Wall clock time and date at job start Tue Mar 31 2020 00:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46926 * 2 1 4 4 C 1.46508 * 119.99859 * 269.99960 * 3 2 1 5 5 C 1.52996 * 109.47073 * 270.00076 * 4 3 2 6 6 O 1.42897 * 109.47102 * 64.99700 * 5 4 3 7 7 C 1.34770 * 120.00156 * 89.99922 * 3 2 1 8 8 O 1.21580 * 119.99821 * 180.02562 * 7 3 2 9 9 N 1.34777 * 120.00366 * 359.97438 * 7 3 2 10 10 C 1.39459 * 120.00441 * 185.00405 * 9 7 3 11 11 C 1.38634 * 119.65038 * 185.31820 * 10 9 7 12 12 C 1.40817 * 118.67649 * 179.72710 * 11 10 9 13 13 C 1.41550 * 120.99731 * 180.25589 * 12 11 10 14 14 H 1.07992 * 119.99851 * 153.79446 * 13 12 11 15 15 C 1.40030 * 119.99773 * 333.78591 * 13 12 11 16 16 N 1.30736 * 120.00311 * 350.09883 * 15 13 12 17 17 Si 1.86801 * 119.99529 * 170.09839 * 15 13 12 18 18 H 1.48492 * 109.47540 * 60.00276 * 17 15 13 19 19 H 1.48506 * 109.46860 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47022 * 299.99764 * 17 15 13 21 21 C 1.41162 * 118.00673 * 0.27592 * 12 11 10 22 22 C 1.36592 * 119.12218 * 359.97438 * 21 12 11 23 23 N 1.32070 * 121.26236 * 0.02562 * 22 21 12 24 24 H 1.08998 * 109.47479 * 60.00744 * 1 2 3 25 25 H 1.09006 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47142 * 299.99907 * 1 2 3 27 27 H 1.08997 * 109.47635 * 240.00060 * 2 1 3 28 28 H 1.08998 * 109.47479 * 119.99256 * 2 1 3 29 29 H 1.09006 * 109.46661 * 29.99859 * 4 3 2 30 30 H 1.08994 * 109.47145 * 149.99802 * 4 3 2 31 31 H 1.08997 * 109.47024 * 184.99708 * 5 4 3 32 32 H 1.08997 * 109.47136 * 304.99941 * 5 4 3 33 33 H 0.96708 * 114.00164 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99461 * 5.00715 * 9 7 3 35 35 H 1.08011 * 120.66095 * 359.97438 * 11 10 9 36 36 H 0.97005 * 119.99979 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.43783 * 179.97438 * 21 12 11 38 38 H 1.08007 * 119.36646 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8315 -1.7105 6 8 3.8943 0.4434 -1.9935 7 6 2.2429 2.0166 1.1671 8 8 2.6477 3.1631 1.1671 9 7 2.0178 1.3816 2.3344 10 6 2.1496 2.0704 3.5398 11 6 2.0252 1.3851 4.7385 12 6 2.1678 2.0998 5.9434 13 6 2.0557 1.4483 7.1950 14 1 2.5580 1.8529 8.0612 15 6 1.2935 0.2793 7.3101 16 7 0.5316 -0.1045 6.3194 17 14 1.3652 -0.7318 8.8792 18 1 0.9203 0.1008 10.0254 19 1 0.4736 -1.9122 8.7486 20 1 2.7593 -1.1882 9.1105 21 6 2.4254 3.4855 5.8656 22 6 2.5262 4.0750 4.6376 23 7 2.3869 3.3738 3.5272 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1385 31 1 3.9155 2.4162 -2.6065 32 1 4.3862 2.1343 -0.9132 33 1 4.7898 0.2175 -2.2804 34 1 1.7642 0.4453 2.3360 35 1 1.8270 0.3234 4.7480 36 1 0.0039 -0.9145 6.3989 37 1 2.5413 4.0718 6.7652 38 1 2.7237 5.1350 4.5735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871721206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:27 Heat of formation + Delta-G solvation = -56.585369 kcal Electronic energy + Delta-G solvation = -21874.230332 eV Core-core repulsion = 18523.306443 eV Total energy + Delta-G solvation = -3350.923889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62034 -39.99786 -38.00782 -36.55398 -36.13572 -35.46966 -32.42176 -32.13726 -30.76433 -29.13760 -27.89845 -24.61782 -24.26400 -23.78666 -22.67428 -20.77581 -19.56198 -19.14844 -18.23962 -17.79566 -17.21145 -16.85441 -16.23076 -16.06254 -16.00015 -15.41203 -14.98423 -14.84416 -14.69599 -14.53962 -14.32741 -14.10700 -13.65832 -13.16516 -13.04028 -12.85818 -12.80860 -12.67188 -12.37338 -12.13986 -11.93791 -11.91107 -11.50272 -11.21936 -11.16844 -10.90122 -9.92490 -9.67835 -9.60845 -8.83466 -8.56326 -6.57318 0.83695 1.02383 1.42053 1.53487 1.59274 1.59817 2.21209 2.25791 2.83438 2.89079 3.41115 3.76727 3.97404 4.08598 4.15829 4.24108 4.38069 4.42055 4.53172 4.70223 4.78401 4.83788 4.86260 4.92297 4.93499 4.96782 5.10343 5.24995 5.31719 5.50131 5.60439 5.66985 5.84527 5.97096 6.24840 6.56302 6.79272 6.83145 6.87423 6.88994 7.58480 7.89466 8.30483 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.004546 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.074151 B = 6158.082985 C = 6915.658187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.108 3.892 3 N -0.618 5.618 4 C 0.130 3.870 5 C 0.067 3.933 6 O -0.580 6.580 7 C 0.690 3.310 8 O -0.580 6.580 9 N -0.662 5.662 10 C 0.350 3.650 11 C -0.261 4.261 12 C 0.115 3.885 13 C -0.484 4.484 14 H 0.084 0.916 15 C 0.037 3.963 16 N -0.818 5.818 17 Si 0.990 3.010 18 H -0.260 1.260 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.296 4.296 22 C 0.113 3.887 23 N -0.578 5.578 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.032 0.968 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.022 0.978 33 H 0.394 0.606 34 H 0.415 0.585 35 H 0.127 0.873 36 H 0.291 0.709 37 H 0.117 0.883 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.181 -5.556 -12.794 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.015 4.015 3 N -0.356 5.356 4 C 0.007 3.993 5 C -0.012 4.012 6 O -0.388 6.388 7 C 0.391 3.609 8 O -0.456 6.456 9 N -0.312 5.312 10 C 0.123 3.877 11 C -0.287 4.287 12 C 0.107 3.893 13 C -0.515 4.515 14 H 0.102 0.898 15 C -0.179 4.179 16 N -0.443 5.443 17 Si 0.811 3.189 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.320 4.320 22 C -0.040 4.040 23 N -0.298 5.298 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.051 0.949 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.040 0.960 33 H 0.243 0.757 34 H 0.254 0.746 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.730 -4.503 -13.629 14.372 hybrid contribution 0.327 -0.976 1.443 1.773 sum 1.057 -5.479 -12.186 13.403 Atomic orbital electron populations 1.22198 0.95267 1.03372 1.01705 1.21675 0.94605 0.81143 1.04043 1.47256 1.69498 1.15226 1.03650 1.21533 0.96132 0.97971 0.83644 1.22524 0.96587 0.82989 0.99071 1.86389 1.37303 1.24826 1.90328 1.16259 0.79102 0.84499 0.81028 1.90938 1.51222 1.17516 1.85902 1.42653 1.71367 1.14237 1.02942 1.18220 0.95561 0.89382 0.84520 1.21590 1.16073 1.00803 0.90237 1.18003 0.86480 0.91207 0.93624 1.19864 1.28055 1.08264 0.95335 0.89750 1.26825 0.92041 0.97312 1.01738 1.69784 1.18871 1.21962 1.33728 0.85125 0.79482 0.77385 0.76954 1.18466 1.18974 1.18400 1.21871 1.16486 0.95525 0.98117 1.21932 0.95547 0.99034 0.87519 1.67310 1.24375 1.06477 1.31661 0.91571 0.89244 0.94870 0.87322 0.91582 0.87357 0.89984 0.90118 0.95988 0.75662 0.74630 0.85497 0.89777 0.86509 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 10.24 71.98 0.74 -2.81 16 2 C 0.11 2.50 5.76 86.38 0.50 3.00 16 3 N -0.62 -18.58 2.44 -839.83 -2.05 -20.63 16 4 C 0.13 3.18 5.81 86.38 0.50 3.68 16 5 C 0.07 1.43 7.39 71.98 0.53 1.97 16 6 O -0.58 -10.90 12.48 -148.98 -1.86 -12.76 16 7 C 0.69 28.56 8.23 179.06 1.47 30.03 16 8 O -0.58 -28.78 14.21 -3.97 -0.06 -28.84 16 9 N -0.66 -28.39 5.27 -322.38 -1.70 -30.09 16 10 C 0.35 18.12 7.41 132.76 0.98 19.10 16 11 C -0.26 -13.94 8.62 23.00 0.20 -13.75 16 12 C 0.12 6.30 5.60 -21.11 -0.12 6.18 16 13 C -0.48 -25.43 9.14 23.52 0.21 -25.22 16 14 H 0.08 4.21 7.87 -2.91 -0.02 4.19 16 15 C 0.04 1.79 5.31 85.29 0.45 2.24 16 16 N -0.82 -40.51 10.70 21.84 0.23 -40.27 16 17 Si 0.99 36.23 29.57 68.60 2.03 38.26 16 18 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 19 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 21 C -0.30 -15.08 9.85 22.60 0.22 -14.86 16 22 C 0.11 5.65 11.10 84.27 0.94 6.59 16 23 N -0.58 -31.22 7.89 -194.27 -1.53 -32.75 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 27 H 0.11 2.14 7.11 -2.39 -0.02 2.12 16 28 H 0.07 1.57 6.30 -2.39 -0.02 1.56 16 29 H 0.11 2.01 8.07 -2.38 -0.02 1.99 16 30 H 0.08 2.27 7.42 -2.39 -0.02 2.26 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.39 4.16 9.12 -74.05 -0.68 3.48 16 34 H 0.41 15.25 6.39 -92.71 -0.59 14.65 16 35 H 0.13 6.74 6.11 -2.90 -0.02 6.72 16 36 H 0.29 12.91 8.29 -92.70 -0.77 12.14 16 37 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 38 H 0.15 6.37 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -71.83 321.85 1.53 -70.30 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: -0.17 Total: 40.63 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.63 Total: 16.16 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -5.04 Total: -123.74 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.92 Total: -41.60 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -71.83 1.53 -70.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871721206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.715 kcal (2) G-P(sol) polarization free energy of solvation -71.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds