Wall clock time and date at job start Tue Mar 31 2020 00:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35897 * 117.00093 * 180.02562 * 3 2 1 5 5 C 1.38766 * 120.04369 * 359.72437 * 4 3 2 6 6 C 1.38133 * 119.99537 * 179.79064 * 5 4 3 7 7 C 1.38253 * 120.07892 * 0.46795 * 6 5 4 8 8 C 1.38474 * 120.08151 * 359.78072 * 7 6 5 9 9 F 1.35109 * 119.99214 * 179.97438 * 8 7 6 10 10 C 1.38383 * 120.00844 * 359.97438 * 8 7 6 11 11 C 1.50698 * 120.03769 * 180.02562 * 10 8 7 12 12 N 1.46897 * 109.46887 * 269.97190 * 11 10 8 13 13 C 1.47481 * 111.00034 * 265.97141 * 12 11 10 14 14 C 1.53517 * 87.93312 * 221.29690 * 13 12 11 15 15 C 1.50699 * 114.34316 * 139.68838 * 14 13 12 16 16 H 1.08000 * 119.99665 * 266.07845 * 15 14 13 17 17 C 1.37872 * 120.00080 * 86.07224 * 15 14 13 18 18 N 1.31511 * 120.00297 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47244 * 90.00098 * 19 17 15 21 21 H 1.48500 * 109.46993 * 210.00508 * 19 17 15 22 22 H 1.48506 * 109.46956 * 330.00434 * 19 17 15 23 23 C 1.47487 * 111.00117 * 170.00310 * 12 11 10 24 24 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 25 25 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 28 28 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 29 29 H 1.08004 * 120.00143 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.95925 * 180.20728 * 6 5 4 31 31 H 1.07999 * 119.95385 * 179.77063 * 7 6 5 32 32 H 1.08993 * 109.47642 * 29.97336 * 11 10 8 33 33 H 1.09001 * 109.47053 * 149.97794 * 11 10 8 34 34 H 1.08993 * 113.48007 * 336.06631 * 13 12 11 35 35 H 1.09005 * 113.47184 * 106.53273 * 13 12 11 36 36 H 1.09000 * 114.16934 * 272.37846 * 14 13 12 37 37 H 0.96999 * 120.00168 * 179.97438 * 18 17 15 38 38 H 1.08997 * 113.47397 * 253.47297 * 23 12 11 39 39 H 1.09004 * 113.47584 * 23.93560 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1997 0.4255 0.0047 6 6 5.5690 0.6076 -0.0002 7 6 6.0982 1.8849 -0.0006 8 6 5.2568 2.9847 -0.0007 9 9 5.7759 4.2321 -0.0005 10 6 3.8845 2.8063 -0.0008 11 6 2.9683 4.0028 -0.0015 12 7 2.6698 4.3916 1.3833 13 6 1.4166 3.7689 1.8487 14 6 1.0665 5.1052 2.5185 15 6 -0.3820 5.5019 2.3935 16 1 -0.6976 6.1465 1.5864 17 6 -1.3042 5.0421 3.3095 18 7 -0.9198 4.2576 4.2925 19 14 -3.0998 5.5334 3.1542 20 1 -3.8132 4.5413 2.3103 21 1 -3.7203 5.5737 4.5027 22 1 -3.1931 6.8758 2.5259 23 6 1.9752 5.6919 1.4292 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7877 -0.5728 0.0088 30 1 6.2270 -0.2488 0.0005 31 1 7.1690 2.0249 -0.0007 32 1 3.4542 4.8323 -0.5151 33 1 2.0410 3.7501 -0.5157 34 1 0.7391 3.4985 1.0388 35 1 1.5730 2.9557 2.5576 36 1 1.4564 5.2127 3.5307 37 1 -1.5686 3.9344 4.9371 38 1 2.6050 6.5084 1.7824 39 1 1.4468 5.9347 0.5072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877625952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:59 Heat of formation + Delta-G solvation = -25.774800 kcal Electronic energy + Delta-G solvation = -22078.900546 eV Core-core repulsion = 18709.392742 eV Total energy + Delta-G solvation = -3369.507804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.69499 -40.20684 -38.62676 -37.23549 -33.12829 -32.18542 -31.30617 -29.52399 -28.31688 -25.53852 -24.67838 -23.91896 -22.91716 -21.70088 -20.78813 -18.51435 -18.35746 -16.76298 -16.55283 -16.13433 -15.91213 -15.66941 -15.33285 -14.71222 -14.36772 -14.29366 -13.88651 -13.67758 -13.07865 -12.90546 -12.69344 -12.50425 -12.28960 -11.91831 -11.65838 -11.47774 -11.46569 -11.21793 -10.97195 -10.74588 -10.68037 -10.51808 -10.17530 -9.68304 -9.28440 -8.86857 -8.54875 -8.37944 -8.13224 -7.87296 -6.00654 -4.04513 1.22086 1.37487 3.17109 3.30380 3.37382 3.40893 3.64125 4.43548 4.46751 4.72610 4.88571 4.93606 4.96136 5.04506 5.19397 5.24721 5.28276 5.36804 5.41891 5.69235 5.70041 5.86561 5.91120 6.11247 6.16045 6.19456 6.23256 6.33119 6.37221 6.46056 6.64077 6.77825 6.83539 6.84759 7.26705 7.30665 7.46911 7.78771 7.97316 8.17558 8.44159 8.98296 9.59673 11.08986 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.005412 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.133457 B = 5172.037888 C = 6281.867161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.057 3.943 3 O -0.298 6.298 4 C 0.169 3.831 5 C -0.224 4.224 6 C -0.059 4.059 7 C -0.198 4.198 8 C 0.150 3.850 9 F -0.131 7.131 10 C -0.130 4.130 11 C 0.066 3.934 12 N -0.480 5.480 13 C 0.019 3.981 14 C 0.038 3.962 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.004 4.004 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 -10.175 -10.125 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 O -0.211 6.211 4 C 0.122 3.878 5 C -0.243 4.243 6 C -0.078 4.078 7 C -0.217 4.217 8 C 0.130 3.870 9 F -0.109 7.109 10 C -0.132 4.132 11 C -0.062 4.062 12 N -0.202 5.202 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.133 4.133 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.631 -10.188 -9.631 17.009 hybrid contribution -1.441 0.117 -0.579 1.557 sum 8.191 -10.071 -10.210 16.515 Atomic orbital electron populations 1.21782 0.92443 1.02569 1.04345 1.22802 0.96268 0.81821 1.00949 1.86208 1.18090 1.29150 1.87606 1.18481 0.82995 0.92572 0.93783 1.21220 0.94262 0.98085 1.10766 1.20646 0.94294 0.96317 0.96518 1.20946 1.00000 0.91711 1.09038 1.17141 0.90438 0.79563 0.99896 1.91495 1.86786 1.39186 1.93476 1.19124 0.92593 0.94004 1.07507 1.21330 0.97259 0.93549 0.94075 1.68926 1.29837 1.05947 1.15482 1.24002 0.87783 1.00422 0.98788 1.20126 0.93714 0.90377 0.93852 1.21031 0.92056 1.30304 1.11703 0.92499 1.24998 0.98733 0.94870 0.94928 1.69977 1.34264 1.33508 1.14675 0.86649 0.85312 0.79026 0.77334 1.20705 1.21197 1.19836 1.23996 0.96246 0.92411 1.00652 0.90621 0.91577 0.90619 0.92378 0.91978 0.85168 0.85156 0.84969 0.91111 0.92384 0.92485 0.92437 0.91978 0.92981 0.92045 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 37.16 0.38 -1.40 16 2 C 0.06 0.68 5.46 37.16 0.20 0.88 16 3 O -0.30 -4.80 8.53 -19.42 -0.17 -4.97 16 4 C 0.17 2.67 6.66 -39.23 -0.26 2.40 16 5 C -0.22 -2.84 9.04 -39.42 -0.36 -3.20 16 6 C -0.06 -0.68 10.04 -39.61 -0.40 -1.08 16 7 C -0.20 -2.54 10.02 -39.49 -0.40 -2.94 16 8 C 0.15 2.38 7.24 -39.44 -0.29 2.10 16 9 F -0.13 -2.19 16.48 2.25 0.04 -2.15 16 10 C -0.13 -2.25 5.48 -104.41 -0.57 -2.82 16 11 C 0.07 1.26 4.54 -4.98 -0.02 1.23 16 12 N -0.48 -10.49 6.32 -246.08 -1.55 -12.05 16 13 C 0.02 0.45 6.70 -7.54 -0.05 0.40 16 14 C 0.04 1.00 3.76 -91.24 -0.34 0.65 16 15 C -0.51 -14.19 8.83 -34.44 -0.30 -14.50 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 18 N -0.89 -25.84 13.26 55.43 0.74 -25.10 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.00 -0.10 7.25 -7.54 -0.05 -0.15 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 28 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 29 H 0.13 1.31 6.30 -52.48 -0.33 0.98 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 33 H 0.06 1.12 6.69 -51.93 -0.35 0.78 16 34 H 0.06 1.39 7.32 -51.93 -0.38 1.01 16 35 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -30.33 328.33 -9.16 -39.49 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.58 Total: 0.31 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.56 Total: -16.64 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.82 Total: -37.15 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.17 Total: -4.97 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.33 -9.16 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877625952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.710 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds