Wall clock time and date at job start Tue Mar 31 2020 00:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47078 * 2 1 4 4 C 1.34643 * 117.00195 * 180.02562 * 3 2 1 5 5 O 1.21394 * 119.99841 * 359.97438 * 4 3 2 6 6 C 1.48354 * 120.00321 * 179.97438 * 4 3 2 7 7 C 1.39114 * 120.51171 * 180.30370 * 6 4 3 8 8 C 1.39872 * 118.17946 * 180.24002 * 7 6 4 9 9 N 1.38505 * 120.50802 * 179.73467 * 8 7 6 10 10 C 1.46505 * 120.00212 * 359.72017 * 9 8 7 11 11 H 1.09002 * 109.47068 * 35.00145 * 10 9 8 12 12 C 1.52997 * 109.47212 * 275.00085 * 10 9 8 13 13 C 1.50699 * 109.47262 * 154.99999 * 10 9 8 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47319 * 60.00570 * 17 15 13 19 19 H 1.48503 * 109.46734 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47266 * 300.00384 * 17 15 13 21 21 N 1.32824 * 118.97721 * 359.45973 * 8 7 6 22 22 C 1.31849 * 120.91795 * 0.27393 * 21 8 7 23 23 C 1.50706 * 118.98914 * 180.02562 * 22 21 8 24 24 N 1.31538 * 122.01798 * 0.02562 * 22 21 8 25 25 H 1.09003 * 109.47312 * 300.00445 * 1 2 3 26 26 H 1.09000 * 109.47062 * 60.00061 * 1 2 3 27 27 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47012 * 239.99366 * 2 1 3 29 29 H 1.09002 * 109.46575 * 119.99783 * 2 1 3 30 30 H 1.07998 * 120.90635 * 359.97002 * 7 6 4 31 31 H 0.97005 * 120.00548 * 179.72215 * 9 8 7 32 32 H 1.08996 * 109.47853 * 179.97438 * 12 10 9 33 33 H 1.09002 * 109.47153 * 300.00008 * 12 10 9 34 34 H 1.08998 * 109.47533 * 59.99637 * 12 10 9 35 35 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.46712 * 90.00500 * 23 22 21 37 37 H 1.09006 * 109.46511 * 210.00035 * 23 22 21 38 38 H 1.08995 * 109.46996 * 329.99996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0883 0.5827 -0.0005 6 6 3.9159 2.9163 -0.0011 7 6 5.2933 3.1108 -0.0081 8 6 5.7750 4.4240 -0.0032 9 7 7.1374 4.6733 -0.0041 10 6 8.0863 3.5571 -0.0041 11 1 7.6799 2.7347 -0.5929 12 6 8.3218 3.0878 1.4329 13 6 9.3924 4.0081 -0.6056 14 1 9.5046 5.0246 -0.9528 15 6 10.4445 3.1232 -0.7118 16 7 10.3080 1.8855 -0.2886 17 14 12.0637 3.6825 -1.4567 18 1 12.6169 4.8029 -0.6544 19 1 13.0254 2.5510 -1.4568 20 1 11.8357 4.1380 -2.8517 21 7 4.9056 5.4283 -0.0031 22 6 3.6070 5.2001 -0.0022 23 6 2.6596 6.3721 -0.0028 24 7 3.1131 3.9810 -0.0008 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.9722 2.2709 -0.0126 31 1 7.4634 5.5869 -0.0048 32 1 9.0274 2.2571 1.4330 33 1 8.7282 3.9102 2.0217 34 1 7.3771 2.7616 1.8681 35 1 11.0480 1.2629 -0.3636 36 1 2.4306 6.6536 -1.0306 37 1 1.7393 6.0955 0.5118 38 1 3.1235 7.2146 0.5100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881896436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:03 Heat of formation + Delta-G solvation = -41.412827 kcal Electronic energy + Delta-G solvation = -21385.355232 eV Core-core repulsion = 18035.089274 eV Total energy + Delta-G solvation = -3350.265958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90422 -39.88202 -36.59802 -36.57031 -33.62808 -33.10126 -31.67856 -31.36956 -28.53997 -28.15072 -25.79659 -25.29165 -23.02560 -22.53302 -21.02455 -20.34974 -18.25912 -18.03648 -16.68245 -16.57231 -16.14246 -15.35950 -14.99721 -14.97903 -14.57696 -14.05833 -13.82732 -13.66838 -13.21894 -12.88120 -12.85740 -12.56192 -12.28061 -12.15412 -11.93888 -11.68070 -11.41005 -11.16554 -10.95876 -10.71928 -10.67866 -10.54999 -10.47941 -10.35516 -10.21995 -9.41694 -9.25823 -8.94786 -8.64133 -7.44140 -6.27676 -4.37684 0.77933 1.62927 2.52491 2.70019 3.19394 3.24783 3.25932 3.68572 4.13375 4.19811 4.25689 4.60229 4.82806 4.87598 5.05034 5.10210 5.15974 5.24500 5.45733 5.61608 5.65279 5.69179 5.78854 5.82532 5.96222 6.06148 6.35419 6.47701 6.60323 6.74766 6.83770 7.10408 7.19408 7.51604 7.61234 7.72514 7.88655 8.02696 8.34804 8.56123 8.73938 9.30121 10.78407 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.004369 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.994084 B = 6407.886557 C = 7583.005340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.333 6.333 4 C 0.527 3.473 5 O -0.489 6.489 6 C 0.162 3.838 7 C -0.223 4.223 8 C 0.447 3.553 9 N -0.672 5.672 10 C 0.263 3.737 11 H 0.047 0.953 12 C -0.154 4.154 13 C -0.538 4.538 14 H 0.065 0.935 15 C 0.069 3.931 16 N -0.882 5.882 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.578 5.578 22 C 0.353 3.647 23 C -0.078 4.078 24 N -0.541 5.541 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.403 0.597 32 H 0.096 0.904 33 H 0.034 0.966 34 H 0.014 0.986 35 H 0.268 0.732 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.434 0.936 1.206 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.249 6.249 4 C 0.369 3.631 5 O -0.374 6.374 6 C 0.022 3.978 7 C -0.253 4.253 8 C 0.198 3.802 9 N -0.298 5.298 10 C 0.162 3.838 11 H 0.065 0.935 12 C -0.213 4.213 13 C -0.576 4.576 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.519 5.519 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.306 5.306 22 C 0.083 3.917 23 C -0.137 4.137 24 N -0.264 5.264 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.178 0.822 31 H 0.238 0.762 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.546 0.910 1.224 15.621 hybrid contribution 1.748 -0.367 -0.380 1.826 sum -13.799 0.542 0.844 13.835 Atomic orbital electron populations 1.21782 0.92518 1.02736 1.03679 1.23096 0.95497 0.80336 1.02738 1.86670 1.23030 1.31706 1.83453 1.20807 0.80903 0.88461 0.72946 1.90874 1.60636 1.41242 1.44658 1.19831 0.89678 0.90547 0.97771 1.22286 0.95498 0.98867 1.08697 1.18666 0.87157 0.88110 0.86296 1.45633 1.00107 1.12010 1.72008 1.19037 0.86568 0.84001 0.94233 0.93504 1.22211 0.99645 1.02427 0.97003 1.21070 0.96220 0.98312 1.41979 0.91726 1.24871 0.99007 0.94699 0.94912 1.69856 1.32685 1.04052 1.45337 0.86423 0.82278 0.78256 0.79718 1.20020 1.20995 1.20047 1.67769 1.03482 1.35390 1.23936 1.22749 0.88080 0.91688 0.89227 1.20489 0.96661 0.92989 1.03544 1.68151 1.39336 0.98461 1.20496 0.91406 0.91394 0.90336 0.91093 0.91105 0.82237 0.76174 0.88509 0.94699 0.96711 0.92218 0.89936 0.89825 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.33 -5.07 10.07 -40.34 -0.41 -5.48 16 4 C 0.53 9.35 7.97 34.89 0.28 9.62 16 5 O -0.49 -9.48 16.20 -19.18 -0.31 -9.80 16 6 C 0.16 3.03 6.78 -82.72 -0.56 2.47 16 7 C -0.22 -4.47 8.49 -38.65 -0.33 -4.79 16 8 C 0.45 8.94 7.69 -154.86 -1.19 7.75 16 9 N -0.67 -13.88 5.22 -54.89 -0.29 -14.17 16 10 C 0.26 6.20 2.26 -69.08 -0.16 6.05 16 11 H 0.05 1.20 6.50 -51.93 -0.34 0.87 16 12 C -0.15 -3.55 9.24 37.16 0.34 -3.20 16 13 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.88 -23.61 11.32 55.43 0.63 -22.98 16 17 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 N -0.58 -10.68 10.35 -9.98 -0.10 -10.78 16 22 C 0.35 5.88 7.64 -157.36 -1.20 4.68 16 23 C -0.08 -0.91 10.31 36.01 0.37 -0.54 16 24 N -0.54 -9.58 10.14 -7.41 -0.08 -9.65 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.16 3.38 6.03 -52.49 -0.32 3.07 16 31 H 0.40 7.85 8.66 -40.82 -0.35 7.49 16 32 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.01 0.30 7.81 -51.93 -0.41 -0.10 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -28.50 329.45 -7.91 -36.41 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.07 Total: 6.61 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -2.23 Total: 9.80 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.16 Total: -57.59 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.72 Total: -15.27 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.50 -7.91 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881896436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.002 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds