Wall clock time and date at job start Tue Mar 31 2020 00:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35995 * 116.99762 * 179.97438 * 3 2 1 5 5 C 1.38706 * 119.98445 * 359.72680 * 4 3 2 6 6 C 1.38105 * 120.01857 * 179.72828 * 5 4 3 7 7 C 1.38859 * 119.98477 * 0.56528 * 6 5 4 8 8 N 1.39931 * 120.02350 * 179.68442 * 7 6 5 9 9 N 1.40100 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.34773 * 120.00455 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00504 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99903 * 359.97438 * 10 9 8 13 13 C 1.46493 * 119.99816 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47195 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99760 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00382 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99782 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47554 * 60.00498 * 18 16 14 20 20 H 1.48510 * 109.47040 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47473 * 299.99919 * 18 16 14 22 22 C 1.38869 * 119.95835 * 359.70587 * 7 6 5 23 23 C 1.38104 * 119.97993 * 359.97438 * 22 7 6 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07993 * 119.98781 * 359.97438 * 5 4 3 30 30 H 1.08007 * 120.00898 * 180.26980 * 6 5 4 31 31 H 0.97005 * 120.00541 * 180.02562 * 8 7 6 32 32 H 0.97005 * 119.99883 * 0.02562 * 9 8 7 33 33 H 0.96999 * 119.99476 * 0.02562 * 12 10 9 34 34 H 1.09004 * 109.47322 * 299.99892 * 13 12 10 35 35 H 1.08996 * 109.47712 * 59.99790 * 13 12 10 36 36 H 0.96997 * 119.99641 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.00689 * 179.97438 * 22 7 6 38 38 H 1.08002 * 119.98723 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3545 1.5256 0.0005 5 6 4.1991 0.4254 0.0068 6 6 5.5684 0.6055 0.0017 7 6 6.0995 1.8885 0.0021 8 7 7.4868 2.0719 0.0036 9 7 8.3403 0.9610 0.0041 10 6 9.6764 1.1376 0.0061 11 8 10.4172 0.1734 0.0060 12 7 10.1915 2.3831 0.0070 13 6 11.6438 2.5751 0.0086 14 6 11.9557 4.0495 0.0101 15 1 11.1523 4.7713 0.0095 16 6 13.2665 4.4770 0.0122 17 7 14.2448 3.5980 0.0125 18 14 13.6529 6.3045 0.0133 19 1 13.0687 6.9333 1.2251 20 1 15.1252 6.4992 0.0150 21 1 13.0723 6.9340 -1.1999 22 6 5.2532 2.9895 0.0016 23 6 3.8842 2.8075 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7859 -0.5724 0.0116 30 1 6.2259 -0.2513 0.0021 31 1 7.8576 2.9683 0.0043 32 1 7.9696 0.0646 0.0030 33 1 9.6006 3.1523 0.0067 34 1 12.0705 2.1130 0.8989 35 1 12.0724 2.1136 -0.8810 36 1 15.1669 3.8987 0.0136 37 1 5.6655 3.9877 0.0023 38 1 3.2258 3.6637 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838573340.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:44 Heat of formation + Delta-G solvation = -25.789338 kcal Electronic energy + Delta-G solvation = -20452.447269 eV Core-core repulsion = 17102.858796 eV Total energy + Delta-G solvation = -3349.588473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.37701 -40.79647 -38.98951 -36.75346 -36.23607 -34.30856 -32.94858 -32.25428 -31.51932 -29.18212 -28.22146 -25.24854 -24.74274 -23.32489 -22.51329 -21.78650 -20.25448 -19.49366 -18.82597 -18.23124 -17.12772 -16.92235 -16.69204 -16.64869 -16.50081 -16.01477 -15.16775 -14.99286 -14.69022 -14.45583 -14.32257 -14.15787 -14.03287 -13.63634 -13.61626 -13.13253 -12.93689 -12.68754 -12.54205 -12.35631 -12.24671 -11.64202 -11.56440 -11.49786 -11.48949 -10.80800 -10.17042 -9.97145 -9.70716 -8.28200 -7.97484 -6.44773 0.38214 0.61941 0.99654 1.45057 1.48859 1.56894 2.04621 2.20519 2.41220 2.46489 2.87592 3.07016 3.79390 3.86548 4.04422 4.11964 4.19462 4.31827 4.44221 4.46649 4.69571 4.82627 4.99611 5.00810 5.05194 5.10978 5.25064 5.25471 5.34726 5.39550 5.43621 5.44920 5.59695 5.75070 5.82693 6.29277 6.50215 6.62728 6.67714 7.22750 7.30354 7.51425 8.83663 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034771 B = 0.002756 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.078850 B =10155.881107 C =10935.209352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.335 6.335 4 C 0.061 3.939 5 C -0.157 4.157 6 C -0.169 4.169 7 C 0.175 3.825 8 N -0.547 5.547 9 N -0.525 5.525 10 C 0.701 3.299 11 O -0.633 6.633 12 N -0.717 5.717 13 C 0.282 3.718 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.986 3.014 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.262 1.262 22 C -0.146 4.146 23 C -0.104 4.104 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.428 0.572 32 H 0.434 0.566 33 H 0.400 0.600 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.269 0.731 37 H 0.153 0.847 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.600 -2.407 -0.021 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.015 3.985 5 C -0.176 4.176 6 C -0.193 4.193 7 C 0.074 3.926 8 N -0.281 5.281 9 N -0.279 5.279 10 C 0.400 3.600 11 O -0.512 6.512 12 N -0.372 5.372 13 C 0.159 3.841 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.567 5.567 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.169 4.169 23 C -0.123 4.123 24 H 0.115 0.885 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.162 0.838 30 H 0.144 0.856 31 H 0.272 0.728 32 H 0.280 0.720 33 H 0.237 0.763 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.078 0.922 37 H 0.171 0.829 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.781 -3.013 -0.021 26.950 hybrid contribution 0.622 0.446 0.001 0.766 sum -26.159 -2.566 -0.019 26.285 Atomic orbital electron populations 1.21793 0.91737 1.03955 1.03131 1.22969 0.96722 0.81303 1.01873 1.86041 1.18756 1.30533 1.89635 1.18965 0.82656 0.94399 1.02471 1.21133 0.92905 0.98936 1.04622 1.20435 0.95426 0.95348 1.08066 1.17836 0.80650 0.95109 0.99038 1.43335 0.98933 1.00343 1.85446 1.44179 0.99348 1.03416 1.80983 1.15940 0.80974 0.84448 0.78642 1.90939 1.57176 1.41360 1.61689 1.45299 1.09457 1.05186 1.77265 1.18516 0.74574 0.96529 0.94471 1.21538 0.93472 0.91179 1.53213 0.89720 1.26048 0.95717 1.03904 0.93861 1.70128 1.00223 1.36651 1.49698 0.85195 0.76951 0.77504 0.79483 1.18650 1.21234 1.18662 1.20516 0.91789 0.98097 1.06508 1.20372 0.94282 0.95402 1.02274 0.88532 0.91885 0.91880 0.91566 0.91564 0.83771 0.85631 0.72820 0.71999 0.76343 0.99122 0.99114 0.92220 0.82897 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.58 5.46 71.98 0.39 0.97 16 3 O -0.33 -6.34 10.14 -93.49 -0.95 -7.29 16 4 C 0.06 1.22 6.69 22.49 0.15 1.37 16 5 C -0.16 -2.93 9.03 22.35 0.20 -2.73 16 6 C -0.17 -3.52 9.48 22.39 0.21 -3.31 16 7 C 0.17 3.80 6.72 38.15 0.26 4.05 16 8 N -0.55 -13.30 6.46 -51.27 -0.33 -13.63 16 9 N -0.53 -15.84 6.22 -184.75 -1.15 -16.99 16 10 C 0.70 29.00 8.68 179.05 1.55 30.55 16 11 O -0.63 -32.11 17.18 -3.99 -0.07 -32.18 16 12 N -0.72 -30.34 5.51 -482.30 -2.66 -32.99 16 13 C 0.28 15.35 5.43 85.64 0.46 15.81 16 14 C -0.56 -29.66 9.28 25.60 0.24 -29.43 16 15 H 0.08 4.03 7.60 -2.91 -0.02 4.00 16 16 C 0.00 0.25 5.46 84.66 0.46 0.72 16 17 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 18 Si 0.99 41.61 29.54 68.60 2.03 43.63 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 C -0.15 -2.69 9.89 22.39 0.22 -2.47 16 23 C -0.10 -1.93 9.98 22.35 0.22 -1.70 16 24 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.73 7.67 -2.39 -0.02 0.71 16 28 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 29 H 0.14 2.05 6.29 -2.91 -0.02 2.03 16 30 H 0.13 2.40 6.20 -2.91 -0.02 2.38 16 31 H 0.43 9.51 6.72 -213.31 -1.43 8.08 16 32 H 0.43 11.55 6.71 -213.31 -1.43 10.12 16 33 H 0.40 13.88 6.24 -92.71 -0.58 13.30 16 34 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 35 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -71.77 326.22 -0.06 -71.83 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -2.33 Total: 29.44 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 5.12 Total: 13.24 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -3.85 Total: -118.68 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.02 Total: -39.46 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -71.77 -0.06 -71.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838573340.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.039 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds