Wall clock time and date at job start Tue Mar 31 2020 00:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42908 * 109.46948 * 2 1 4 4 C 1.35893 * 117.00004 * 179.97438 * 3 2 1 5 5 C 1.38718 * 120.04377 * 0.03060 * 4 3 2 6 6 C 1.38340 * 119.91917 * 180.02562 * 5 4 3 7 7 F 1.35105 * 119.99652 * 179.97438 * 6 5 4 8 8 C 1.38510 * 120.00863 * 359.97438 * 6 5 4 9 9 C 1.38207 * 120.08613 * 359.97438 * 8 6 5 10 10 C 1.50701 * 119.96624 * 180.02562 * 9 8 6 11 11 N 1.46896 * 109.47115 * 269.98458 * 10 9 8 12 12 C 1.47481 * 110.99569 * 265.96515 * 11 10 9 13 13 C 1.53515 * 87.93428 * 221.29920 * 12 11 10 14 14 C 1.50692 * 114.34713 * 139.68128 * 13 12 11 15 15 H 1.08001 * 120.00719 * 266.07925 * 14 13 12 16 16 C 1.37886 * 119.99541 * 86.07953 * 14 13 12 17 17 N 1.31520 * 119.99705 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00344 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46787 * 89.99827 * 18 16 14 20 20 H 1.48495 * 109.47295 * 210.00302 * 18 16 14 21 21 H 1.48503 * 109.46989 * 330.00491 * 18 16 14 22 22 C 1.47485 * 110.99782 * 169.99905 * 11 10 9 23 23 C 1.38175 * 120.08013 * 0.02562 * 9 8 6 24 24 H 1.09001 * 109.46820 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47002 * 299.99742 * 1 2 3 26 26 H 1.08995 * 109.47050 * 60.00070 * 1 2 3 27 27 H 1.08999 * 109.47658 * 240.00046 * 2 1 3 28 28 H 1.08998 * 109.47554 * 119.99862 * 2 1 3 29 29 H 1.08001 * 120.03634 * 0.03225 * 5 4 3 30 30 H 1.07998 * 119.96098 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.46555 * 29.98214 * 10 9 8 32 32 H 1.08999 * 109.47464 * 149.97395 * 10 9 8 33 33 H 1.08997 * 113.47811 * 336.06447 * 12 11 10 34 34 H 1.08998 * 113.47557 * 106.53525 * 12 11 10 35 35 H 1.09001 * 114.16877 * 272.38297 * 13 12 11 36 36 H 0.96993 * 119.99656 * 180.02562 * 17 16 14 37 37 H 1.09000 * 113.47322 * 253.46151 * 22 11 10 38 38 H 1.09001 * 113.47854 * 23.93027 * 22 11 10 39 39 H 1.08000 * 120.00650 * 179.74962 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1994 0.4260 0.0004 6 6 5.5705 0.6103 0.0015 7 9 6.3958 -0.4594 0.0019 8 6 6.0973 1.8913 0.0022 9 6 5.2548 2.9869 0.0012 10 6 5.8308 4.3795 0.0014 11 7 6.0165 4.8324 1.3864 12 6 4.8491 5.6047 1.8508 13 6 5.8293 6.5774 2.5215 14 6 5.4470 8.0296 2.3963 15 1 5.8473 8.6259 1.5897 16 6 4.5860 8.5972 3.3116 17 7 4.2519 9.8645 3.2020 18 14 3.8930 7.5658 4.7064 19 1 4.7988 7.6481 5.8802 20 1 2.5501 8.0775 5.0805 21 1 3.7792 6.1518 4.2672 22 6 6.7935 6.0852 1.4331 23 6 3.8848 2.8070 0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.7880 -0.5726 -0.0006 30 1 7.1677 2.0343 0.0026 31 1 6.7927 4.3747 -0.5114 32 1 5.1480 5.0552 -0.5136 33 1 4.2764 6.0556 1.0403 34 1 4.2231 5.0619 2.5590 35 1 6.1169 6.2937 3.5339 36 1 3.6465 10.2638 3.8461 37 1 7.8153 5.9494 1.7873 38 1 6.7396 6.6641 0.5111 39 1 3.2275 3.6640 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877625887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:34 Heat of formation + Delta-G solvation = -26.544843 kcal Electronic energy + Delta-G solvation = -21186.593883 eV Core-core repulsion = 17817.052687 eV Total energy + Delta-G solvation = -3369.541196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.96855 -40.31326 -39.23587 -37.48450 -32.98127 -32.22549 -31.83595 -29.58655 -28.96238 -26.01795 -25.05722 -23.94795 -22.65410 -22.42054 -20.79507 -18.69349 -18.23037 -17.02386 -16.86730 -16.40462 -16.22561 -16.01487 -15.59234 -15.17097 -14.64505 -14.41024 -14.07982 -13.64731 -13.41045 -13.25691 -12.97981 -12.85782 -12.55370 -12.08352 -11.84690 -11.84364 -11.70356 -11.39449 -11.20277 -10.99760 -10.87527 -10.37519 -9.97681 -9.95027 -9.63953 -9.15136 -8.78342 -8.56665 -8.31142 -8.20127 -6.12043 -4.12743 1.08863 1.25539 2.93589 3.29650 3.38231 3.43492 3.51840 4.12640 4.41417 4.52582 4.61769 4.71701 4.82130 4.88508 4.94866 4.96582 5.14387 5.17878 5.30700 5.39355 5.47692 5.48448 5.71714 5.75187 5.89031 5.96765 6.04031 6.06744 6.14266 6.26472 6.38528 6.48755 6.49875 6.64058 6.74937 6.95259 7.22702 7.33053 7.65932 7.79619 8.46827 8.90895 9.51064 11.00382 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.004384 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.700900 B = 6385.712081 C = 7503.639646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.310 6.310 4 C 0.158 3.842 5 C -0.254 4.254 6 C 0.134 3.866 7 F -0.140 7.140 8 C -0.174 4.174 9 C 0.008 3.992 10 C 0.053 3.947 11 N -0.478 5.478 12 C -0.011 4.011 13 C 0.000 4.000 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.257 1.257 22 C 0.009 3.991 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.265 0.735 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -20.100 -7.909 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.223 6.223 4 C 0.112 3.888 5 C -0.274 4.274 6 C 0.115 3.885 7 F -0.119 7.119 8 C -0.193 4.193 9 C 0.007 3.993 10 C -0.076 4.076 11 N -0.200 5.200 12 C -0.140 4.140 13 C -0.019 4.019 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.128 4.128 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.181 1.181 22 C -0.119 4.119 23 C -0.171 4.171 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.111 -20.464 -7.502 22.017 hybrid contribution -0.539 -0.331 0.229 0.673 sum -3.650 -20.795 -7.273 22.331 Atomic orbital electron populations 1.21779 0.92569 1.02827 1.03773 1.22821 0.96050 0.81947 1.01461 1.86124 1.18559 1.29302 1.88361 1.18588 0.82148 0.93240 0.94778 1.21026 0.92551 0.99463 1.14369 1.17304 0.87089 0.83369 1.00773 1.91486 1.71891 1.54704 1.93813 1.20894 1.01188 0.90108 1.07132 1.19428 0.91648 0.95270 0.92965 1.21690 1.00527 0.91561 0.93780 1.68921 1.10910 1.24419 1.15766 1.24477 0.94445 0.95075 0.99975 1.20501 0.91934 0.95162 0.94302 1.20914 1.27961 0.92648 1.13471 0.90752 1.25008 0.95717 0.94604 0.97448 1.69909 1.35041 1.11858 1.36766 0.86887 0.78446 0.81759 0.82745 1.20271 1.21492 1.18090 1.23828 0.98481 0.89254 1.00378 1.20432 0.94917 0.95013 1.06768 0.90382 0.91320 0.91406 0.91984 0.91921 0.84658 0.84605 0.90155 0.92211 0.91552 0.91778 0.92571 0.92573 0.91357 0.91858 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.92 10.14 -19.40 -0.20 -4.11 16 4 C 0.16 2.14 6.69 -39.22 -0.26 1.88 16 5 C -0.25 -3.18 9.02 -39.37 -0.35 -3.54 16 6 C 0.13 1.80 7.30 -39.44 -0.29 1.51 16 7 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 8 C -0.17 -2.39 9.68 -39.49 -0.38 -2.78 16 9 C 0.01 0.11 5.46 -104.66 -0.57 -0.46 16 10 C 0.05 0.81 4.94 -4.98 -0.02 0.78 16 11 N -0.48 -8.82 6.32 -246.08 -1.55 -10.38 16 12 C -0.01 -0.22 6.70 -7.54 -0.05 -0.27 16 13 C 0.00 0.01 2.95 -91.24 -0.27 -0.26 16 14 C -0.51 -13.91 9.38 -34.44 -0.32 -14.24 16 15 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 16 C 0.07 2.10 5.47 -17.81 -0.10 2.00 16 17 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 18 Si 0.87 21.14 27.14 -169.99 -4.61 16.52 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.26 -5.94 5.68 56.52 0.32 -5.62 16 22 C 0.01 0.17 7.25 -7.54 -0.05 0.12 16 23 C -0.15 -2.21 9.64 -39.42 -0.38 -2.59 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.14 1.38 6.30 -52.49 -0.33 1.05 16 30 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16 32 H 0.06 0.91 7.24 -51.93 -0.38 0.53 16 33 H 0.07 1.38 7.38 -51.93 -0.38 1.00 16 34 H 0.06 1.36 7.11 -51.93 -0.37 0.99 16 35 H 0.06 1.32 7.04 -51.93 -0.37 0.95 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.21 7.87 -51.93 -0.41 0.80 16 39 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -29.78 326.24 -8.73 -38.51 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.62 Total: 0.35 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.47 Total: -17.86 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.78 Total: -36.50 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.61 Total: 16.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.78 -8.73 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877625887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.964 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds