0.377 5.377 13 C 0.144 3.856 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.733 3.267 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 C -0.177 4.177 23 C -0.115 4.115 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.267 0.733 32 H 0.268 0.732 33 H 0.215 0.785 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.386 -4.577 -0.021 24.812 hybrid contribution 0.130 1.022 0.002 1.030 sum -24.256 -3.555 -0.019 24.516 Atomic orbital electron populations 1.21766 0.93022 1.02681 1.03419 1.22697 0.95630 0.82485 1.01158 1.86043 1.19116 1.28610 1.89805 1.18709 0.82165 0.93962 1.03194 1.20937 0.93309 0.97973 1.04951 1.20244 0.94799 0.95221 1.08243 1.17650 0.81400 0.94280 0.97553 1.43356 0.98904 1.01345 1.84144 1.44670 1.00558 1.01867 1.83071 1.15963 0.79727 0.85437 0.78857 1.90974 1.55148 1.40108 1.59833 1.45766 1.11179 1.04019 1.76784 1.19070 0.71964 0.96678 0.97919 1.21143 0.92556 0.90964 1.53687 0.92005 1.24943 0.95922 0.98471 0.94634 1.69962 0.99687 1.33912 1.48524 0.86447 0.77388 0.84214 0.78685 1.20051 1.21038 1.20054 1.20280 0.91939 0.97519 1.07944 1.20101 0.94040 0.94842 1.02475 0.90569 0.91605 0.91600 0.92309 0.92313 0.85611 0.86117 0.73307 0.73245 0.78450 0.95420 0.95415 0.92314 0.84898 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.44 16 2 C 0.06 0.40 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.32 10.14 -19.72 -0.20 -3.52 16 4 C 0.07 0.71 6.69 -39.24 -0.26 0.45 16 5 C -0.15 -1.56 9.03 -39.46 -0.36 -1.92 16 6 C -0.16 -1.80 9.48 -39.40 -0.37 -2.18 16 7 C 0.19 2.28 6.72 -83.70 -0.56 1.72 16 8 N -0.55 -7.05 6.46 32.44 0.21 -6.84 16 9 N -0.55 -8.40 6.22 27.64 0.17 -8.23 16 10 C 0.70 14.31 8.68 -86.91 -0.75 13.55 16 11 O -0.59 -14.36 17.18 5.29 0.09 -14.27 16 12 N -0.72 -15.18 5.51 -66.42 -0.37 -15.55 16 13 C 0.26 6.95 5.43 -5.20 -0.03 6.93 16 14 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 15 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.88 -25.75 13.29 55.43 0.74 -25.02 16 18 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.15 -1.58 9.89 -39.40 -0.39 -1.97 16 23 C -0.10 -0.98 9.98 -39.46 -0.39 -1.38 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 28 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 29 H 0.13 1.03 6.29 -52.49 -0.33 0.70 16 30 H 0.12 1.23 6.20 -52.48 -0.33 0.91 16 31 H 0.42 5.08 6.72 -182.59 -1.23 3.86 16 32 H 0.42 5.78 6.71 -182.59 -1.22 4.56 16 33 H 0.38 6.81 6.24 -40.82 -0.25 6.55 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -32.64 326.22 -9.06 -41.71 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.65 Total: 9.07 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.95 Total: 2.16 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.75 Total: -55.63 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.11 Total: -17.79 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.64 -9.06 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838573340.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.828 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds