Wall clock time and date at job start Tue Mar 31 2020 00:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46926 * 2 1 4 4 C 1.46508 * 119.99859 * 269.99960 * 3 2 1 5 5 C 1.52996 * 109.47073 * 270.00076 * 4 3 2 6 6 O 1.42897 * 109.47102 * 64.99700 * 5 4 3 7 7 C 1.34770 * 120.00156 * 89.99922 * 3 2 1 8 8 O 1.21580 * 119.99821 * 180.02562 * 7 3 2 9 9 N 1.34777 * 120.00366 * 359.97438 * 7 3 2 10 10 C 1.39459 * 120.00441 * 185.00405 * 9 7 3 11 11 C 1.38634 * 119.65038 * 185.31820 * 10 9 7 12 12 C 1.40817 * 118.67649 * 179.72710 * 11 10 9 13 13 C 1.41550 * 120.99731 * 180.25589 * 12 11 10 14 14 H 1.07992 * 119.99851 * 153.79446 * 13 12 11 15 15 C 1.40030 * 119.99773 * 333.78591 * 13 12 11 16 16 N 1.30736 * 120.00311 * 350.09883 * 15 13 12 17 17 Si 1.86801 * 119.99529 * 170.09839 * 15 13 12 18 18 H 1.48492 * 109.47540 * 60.00276 * 17 15 13 19 19 H 1.48506 * 109.46860 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47022 * 299.99764 * 17 15 13 21 21 C 1.41162 * 118.00673 * 0.27592 * 12 11 10 22 22 C 1.36592 * 119.12218 * 359.97438 * 21 12 11 23 23 N 1.32070 * 121.26236 * 0.02562 * 22 21 12 24 24 H 1.08998 * 109.47479 * 60.00744 * 1 2 3 25 25 H 1.09006 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47142 * 299.99907 * 1 2 3 27 27 H 1.08997 * 109.47635 * 240.00060 * 2 1 3 28 28 H 1.08998 * 109.47479 * 119.99256 * 2 1 3 29 29 H 1.09006 * 109.46661 * 29.99859 * 4 3 2 30 30 H 1.08994 * 109.47145 * 149.99802 * 4 3 2 31 31 H 1.08997 * 109.47024 * 184.99708 * 5 4 3 32 32 H 1.08997 * 109.47136 * 304.99941 * 5 4 3 33 33 H 0.96708 * 114.00164 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99461 * 5.00715 * 9 7 3 35 35 H 1.08011 * 120.66095 * 359.97438 * 11 10 9 36 36 H 0.97005 * 119.99979 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.43783 * 179.97438 * 21 12 11 38 38 H 1.08007 * 119.36646 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8315 -1.7105 6 8 3.8943 0.4434 -1.9935 7 6 2.2429 2.0166 1.1671 8 8 2.6477 3.1631 1.1671 9 7 2.0178 1.3816 2.3344 10 6 2.1496 2.0704 3.5398 11 6 2.0252 1.3851 4.7385 12 6 2.1678 2.0998 5.9434 13 6 2.0557 1.4483 7.1950 14 1 2.5580 1.8529 8.0612 15 6 1.2935 0.2793 7.3101 16 7 0.5316 -0.1045 6.3194 17 14 1.3652 -0.7318 8.8792 18 1 0.9203 0.1008 10.0254 19 1 0.4736 -1.9122 8.7486 20 1 2.7593 -1.1882 9.1105 21 6 2.4254 3.4855 5.8656 22 6 2.5262 4.0750 4.6376 23 7 2.3869 3.3738 3.5272 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1385 31 1 3.9155 2.4162 -2.6065 32 1 4.3862 2.1343 -0.9132 33 1 4.7898 0.2175 -2.2804 34 1 1.7642 0.4453 2.3360 35 1 1.8270 0.3234 4.7480 36 1 0.0039 -0.9145 6.3989 37 1 2.5413 4.0718 6.7652 38 1 2.7237 5.1350 4.5735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871721206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:28 Heat of formation + Delta-G solvation = -34.067255 kcal Electronic energy + Delta-G solvation = -21873.253873 eV Core-core repulsion = 18523.306443 eV Total energy + Delta-G solvation = -3349.947431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05049 -38.24784 -36.91755 -35.30078 -34.33023 -33.70002 -31.09004 -30.47569 -29.16958 -27.75543 -25.95886 -23.27310 -23.21997 -21.87501 -21.02781 -19.17838 -18.07361 -17.58213 -17.20229 -16.32498 -15.56561 -15.26981 -14.77527 -14.46591 -14.15084 -14.02246 -13.79191 -13.53041 -13.34982 -12.96026 -12.71401 -12.54876 -12.19515 -12.03053 -11.80415 -11.40309 -11.38088 -11.18012 -11.00734 -10.87200 -10.26017 -10.12650 -10.08722 -9.70042 -9.45967 -9.34754 -8.39446 -7.93554 -7.68197 -6.97982 -6.70900 -4.60016 2.73384 2.84652 2.99846 3.02239 3.05388 3.27747 3.86191 3.88389 4.23255 4.30059 4.74169 5.02797 5.12512 5.17434 5.27343 5.38657 5.46656 5.72890 5.74807 5.81899 5.85126 5.92343 6.00258 6.27443 6.54445 6.66573 6.79495 6.87292 6.99022 7.17134 7.30080 7.46447 7.52678 7.53636 7.89673 8.12824 8.40162 8.50113 8.76169 8.79011 9.22305 9.76877 10.12595 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.004546 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.074151 B = 6158.082985 C = 6915.658187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 N -0.629 5.629 4 C 0.139 3.861 5 C 0.058 3.942 6 O -0.572 6.572 7 C 0.695 3.305 8 O -0.537 6.537 9 N -0.667 5.667 10 C 0.354 3.646 11 C -0.244 4.244 12 C 0.144 3.856 13 C -0.455 4.455 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.796 5.796 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.283 4.283 22 C 0.118 3.882 23 N -0.553 5.553 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.375 0.625 34 H 0.404 0.596 35 H 0.132 0.868 36 H 0.281 0.719 37 H 0.101 0.899 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -3.951 -12.197 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.368 5.368 4 C 0.015 3.985 5 C -0.021 4.021 6 O -0.377 6.377 7 C 0.396 3.604 8 O -0.409 6.409 9 N -0.316 5.316 10 C 0.128 3.872 11 C -0.269 4.269 12 C 0.135 3.865 13 C -0.487 4.487 14 H 0.099 0.901 15 C -0.142 4.142 16 N -0.422 5.422 17 Si 0.739 3.261 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.307 4.307 22 C -0.035 4.035 23 N -0.272 5.272 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.221 0.779 34 H 0.240 0.760 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.034 -2.857 -12.965 13.316 hybrid contribution 0.251 -1.437 1.358 1.993 sum 1.285 -4.294 -11.607 12.442 Atomic orbital electron populations 1.22253 0.96292 1.02057 1.02627 1.21457 0.93868 0.82879 1.03145 1.47179 1.70880 1.14283 1.04503 1.21265 0.94183 0.98702 0.84371 1.22726 0.98547 0.82029 0.98826 1.86457 1.35465 1.25553 1.90258 1.16056 0.79362 0.84808 0.80178 1.90980 1.49239 1.15567 1.85123 1.42739 1.71476 1.13819 1.03554 1.18007 0.96508 0.89432 0.83283 1.21619 1.14499 1.01003 0.89819 1.17566 0.85914 0.90169 0.92820 1.19547 1.26991 1.06773 0.95365 0.90127 1.25934 0.93154 0.96944 0.98174 1.69740 1.19051 1.21484 1.31907 0.86267 0.79255 0.79013 0.81589 1.18929 1.20283 1.18812 1.21680 1.16025 0.95748 0.97277 1.21471 0.96441 0.97780 0.87846 1.67189 1.23208 1.05832 1.30930 0.92522 0.91657 0.92149 0.89441 0.91343 0.90368 0.88481 0.93131 0.92960 0.77884 0.75959 0.85047 0.90812 0.88062 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.38 5.76 -4.04 -0.02 1.35 16 3 N -0.63 -9.69 2.44 -179.42 -0.44 -10.13 16 4 C 0.14 1.79 5.81 -4.04 -0.02 1.77 16 5 C 0.06 0.66 7.39 37.16 0.27 0.94 16 6 O -0.57 -6.11 12.48 -35.23 -0.44 -6.55 16 7 C 0.69 14.17 8.23 -86.92 -0.72 13.46 16 8 O -0.54 -12.98 14.21 5.29 0.08 -12.90 16 9 N -0.67 -14.00 5.27 -15.87 -0.08 -14.08 16 10 C 0.35 8.90 7.41 -154.68 -1.15 7.75 16 11 C -0.24 -6.32 8.62 -38.46 -0.33 -6.65 16 12 C 0.14 3.84 5.60 -106.55 -0.60 3.24 16 13 C -0.46 -11.83 9.14 -37.65 -0.34 -12.17 16 14 H 0.08 2.00 7.87 -52.49 -0.41 1.58 16 15 C 0.08 1.84 5.31 -17.35 -0.09 1.75 16 16 N -0.80 -19.73 10.70 55.55 0.59 -19.14 16 17 Si 0.91 18.09 29.57 -169.99 -5.03 13.07 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 C -0.28 -7.08 9.85 -39.07 -0.38 -7.47 16 22 C 0.12 2.92 11.10 -18.04 -0.20 2.72 16 23 N -0.55 -14.56 7.89 -12.76 -0.10 -14.66 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.00 7.11 -51.93 -0.37 0.63 16 28 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 29 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.10 1.36 7.42 -51.93 -0.39 0.97 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.37 2.46 9.12 45.56 0.42 2.87 16 34 H 0.40 7.30 6.39 -40.82 -0.26 7.04 16 35 H 0.13 3.39 6.11 -52.48 -0.32 3.07 16 36 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 37 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -32.73 321.85 -7.94 -40.67 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -4.17 Total: 13.80 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -3.20 Total: 5.06 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.03 Total: -58.01 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.36 Total: -19.45 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.73 -7.94 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871721206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.607 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds