Wall clock time and date at job start Tue Mar 31 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21320 * 119.99925 * 2 1 4 4 C 1.46644 * 120.00195 * 179.72648 * 2 1 3 5 5 C 1.40088 * 120.23137 * 354.38428 * 4 2 1 6 6 C 1.37808 * 119.87665 * 179.74223 * 5 4 2 7 7 F 1.35100 * 119.83132 * 180.24744 * 6 5 4 8 8 C 1.38880 * 120.33724 * 0.52946 * 6 5 4 9 9 C 1.37936 * 120.47327 * 359.72275 * 8 6 5 10 10 C 1.38939 * 120.11397 * 0.02562 * 9 8 6 11 11 N 1.38808 * 120.16618 * 179.97438 * 10 9 8 12 12 C 1.46506 * 120.00451 * 5.46210 * 11 10 9 13 13 C 1.53001 * 109.47296 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47262 * 300.00010 * 13 12 11 15 15 C 1.53002 * 109.46881 * 59.99471 * 13 12 11 16 16 C 1.50694 * 109.47283 * 179.97438 * 13 12 11 17 17 H 1.08001 * 119.99706 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00036 * 179.97438 * 16 13 12 19 19 N 1.31506 * 120.00171 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99820 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46948 * 60.00487 * 20 18 16 22 22 H 1.48502 * 109.47191 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47833 * 300.00600 * 20 18 16 24 24 H 1.09004 * 109.47310 * 270.27560 * 1 2 3 25 25 H 1.09004 * 109.47567 * 30.27417 * 1 2 3 26 26 H 1.09004 * 109.47285 * 150.27484 * 1 2 3 27 27 H 1.08006 * 120.05860 * 359.96904 * 5 4 2 28 28 H 1.08005 * 119.76363 * 179.70126 * 8 6 5 29 29 H 1.07994 * 119.94207 * 180.02562 * 9 8 6 30 30 H 0.97000 * 120.00135 * 185.45245 * 11 10 9 31 31 H 1.08997 * 109.46685 * 299.99170 * 12 11 10 32 32 H 1.08998 * 109.46974 * 59.99301 * 12 11 10 33 33 H 1.09000 * 109.47099 * 59.99374 * 14 13 12 34 34 H 1.08999 * 109.47378 * 180.02562 * 14 13 12 35 35 H 1.09003 * 109.46398 * 300.00273 * 14 13 12 36 36 H 1.08997 * 109.47407 * 60.00274 * 15 13 12 37 37 H 1.08998 * 109.47180 * 179.97438 * 15 13 12 38 38 H 1.08997 * 109.47574 * 299.99799 * 15 13 12 39 39 H 0.97001 * 120.00065 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2402 -1.2699 0.0061 5 6 1.5497 -2.4825 0.1303 6 6 2.2457 -3.6719 0.1298 7 9 1.5784 -4.8410 0.2446 8 6 3.6300 -3.6746 0.0177 9 6 4.3246 -2.4888 -0.1001 10 6 3.6418 -1.2787 -0.1070 11 7 4.3398 -0.0847 -0.2250 12 6 5.7853 -0.1015 -0.4626 13 6 6.3042 1.3351 -0.5524 14 6 5.6061 2.0583 -1.7059 15 6 6.0113 2.0660 0.7594 16 6 7.7911 1.3179 -0.7962 17 1 8.3138 0.3764 -0.8792 18 6 8.4842 2.5039 -0.9143 19 7 7.8476 3.6503 -0.8137 20 14 10.3275 2.4825 -1.2158 21 1 10.6127 1.7721 -2.4884 22 1 10.8311 3.8768 -1.3031 23 1 11.0044 1.7815 -0.0953 24 1 -0.3634 0.0049 1.0277 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3634 -0.8925 -0.5096 27 1 0.4736 -2.4853 0.2226 28 1 4.1665 -4.6120 0.0232 29 1 5.4009 -2.5009 -0.1871 30 1 3.8704 0.7609 -0.1502 31 1 6.2826 -0.6169 0.3590 32 1 5.9938 -0.6219 -1.3973 33 1 4.5306 2.0707 -1.5292 34 1 5.9760 3.0816 -1.7702 35 1 5.8147 1.5375 -2.6405 36 1 6.5086 1.5509 1.5813 37 1 6.3813 3.0893 0.6957 38 1 4.9358 2.0786 0.9362 39 1 8.3353 4.4847 -0.8964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865870104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:09 Heat of formation + Delta-G solvation = -74.736096 kcal Electronic energy + Delta-G solvation = -21865.011383 eV Core-core repulsion = 18493.380457 eV Total energy + Delta-G solvation = -3371.630926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.62237 -41.33906 -39.23665 -38.34325 -35.50334 -33.10677 -33.00411 -30.31312 -29.50136 -27.65245 -27.47183 -26.27781 -25.00031 -22.72429 -21.26726 -20.39909 -18.68361 -18.44815 -17.71966 -17.33857 -16.64245 -16.49604 -16.17347 -15.92465 -15.63683 -15.47633 -15.35253 -15.21069 -14.69259 -14.15824 -13.89775 -13.73674 -13.48472 -13.15163 -13.10527 -12.97895 -12.95989 -12.66630 -12.61963 -12.34024 -12.31520 -12.13729 -11.57232 -11.21944 -10.82991 -10.79369 -10.55532 -10.39998 -10.12790 -8.33012 -8.02184 -6.20253 -0.32137 0.46432 1.40311 1.45269 1.45621 1.52652 2.41197 2.63916 2.74687 3.13277 3.21262 3.48973 3.74163 4.00976 4.19965 4.32220 4.35700 4.47728 4.54361 4.64171 4.68666 4.68993 4.83607 4.88433 5.00311 5.04387 5.06307 5.12086 5.15445 5.23579 5.28937 5.38394 5.58684 5.63899 5.84590 6.03434 6.14356 6.31378 6.41075 6.51092 6.85895 6.99187 7.48276 8.97199 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.004477 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.115398 B = 6252.187730 C = 7183.881955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.395 3.605 3 O -0.515 6.515 4 C -0.265 4.265 5 C -0.037 4.037 6 C -0.003 4.003 7 F -0.148 7.148 8 C -0.057 4.057 9 C -0.200 4.200 10 C 0.251 3.749 11 N -0.715 5.715 12 C 0.136 3.864 13 C 0.051 3.949 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.022 3.978 19 N -0.905 5.905 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.273 1.273 24 H 0.118 0.882 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.174 0.826 28 H 0.159 0.841 29 H 0.138 0.862 30 H 0.412 0.588 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.016 0.984 34 H 0.059 0.941 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.712 -12.792 1.832 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.280 3.720 3 O -0.396 6.396 4 C -0.272 4.272 5 C -0.057 4.057 6 C -0.024 4.024 7 F -0.127 7.127 8 C -0.076 4.076 9 C -0.223 4.223 10 C 0.137 3.863 11 N -0.349 5.349 12 C 0.012 3.988 13 C 0.051 3.949 14 C -0.176 4.176 15 C -0.176 4.176 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.177 4.177 19 N -0.544 5.544 20 Si 0.779 3.221 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.198 1.198 24 H 0.136 0.864 25 H 0.107 0.893 26 H 0.131 0.869 27 H 0.192 0.808 28 H 0.177 0.823 29 H 0.156 0.844 30 H 0.260 0.740 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.189 -11.999 1.791 17.921 hybrid contribution 1.062 0.433 -0.145 1.157 sum -12.127 -11.566 1.646 16.839 Atomic orbital electron populations 1.22215 0.89810 1.06202 1.06305 1.22900 0.93866 0.86260 0.68965 1.90290 1.72092 1.35892 1.41324 1.19824 0.91565 0.95845 1.19967 1.21316 1.01635 0.88646 0.94055 1.17283 0.90420 0.81483 1.13219 1.91460 1.80571 1.46004 1.94639 1.21315 0.92516 0.99314 0.94500 1.20730 1.00872 0.90180 1.10471 1.18643 0.90951 0.87680 0.89035 1.46132 1.08710 1.07448 1.72599 1.21547 0.78959 0.99173 0.99094 1.18312 0.94395 0.89716 0.92498 1.21645 0.95825 1.02479 0.97651 1.21645 0.96199 1.02506 0.97268 1.21241 0.92736 0.92681 1.49687 0.92436 1.25591 1.02013 0.95285 0.94832 1.69956 1.36614 0.97548 1.50269 0.85705 0.80901 0.76800 0.78729 1.19841 1.21374 1.19823 0.86431 0.89318 0.86923 0.80847 0.82350 0.84413 0.73988 0.92694 0.92882 0.96461 0.92173 0.95845 0.95741 0.92174 0.96485 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 9.64 71.23 0.69 -2.20 16 2 C 0.40 10.66 7.20 27.88 0.20 10.86 16 3 O -0.52 -18.77 14.39 -3.15 -0.05 -18.81 16 4 C -0.27 -7.14 5.88 -20.05 -0.12 -7.26 16 5 C -0.04 -0.77 9.29 22.62 0.21 -0.55 16 6 C 0.00 -0.06 7.28 22.32 0.16 0.10 16 7 F -0.15 -3.20 17.26 44.97 0.78 -2.43 16 8 C -0.06 -1.27 10.00 22.35 0.22 -1.05 16 9 C -0.20 -5.51 9.30 22.37 0.21 -5.30 16 10 C 0.25 8.04 6.66 38.79 0.26 8.30 16 11 N -0.72 -27.34 4.99 -338.64 -1.69 -29.03 16 12 C 0.14 5.58 3.76 86.38 0.33 5.91 16 13 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 14 C -0.12 -5.84 8.08 71.98 0.58 -5.26 16 15 C -0.12 -5.83 8.08 71.98 0.58 -5.25 16 16 C -0.53 -27.52 8.01 25.60 0.21 -27.31 16 17 H 0.06 2.93 7.74 -2.91 -0.02 2.90 16 18 C 0.02 1.18 5.15 84.66 0.44 1.62 16 19 N -0.91 -50.21 9.35 21.45 0.20 -50.01 16 20 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.11 1.08 6.70 -2.39 -0.02 1.06 16 27 H 0.17 2.18 6.52 -2.91 -0.02 2.16 16 28 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 29 H 0.14 3.74 6.71 -2.91 -0.02 3.72 16 30 H 0.41 17.10 2.68 -94.80 -0.25 16.85 16 31 H 0.05 2.19 7.73 -2.39 -0.02 2.17 16 32 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 33 H 0.02 0.79 6.86 -2.39 -0.02 0.77 16 34 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 38 H 0.02 0.77 6.86 -2.39 -0.02 0.76 16 39 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -61.56 316.68 6.02 -55.54 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.82 Total: 25.26 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 3.93 Total: -24.94 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.49 Total: -79.04 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -61.56 6.02 -55.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865870104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.193 kcal (2) G-P(sol) polarization free energy of solvation -61.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds