Wall clock time and date at job start Tue Mar 31 2020 00:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42908 * 109.46948 * 2 1 4 4 C 1.35893 * 117.00004 * 179.97438 * 3 2 1 5 5 C 1.38718 * 120.04377 * 0.03060 * 4 3 2 6 6 C 1.38340 * 119.91917 * 180.02562 * 5 4 3 7 7 F 1.35105 * 119.99652 * 179.97438 * 6 5 4 8 8 C 1.38510 * 120.00863 * 359.97438 * 6 5 4 9 9 C 1.38207 * 120.08613 * 359.97438 * 8 6 5 10 10 C 1.50701 * 119.96624 * 180.02562 * 9 8 6 11 11 N 1.46896 * 109.47115 * 269.98458 * 10 9 8 12 12 C 1.47481 * 110.99569 * 265.96515 * 11 10 9 13 13 C 1.53515 * 87.93428 * 221.29920 * 12 11 10 14 14 C 1.50692 * 114.34713 * 139.68128 * 13 12 11 15 15 H 1.08001 * 120.00719 * 266.07925 * 14 13 12 16 16 C 1.37886 * 119.99541 * 86.07953 * 14 13 12 17 17 N 1.31520 * 119.99705 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00344 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46787 * 89.99827 * 18 16 14 20 20 H 1.48495 * 109.47295 * 210.00302 * 18 16 14 21 21 H 1.48503 * 109.46989 * 330.00491 * 18 16 14 22 22 C 1.47485 * 110.99782 * 169.99905 * 11 10 9 23 23 C 1.38175 * 120.08013 * 0.02562 * 9 8 6 24 24 H 1.09001 * 109.46820 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47002 * 299.99742 * 1 2 3 26 26 H 1.08995 * 109.47050 * 60.00070 * 1 2 3 27 27 H 1.08999 * 109.47658 * 240.00046 * 2 1 3 28 28 H 1.08998 * 109.47554 * 119.99862 * 2 1 3 29 29 H 1.08001 * 120.03634 * 0.03225 * 5 4 3 30 30 H 1.07998 * 119.96098 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.46555 * 29.98214 * 10 9 8 32 32 H 1.08999 * 109.47464 * 149.97395 * 10 9 8 33 33 H 1.08997 * 113.47811 * 336.06447 * 12 11 10 34 34 H 1.08998 * 113.47557 * 106.53525 * 12 11 10 35 35 H 1.09001 * 114.16877 * 272.38297 * 13 12 11 36 36 H 0.96993 * 119.99656 * 180.02562 * 17 16 14 37 37 H 1.09000 * 113.47322 * 253.46151 * 22 11 10 38 38 H 1.09001 * 113.47854 * 23.93027 * 22 11 10 39 39 H 1.08000 * 120.00650 * 179.74962 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1994 0.4260 0.0004 6 6 5.5705 0.6103 0.0015 7 9 6.3958 -0.4594 0.0019 8 6 6.0973 1.8913 0.0022 9 6 5.2548 2.9869 0.0012 10 6 5.8308 4.3795 0.0014 11 7 6.0165 4.8324 1.3864 12 6 4.8491 5.6047 1.8508 13 6 5.8293 6.5774 2.5215 14 6 5.4470 8.0296 2.3963 15 1 5.8473 8.6259 1.5897 16 6 4.5860 8.5972 3.3116 17 7 4.2519 9.8645 3.2020 18 14 3.8930 7.5658 4.7064 19 1 4.7988 7.6481 5.8802 20 1 2.5501 8.0775 5.0805 21 1 3.7792 6.1518 4.2672 22 6 6.7935 6.0852 1.4331 23 6 3.8848 2.8070 0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.7880 -0.5726 -0.0006 30 1 7.1677 2.0343 0.0026 31 1 6.7927 4.3747 -0.5114 32 1 5.1480 5.0552 -0.5136 33 1 4.2764 6.0556 1.0403 34 1 4.2231 5.0619 2.5590 35 1 6.1169 6.2937 3.5339 36 1 3.6465 10.2638 3.8461 37 1 7.8153 5.9494 1.7873 38 1 6.7396 6.6641 0.5111 39 1 3.2275 3.6640 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877625887.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:33 Heat of formation + Delta-G solvation = -45.435628 kcal Electronic energy + Delta-G solvation = -21187.413048 eV Core-core repulsion = 17817.052687 eV Total energy + Delta-G solvation = -3370.360362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.98715 -41.37497 -40.65760 -38.52896 -34.83130 -33.44354 -32.79850 -30.62795 -30.39693 -27.59846 -26.67278 -24.98866 -23.74993 -23.65527 -21.88213 -20.41840 -19.35737 -18.93098 -17.86066 -17.23691 -17.23239 -17.04088 -16.85137 -16.53247 -16.31965 -15.50637 -15.35085 -15.32077 -14.66088 -14.45427 -14.18821 -13.99090 -13.48372 -13.39647 -13.21723 -13.00929 -12.84185 -12.75963 -12.53299 -12.16430 -12.02468 -11.82499 -11.70451 -11.61446 -11.36485 -11.07918 -10.63849 -9.92804 -9.71209 -9.31658 -8.28514 -6.33045 0.03728 0.22468 1.38121 1.41018 1.53066 2.09962 2.38253 2.45528 3.04960 3.10824 3.33868 3.60253 3.86580 3.90062 4.02492 4.07093 4.10376 4.16915 4.23361 4.28366 4.34842 4.39739 4.61469 4.69203 4.73269 4.81133 4.91814 4.92601 4.94047 4.98286 5.05408 5.09171 5.23550 5.29208 5.49002 5.51027 5.64835 5.67047 6.23743 6.30973 6.31600 6.73066 7.34098 8.87452 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.004384 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.700900 B = 6385.712081 C = 7503.639646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.327 6.327 4 C 0.155 3.845 5 C -0.246 4.246 6 C 0.129 3.871 7 F -0.139 7.139 8 C -0.177 4.177 9 C -0.002 4.002 10 C 0.054 3.946 11 N -0.472 5.472 12 C 0.000 4.000 13 C -0.016 4.016 14 C -0.512 4.512 15 H 0.038 0.962 16 C 0.018 3.982 17 N -0.948 5.948 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.239 1.239 22 C 0.019 3.981 23 C -0.167 4.167 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.147 0.853 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -23.102 -7.862 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.241 6.241 4 C 0.109 3.891 5 C -0.266 4.266 6 C 0.110 3.890 7 F -0.118 7.118 8 C -0.196 4.196 9 C -0.003 4.003 10 C -0.074 4.074 11 N -0.194 5.194 12 C -0.129 4.129 13 C -0.036 4.036 14 C -0.550 4.550 15 H 0.056 0.944 16 C -0.180 4.180 17 N -0.587 5.587 18 Si 0.762 3.238 19 H -0.196 1.196 20 H -0.215 1.215 21 H -0.163 1.163 22 C -0.109 4.109 23 C -0.186 4.186 24 H 0.122 0.878 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.178 0.822 30 H 0.165 0.835 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.202 -23.493 -7.470 24.859 hybrid contribution -0.503 0.565 0.116 0.766 sum -3.706 -22.928 -7.353 24.361 Atomic orbital electron populations 1.21820 0.91370 1.04324 1.03202 1.23166 0.97075 0.80430 1.02627 1.86123 1.18007 1.31773 1.88168 1.18613 0.82838 0.93091 0.94532 1.21240 0.92101 1.00356 1.12880 1.17380 0.87482 0.83303 1.00880 1.91491 1.71912 1.54563 1.93814 1.21006 1.01698 0.90064 1.06834 1.19310 0.91765 0.94963 0.94247 1.21711 1.01802 0.92014 0.91868 1.68857 1.09147 1.23227 1.18152 1.24221 0.94574 0.94546 0.99584 1.20506 0.94606 0.92857 0.95591 1.21155 1.27154 0.94708 1.12032 0.94415 1.25844 0.96277 0.95593 1.00236 1.70049 1.36532 1.13884 1.38281 0.85875 0.77559 0.80859 0.79515 1.19596 1.21506 1.16258 1.23704 0.98796 0.89427 0.99021 1.20500 0.95042 0.95549 1.07535 0.87834 0.92142 0.91730 0.90462 0.90988 0.82249 0.83526 0.88069 0.92340 0.92130 0.92004 0.92584 0.92511 0.89586 0.91883 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.04 0.62 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.74 10.14 -92.34 -0.94 -8.67 16 4 C 0.16 3.93 6.69 22.50 0.15 4.08 16 5 C -0.25 -5.52 9.02 22.41 0.20 -5.32 16 6 C 0.13 3.14 7.30 22.36 0.16 3.30 16 7 F -0.14 -3.34 17.27 44.97 0.78 -2.56 16 8 C -0.18 -4.47 9.68 22.33 0.22 -4.25 16 9 C 0.00 -0.06 5.46 -19.89 -0.11 -0.16 16 10 C 0.05 1.56 4.94 85.56 0.42 1.98 16 11 N -0.47 -16.55 6.32 -932.45 -5.89 -22.44 16 12 C 0.00 0.00 6.70 83.58 0.56 0.56 16 13 C -0.02 -0.73 2.95 -11.20 -0.03 -0.77 16 14 C -0.51 -28.37 9.38 25.60 0.24 -28.13 16 15 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 16 C 0.02 1.04 5.47 84.66 0.46 1.50 16 17 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 18 Si 0.94 43.65 27.14 68.60 1.86 45.51 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.24 -10.36 5.68 99.48 0.56 -9.80 16 22 C 0.02 0.71 7.25 83.58 0.61 1.31 16 23 C -0.17 -4.68 9.64 22.37 0.22 -4.46 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.93 7.66 -2.39 -0.02 0.92 16 28 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.16 2.70 6.30 -2.91 -0.02 2.68 16 30 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.10 2.50 8.02 -2.39 -0.02 2.48 16 32 H 0.06 1.72 7.24 -2.39 -0.02 1.70 16 33 H 0.06 2.50 7.38 -2.39 -0.02 2.49 16 34 H 0.06 2.53 7.11 -2.39 -0.02 2.51 16 35 H 0.06 2.55 7.04 -2.39 -0.02 2.53 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.06 2.35 7.87 -2.39 -0.02 2.33 16 39 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -64.22 326.24 1.24 -62.98 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.90 Total: 13.56 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 4.23 Total: -30.37 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -5.59 Total: -80.44 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.94 Total: -8.67 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.86 Total: 45.51 kcal Total: -64.22 1.24 -62.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877625887.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.540 kcal (2) G-P(sol) polarization free energy of solvation -64.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds