Wall clock time and date at job start Tue Mar 31 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21320 * 119.99925 * 2 1 4 4 C 1.46644 * 120.00195 * 179.72648 * 2 1 3 5 5 C 1.40088 * 120.23137 * 354.38428 * 4 2 1 6 6 C 1.37808 * 119.87665 * 179.74223 * 5 4 2 7 7 F 1.35100 * 119.83132 * 180.24744 * 6 5 4 8 8 C 1.38880 * 120.33724 * 0.52946 * 6 5 4 9 9 C 1.37936 * 120.47327 * 359.72275 * 8 6 5 10 10 C 1.38939 * 120.11397 * 0.02562 * 9 8 6 11 11 N 1.38808 * 120.16618 * 179.97438 * 10 9 8 12 12 C 1.46506 * 120.00451 * 5.46210 * 11 10 9 13 13 C 1.53001 * 109.47296 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47262 * 300.00010 * 13 12 11 15 15 C 1.53002 * 109.46881 * 59.99471 * 13 12 11 16 16 C 1.50694 * 109.47283 * 179.97438 * 13 12 11 17 17 H 1.08001 * 119.99706 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00036 * 179.97438 * 16 13 12 19 19 N 1.31506 * 120.00171 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99820 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46948 * 60.00487 * 20 18 16 22 22 H 1.48502 * 109.47191 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47833 * 300.00600 * 20 18 16 24 24 H 1.09004 * 109.47310 * 270.27560 * 1 2 3 25 25 H 1.09004 * 109.47567 * 30.27417 * 1 2 3 26 26 H 1.09004 * 109.47285 * 150.27484 * 1 2 3 27 27 H 1.08006 * 120.05860 * 359.96904 * 5 4 2 28 28 H 1.08005 * 119.76363 * 179.70126 * 8 6 5 29 29 H 1.07994 * 119.94207 * 180.02562 * 9 8 6 30 30 H 0.97000 * 120.00135 * 185.45245 * 11 10 9 31 31 H 1.08997 * 109.46685 * 299.99170 * 12 11 10 32 32 H 1.08998 * 109.46974 * 59.99301 * 12 11 10 33 33 H 1.09000 * 109.47099 * 59.99374 * 14 13 12 34 34 H 1.08999 * 109.47378 * 180.02562 * 14 13 12 35 35 H 1.09003 * 109.46398 * 300.00273 * 14 13 12 36 36 H 1.08997 * 109.47407 * 60.00274 * 15 13 12 37 37 H 1.08998 * 109.47180 * 179.97438 * 15 13 12 38 38 H 1.08997 * 109.47574 * 299.99799 * 15 13 12 39 39 H 0.97001 * 120.00065 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2402 -1.2699 0.0061 5 6 1.5497 -2.4825 0.1303 6 6 2.2457 -3.6719 0.1298 7 9 1.5784 -4.8410 0.2446 8 6 3.6300 -3.6746 0.0177 9 6 4.3246 -2.4888 -0.1001 10 6 3.6418 -1.2787 -0.1070 11 7 4.3398 -0.0847 -0.2250 12 6 5.7853 -0.1015 -0.4626 13 6 6.3042 1.3351 -0.5524 14 6 5.6061 2.0583 -1.7059 15 6 6.0113 2.0660 0.7594 16 6 7.7911 1.3179 -0.7962 17 1 8.3138 0.3764 -0.8792 18 6 8.4842 2.5039 -0.9143 19 7 7.8476 3.6503 -0.8137 20 14 10.3275 2.4825 -1.2158 21 1 10.6127 1.7721 -2.4884 22 1 10.8311 3.8768 -1.3031 23 1 11.0044 1.7815 -0.0953 24 1 -0.3634 0.0049 1.0277 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3634 -0.8925 -0.5096 27 1 0.4736 -2.4853 0.2226 28 1 4.1665 -4.6120 0.0232 29 1 5.4009 -2.5009 -0.1871 30 1 3.8704 0.7609 -0.1502 31 1 6.2826 -0.6169 0.3590 32 1 5.9938 -0.6219 -1.3973 33 1 4.5306 2.0707 -1.5292 34 1 5.9760 3.0816 -1.7702 35 1 5.8147 1.5375 -2.6405 36 1 6.5086 1.5509 1.5813 37 1 6.3813 3.0893 0.6957 38 1 4.9358 2.0786 0.9362 39 1 8.3353 4.4847 -0.8964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865870104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:09 Heat of formation + Delta-G solvation = -60.620203 kcal Electronic energy + Delta-G solvation = -21864.399272 eV Core-core repulsion = 18493.380457 eV Total energy + Delta-G solvation = -3371.018814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.61164 -40.19361 -38.01591 -36.77625 -33.96152 -32.02169 -31.22719 -29.42350 -28.21565 -25.68826 -25.61169 -24.66503 -23.93314 -21.53309 -20.13690 -18.68388 -17.43270 -17.32380 -16.27482 -15.77841 -15.46472 -15.13479 -14.87321 -14.83384 -14.54642 -14.12330 -13.97860 -13.85184 -13.08702 -12.70602 -12.54580 -12.43507 -12.24882 -12.10040 -12.01799 -11.38410 -11.34055 -11.17381 -10.89897 -10.74163 -10.41867 -10.19883 -9.79024 -9.55045 -9.41457 -9.33909 -9.09381 -8.79615 -8.39835 -7.08364 -6.02721 -4.14570 0.72722 1.54834 2.45059 3.27343 3.32702 3.34458 3.81294 3.90604 4.11793 4.38425 4.50672 4.73008 4.92047 5.08661 5.23334 5.32622 5.37105 5.40990 5.64876 5.80197 5.93216 6.05856 6.07847 6.15249 6.28313 6.29108 6.45343 6.72538 6.87504 6.91072 7.01440 7.03708 7.30671 7.57226 7.57697 7.65510 7.68949 8.01040 8.11933 8.33292 8.40925 8.85290 9.51283 10.98410 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.004477 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.115398 B = 6252.187730 C = 7183.881955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.400 3.600 3 O -0.469 6.469 4 C -0.258 4.258 5 C -0.052 4.052 6 C -0.003 4.003 7 F -0.151 7.151 8 C -0.065 4.065 9 C -0.189 4.189 10 C 0.279 3.721 11 N -0.697 5.697 12 C 0.118 3.882 13 C 0.060 3.940 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.420 0.580 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.011 0.989 34 H 0.085 0.915 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.085 0.915 38 H 0.010 0.990 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.295 -10.586 1.672 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.282 3.718 3 O -0.346 6.346 4 C -0.265 4.265 5 C -0.071 4.071 6 C -0.025 4.025 7 F -0.130 7.130 8 C -0.085 4.085 9 C -0.212 4.212 10 C 0.161 3.839 11 N -0.328 5.328 12 C -0.005 4.005 13 C 0.059 3.941 14 C -0.190 4.190 15 C -0.190 4.190 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.135 4.135 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.270 0.730 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.104 0.896 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.104 0.896 38 H 0.029 0.971 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.738 -9.732 1.627 15.335 hybrid contribution 0.751 -0.133 -0.117 0.772 sum -10.987 -9.865 1.511 14.843 Atomic orbital electron populations 1.22172 0.93939 1.04683 1.04499 1.22132 0.91588 0.87184 0.70860 1.90301 1.70794 1.34464 1.39067 1.19554 0.92135 0.94572 1.20274 1.21019 0.99895 0.90057 0.96133 1.17133 0.90268 0.81144 1.13942 1.91439 1.80682 1.46184 1.94724 1.21064 0.92240 0.98998 0.96172 1.20664 1.00679 0.90105 1.09706 1.18263 0.89835 0.88029 0.87772 1.46351 1.09668 1.06775 1.69995 1.21969 0.77556 1.01866 0.99095 1.18292 0.95106 0.87557 0.93146 1.21828 0.95588 1.04118 0.97458 1.21826 0.96062 1.04141 0.96950 1.20906 0.91426 0.92608 1.49921 0.92565 1.24887 0.98240 0.95494 0.94838 1.69808 1.35408 0.97242 1.49613 0.86632 0.85409 0.77005 0.78770 1.20298 1.21288 1.20301 0.88694 0.89512 0.89725 0.84546 0.84884 0.84329 0.73028 0.92752 0.92752 0.97014 0.89608 0.95634 0.95598 0.89602 0.97072 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 9.64 36.00 0.35 -1.47 16 2 C 0.40 5.67 7.20 -30.92 -0.22 5.44 16 3 O -0.47 -8.45 14.39 5.52 0.08 -8.37 16 4 C -0.26 -3.70 5.88 -104.91 -0.62 -4.32 16 5 C -0.05 -0.62 9.29 -39.05 -0.36 -0.98 16 6 C 0.00 -0.04 7.28 -39.50 -0.29 -0.33 16 7 F -0.15 -1.93 17.26 2.25 0.04 -1.89 16 8 C -0.06 -0.81 10.00 -39.45 -0.39 -1.20 16 9 C -0.19 -2.71 9.30 -39.43 -0.37 -3.07 16 10 C 0.28 4.54 6.66 -83.54 -0.56 3.99 16 11 N -0.70 -13.11 4.99 -58.39 -0.29 -13.40 16 12 C 0.12 2.39 3.76 -4.04 -0.02 2.37 16 13 C 0.06 1.41 0.50 -155.66 -0.08 1.33 16 14 C -0.13 -3.17 8.08 37.16 0.30 -2.87 16 15 C -0.13 -3.16 8.08 37.16 0.30 -2.86 16 16 C -0.51 -13.19 8.01 -34.44 -0.28 -13.47 16 17 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 19 N -0.88 -23.88 9.35 55.43 0.52 -23.37 16 20 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.60 6.70 -51.93 -0.35 0.26 16 27 H 0.14 1.22 6.52 -52.48 -0.34 0.87 16 28 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.14 1.91 6.71 -52.49 -0.35 1.56 16 30 H 0.42 8.49 2.68 -40.95 -0.11 8.38 16 31 H 0.05 1.07 7.73 -51.93 -0.40 0.66 16 32 H 0.05 1.07 8.12 -51.93 -0.42 0.65 16 33 H 0.01 0.25 6.86 -51.93 -0.36 -0.10 16 34 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 38 H 0.01 0.24 6.86 -51.93 -0.36 -0.12 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 316.68 15.07 4.77 4.77 Total: -1.00 -27.93 316.68 -7.20 -35.13 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.97 Total: 7.39 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.32 Total: -15.76 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.23 Total: -36.77 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.93 -7.20 -35.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865870104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.495 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds