Wall clock time and date at job start Tue Mar 31 2020 00:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35897 * 117.00093 * 180.02562 * 3 2 1 5 5 C 1.38766 * 120.04369 * 359.72437 * 4 3 2 6 6 C 1.38133 * 119.99537 * 179.79064 * 5 4 3 7 7 C 1.38253 * 120.07892 * 0.46795 * 6 5 4 8 8 C 1.38474 * 120.08151 * 359.78072 * 7 6 5 9 9 F 1.35109 * 119.99214 * 179.97438 * 8 7 6 10 10 C 1.38383 * 120.00844 * 359.97438 * 8 7 6 11 11 C 1.50698 * 120.03769 * 180.02562 * 10 8 7 12 12 N 1.46897 * 109.46887 * 269.97190 * 11 10 8 13 13 C 1.47481 * 111.00034 * 265.97141 * 12 11 10 14 14 C 1.53517 * 87.93312 * 221.29690 * 13 12 11 15 15 C 1.50699 * 114.34316 * 139.68838 * 14 13 12 16 16 H 1.08000 * 119.99665 * 266.07845 * 15 14 13 17 17 C 1.37872 * 120.00080 * 86.07224 * 15 14 13 18 18 N 1.31511 * 120.00297 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47244 * 90.00098 * 19 17 15 21 21 H 1.48500 * 109.46993 * 210.00508 * 19 17 15 22 22 H 1.48506 * 109.46956 * 330.00434 * 19 17 15 23 23 C 1.47487 * 111.00117 * 170.00310 * 12 11 10 24 24 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 25 25 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 28 28 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 29 29 H 1.08004 * 120.00143 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.95925 * 180.20728 * 6 5 4 31 31 H 1.07999 * 119.95385 * 179.77063 * 7 6 5 32 32 H 1.08993 * 109.47642 * 29.97336 * 11 10 8 33 33 H 1.09001 * 109.47053 * 149.97794 * 11 10 8 34 34 H 1.08993 * 113.48007 * 336.06631 * 13 12 11 35 35 H 1.09005 * 113.47184 * 106.53273 * 13 12 11 36 36 H 1.09000 * 114.16934 * 272.37846 * 14 13 12 37 37 H 0.96999 * 120.00168 * 179.97438 * 18 17 15 38 38 H 1.08997 * 113.47397 * 253.47297 * 23 12 11 39 39 H 1.09004 * 113.47584 * 23.93560 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1997 0.4255 0.0047 6 6 5.5690 0.6076 -0.0002 7 6 6.0982 1.8849 -0.0006 8 6 5.2568 2.9847 -0.0007 9 9 5.7759 4.2321 -0.0005 10 6 3.8845 2.8063 -0.0008 11 6 2.9683 4.0028 -0.0015 12 7 2.6698 4.3916 1.3833 13 6 1.4166 3.7689 1.8487 14 6 1.0665 5.1052 2.5185 15 6 -0.3820 5.5019 2.3935 16 1 -0.6976 6.1465 1.5864 17 6 -1.3042 5.0421 3.3095 18 7 -0.9198 4.2576 4.2925 19 14 -3.0998 5.5334 3.1542 20 1 -3.8132 4.5413 2.3103 21 1 -3.7203 5.5737 4.5027 22 1 -3.1931 6.8758 2.5259 23 6 1.9752 5.6919 1.4292 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7877 -0.5728 0.0088 30 1 6.2270 -0.2488 0.0005 31 1 7.1690 2.0249 -0.0007 32 1 3.4542 4.8323 -0.5151 33 1 2.0410 3.7501 -0.5157 34 1 0.7391 3.4985 1.0388 35 1 1.5730 2.9557 2.5576 36 1 1.4564 5.2127 3.5307 37 1 -1.5686 3.9344 4.9371 38 1 2.6050 6.5084 1.7824 39 1 1.4468 5.9347 0.5072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877625952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:59 Heat of formation + Delta-G solvation = -44.945294 kcal Electronic energy + Delta-G solvation = -22079.731841 eV Core-core repulsion = 18709.392742 eV Total energy + Delta-G solvation = -3370.339099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.90664 -41.40423 -40.36023 -38.30174 -34.94161 -33.69183 -32.41811 -30.61184 -29.93326 -27.34130 -26.56237 -24.98418 -24.50391 -22.81498 -22.07203 -20.48757 -19.44817 -18.65338 -17.85602 -17.26086 -17.01974 -16.89887 -16.65276 -16.45695 -16.15036 -15.68515 -15.36496 -15.15728 -14.38306 -14.17622 -13.89229 -13.76960 -13.55357 -13.40792 -13.19930 -12.96093 -12.88186 -12.71826 -12.49930 -12.39884 -12.10015 -11.86754 -11.63059 -11.53446 -11.23866 -10.90466 -10.50999 -9.79584 -9.63954 -9.21504 -8.14864 -6.26623 0.13601 0.31966 1.41801 1.42692 1.53708 2.15722 2.42094 2.57455 3.13840 3.39422 3.41582 3.68260 3.79708 3.97255 4.05440 4.10043 4.21781 4.24593 4.31945 4.37686 4.41283 4.49928 4.65062 4.71504 4.82721 4.85309 4.91049 4.92100 5.00377 5.15175 5.18357 5.22029 5.25622 5.34588 5.51397 5.61197 5.79871 5.83334 6.28183 6.34730 6.43815 6.81663 7.41481 8.95269 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.005412 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.133457 B = 5172.037888 C = 6281.867161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.330 6.330 4 C 0.151 3.849 5 C -0.219 4.219 6 C -0.044 4.044 7 C -0.194 4.194 8 C 0.128 3.872 9 F -0.143 7.143 10 C -0.166 4.166 11 C 0.073 3.927 12 N -0.481 5.481 13 C 0.043 3.957 14 C 0.021 3.979 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.017 3.983 18 N -0.922 5.922 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.265 1.265 23 C 0.008 3.992 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.160 0.840 30 H 0.176 0.824 31 H 0.159 0.841 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.958 -11.921 -11.373 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.244 6.244 4 C 0.104 3.896 5 C -0.238 4.238 6 C -0.062 4.062 7 C -0.212 4.212 8 C 0.108 3.892 9 F -0.122 7.122 10 C -0.168 4.168 11 C -0.055 4.055 12 N -0.203 5.203 13 C -0.086 4.086 14 C 0.002 3.998 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.784 3.216 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.190 1.190 23 C -0.120 4.120 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.178 0.822 30 H 0.193 0.807 31 H 0.177 0.823 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.389 -11.930 -10.894 19.208 hybrid contribution -1.594 0.581 -0.203 1.708 sum 8.795 -11.350 -11.097 18.147 Atomic orbital electron populations 1.21808 0.92645 1.04065 1.02399 1.23077 0.96171 0.80540 1.02712 1.86167 1.18694 1.31628 1.87866 1.18721 0.83359 0.93035 0.94484 1.21611 0.94620 0.98388 1.09149 1.21199 0.94308 0.97085 0.93602 1.21329 1.01050 0.91278 1.07575 1.17473 0.90470 0.80067 1.01170 1.91456 1.86826 1.40146 1.93752 1.19112 0.93037 0.93946 1.10731 1.21207 0.97500 0.95002 0.91789 1.68865 1.28271 1.05137 1.18074 1.23588 0.88711 0.98565 0.97728 1.20068 0.93938 0.92584 0.93210 1.21323 0.93044 1.30451 1.11963 0.92319 1.25827 1.03323 0.94681 0.94448 1.70108 1.35859 1.34589 1.15503 0.85552 0.79605 0.79011 0.77480 1.19861 1.20768 1.18973 1.23841 0.95632 0.93022 0.99532 0.93961 0.92023 0.87390 0.89381 0.91150 0.82227 0.80662 0.82303 0.90573 0.93354 0.93246 0.94793 0.95400 0.92828 0.90932 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 10.28 71.98 0.74 -2.71 16 2 C 0.05 1.11 5.46 71.98 0.39 1.50 16 3 O -0.33 -10.67 8.53 -92.39 -0.79 -11.46 16 4 C 0.15 4.65 6.66 22.50 0.15 4.80 16 5 C -0.22 -4.86 9.04 22.37 0.20 -4.66 16 6 C -0.04 -0.82 10.04 22.25 0.22 -0.59 16 7 C -0.19 -4.41 10.02 22.33 0.22 -4.19 16 8 C 0.13 3.97 7.24 22.36 0.16 4.13 16 9 F -0.14 -4.77 16.48 44.97 0.74 -4.02 16 10 C -0.17 -5.75 5.48 -19.73 -0.11 -5.86 16 11 C 0.07 2.84 4.54 85.56 0.39 3.23 16 12 N -0.48 -21.71 6.32 -932.47 -5.89 -27.60 16 13 C 0.04 2.18 6.70 83.58 0.56 2.74 16 14 C 0.02 1.14 3.76 -11.19 -0.04 1.10 16 15 C -0.53 -30.05 8.83 25.60 0.23 -29.83 16 16 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 17 C 0.02 0.94 5.46 84.65 0.46 1.40 16 18 N -0.92 -55.23 13.26 21.44 0.28 -54.95 16 19 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.01 0.38 7.25 83.57 0.61 0.99 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 1.44 7.67 -2.39 -0.02 1.43 16 28 H 0.07 1.44 7.65 -2.38 -0.02 1.43 16 29 H 0.16 2.52 6.30 -2.91 -0.02 2.50 16 30 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.08 2.80 7.58 -2.39 -0.02 2.78 16 33 H 0.05 1.94 6.69 -2.39 -0.02 1.93 16 34 H 0.05 2.53 7.32 -2.39 -0.02 2.51 16 35 H 0.03 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.03 1.68 8.11 -2.39 -0.02 1.66 16 37 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.06 2.68 7.87 -2.39 -0.02 2.66 16 Total: -1.00 -68.28 328.33 1.60 -66.68 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.04 Total: 13.41 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 4.19 Total: -27.95 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -5.60 Total: -82.55 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.79 Total: -11.46 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.74 Total: -4.02 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -68.28 1.60 -66.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877625952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.735 kcal (2) G-P(sol) polarization free energy of solvation -68.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds