Wall clock time and date at job start Tue Mar 31 2020 00:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47078 * 2 1 4 4 C 1.34643 * 117.00195 * 180.02562 * 3 2 1 5 5 O 1.21394 * 119.99841 * 359.97438 * 4 3 2 6 6 C 1.48354 * 120.00321 * 179.97438 * 4 3 2 7 7 C 1.39114 * 120.51171 * 180.30370 * 6 4 3 8 8 C 1.39872 * 118.17946 * 180.24002 * 7 6 4 9 9 N 1.38505 * 120.50802 * 179.73467 * 8 7 6 10 10 C 1.46505 * 120.00212 * 359.72017 * 9 8 7 11 11 H 1.09002 * 109.47068 * 35.00145 * 10 9 8 12 12 C 1.52997 * 109.47212 * 275.00085 * 10 9 8 13 13 C 1.50699 * 109.47262 * 154.99999 * 10 9 8 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47319 * 60.00570 * 17 15 13 19 19 H 1.48503 * 109.46734 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47266 * 300.00384 * 17 15 13 21 21 N 1.32824 * 118.97721 * 359.45973 * 8 7 6 22 22 C 1.31849 * 120.91795 * 0.27393 * 21 8 7 23 23 C 1.50706 * 118.98914 * 180.02562 * 22 21 8 24 24 N 1.31538 * 122.01798 * 0.02562 * 22 21 8 25 25 H 1.09003 * 109.47312 * 300.00445 * 1 2 3 26 26 H 1.09000 * 109.47062 * 60.00061 * 1 2 3 27 27 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47012 * 239.99366 * 2 1 3 29 29 H 1.09002 * 109.46575 * 119.99783 * 2 1 3 30 30 H 1.07998 * 120.90635 * 359.97002 * 7 6 4 31 31 H 0.97005 * 120.00548 * 179.72215 * 9 8 7 32 32 H 1.08996 * 109.47853 * 179.97438 * 12 10 9 33 33 H 1.09002 * 109.47153 * 300.00008 * 12 10 9 34 34 H 1.08998 * 109.47533 * 59.99637 * 12 10 9 35 35 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.46712 * 90.00500 * 23 22 21 37 37 H 1.09006 * 109.46511 * 210.00035 * 23 22 21 38 38 H 1.08995 * 109.46996 * 329.99996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0883 0.5827 -0.0005 6 6 3.9159 2.9163 -0.0011 7 6 5.2933 3.1108 -0.0081 8 6 5.7750 4.4240 -0.0032 9 7 7.1374 4.6733 -0.0041 10 6 8.0863 3.5571 -0.0041 11 1 7.6799 2.7347 -0.5929 12 6 8.3218 3.0878 1.4329 13 6 9.3924 4.0081 -0.6056 14 1 9.5046 5.0246 -0.9528 15 6 10.4445 3.1232 -0.7118 16 7 10.3080 1.8855 -0.2886 17 14 12.0637 3.6825 -1.4567 18 1 12.6169 4.8029 -0.6544 19 1 13.0254 2.5510 -1.4568 20 1 11.8357 4.1380 -2.8517 21 7 4.9056 5.4283 -0.0031 22 6 3.6070 5.2001 -0.0022 23 6 2.6596 6.3721 -0.0028 24 7 3.1131 3.9810 -0.0008 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.9722 2.2709 -0.0126 31 1 7.4634 5.5869 -0.0048 32 1 9.0274 2.2571 1.4330 33 1 8.7282 3.9102 2.0217 34 1 7.3771 2.7616 1.8681 35 1 11.0480 1.2629 -0.3636 36 1 2.4306 6.6536 -1.0306 37 1 1.7393 6.0955 0.5118 38 1 3.1235 7.2146 0.5100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881896436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:03 Heat of formation + Delta-G solvation = -57.754308 kcal Electronic energy + Delta-G solvation = -21386.063852 eV Core-core repulsion = 18035.089274 eV Total energy + Delta-G solvation = -3350.974578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33950 -41.24539 -38.26100 -37.88024 -35.33324 -34.59013 -33.00143 -32.54950 -30.29339 -29.36304 -27.48071 -26.93404 -24.27477 -23.83800 -22.34434 -22.03876 -19.76841 -19.55435 -18.08510 -17.88165 -17.79265 -17.05286 -16.63780 -16.33273 -16.15830 -15.38966 -15.15697 -15.05612 -14.52199 -14.33543 -14.26481 -13.62876 -13.55649 -13.17758 -13.13266 -12.98258 -12.93795 -12.77819 -12.53710 -12.43114 -12.19772 -12.12183 -12.11311 -11.82095 -11.57870 -11.17670 -10.89549 -10.58734 -10.41736 -9.06945 -8.23783 -6.40568 -0.70213 0.15887 1.25912 1.26784 1.44259 1.44877 1.52937 2.09076 2.42280 2.75382 2.84892 3.07525 3.30181 3.61575 3.80359 3.99962 4.05785 4.21183 4.33800 4.37590 4.59531 4.74910 4.82822 4.83372 4.87500 4.92705 4.93864 4.97023 5.03374 5.24145 5.31908 5.42548 5.55691 5.59953 5.74374 5.97829 6.21556 6.47819 6.59300 6.80841 7.15397 7.31965 8.81797 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.004369 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.994084 B = 6407.886557 C = 7583.005340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 O -0.332 6.332 4 C 0.530 3.470 5 O -0.513 6.513 6 C 0.164 3.836 7 C -0.246 4.246 8 C 0.441 3.559 9 N -0.674 5.674 10 C 0.273 3.727 11 H 0.019 0.981 12 C -0.141 4.141 13 C -0.553 4.553 14 H 0.069 0.931 15 C 0.023 3.977 16 N -0.910 5.910 17 Si 0.969 3.031 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.272 1.272 21 N -0.579 5.579 22 C 0.349 3.651 23 C -0.075 4.075 24 N -0.537 5.537 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.408 0.592 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.021 0.979 35 H 0.268 0.732 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.991 2.125 1.027 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 O -0.247 6.247 4 C 0.373 3.627 5 O -0.400 6.400 6 C 0.023 3.977 7 C -0.276 4.276 8 C 0.192 3.808 9 N -0.301 5.301 10 C 0.170 3.830 11 H 0.037 0.963 12 C -0.200 4.200 13 C -0.591 4.591 14 H 0.087 0.913 15 C -0.178 4.178 16 N -0.548 5.548 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.198 1.198 21 N -0.306 5.306 22 C 0.080 3.920 23 C -0.133 4.133 24 N -0.261 5.261 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.245 0.755 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.157 2.133 1.047 17.321 hybrid contribution 2.036 -0.756 -0.322 2.196 sum -15.121 1.376 0.725 15.200 Atomic orbital electron populations 1.21817 0.89597 1.04603 1.03886 1.23535 0.97697 0.78447 1.03066 1.86663 1.21204 1.34228 1.82624 1.20683 0.81714 0.87774 0.72538 1.90859 1.61422 1.41830 1.45912 1.20029 0.89380 0.91587 0.96748 1.22144 0.96020 0.98429 1.11005 1.18717 0.87055 0.88514 0.86483 1.45279 1.00219 1.11386 1.73247 1.18679 0.86472 0.84039 0.93765 0.96339 1.22025 0.99335 1.01623 0.97007 1.21401 0.97036 0.98584 1.42061 0.91314 1.25670 1.02170 0.94721 0.95267 1.69985 1.33536 1.05004 1.46268 0.85435 0.78353 0.77891 0.78917 1.19198 1.20883 1.19760 1.67884 1.04095 1.34650 1.23973 1.23863 0.88192 0.92790 0.87139 1.20713 0.96119 0.91172 1.05296 1.68304 1.38883 0.98597 1.20276 0.91147 0.91193 0.87596 0.90883 0.90805 0.84268 0.75532 0.90719 0.94281 0.96020 0.92260 0.87882 0.87959 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 10.29 71.98 0.74 -1.24 16 2 C 0.05 0.99 6.19 71.98 0.45 1.43 16 3 O -0.33 -9.84 10.07 -55.51 -0.56 -10.39 16 4 C 0.53 18.93 7.97 70.52 0.56 19.49 16 5 O -0.51 -20.42 16.20 20.18 0.33 -20.09 16 6 C 0.16 6.16 6.78 41.82 0.28 6.45 16 7 C -0.25 -10.13 8.49 22.88 0.19 -9.93 16 8 C 0.44 17.78 7.69 133.29 1.03 18.80 16 9 N -0.67 -28.28 5.22 -327.57 -1.71 -29.99 16 10 C 0.27 13.27 2.26 44.24 0.10 13.37 16 11 H 0.02 1.02 6.50 -2.39 -0.02 1.00 16 12 C -0.14 -6.67 9.24 71.98 0.67 -6.01 16 13 C -0.55 -28.43 8.73 25.60 0.22 -28.21 16 14 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 15 C 0.02 1.19 5.30 84.65 0.45 1.64 16 16 N -0.91 -49.78 11.32 21.45 0.24 -49.54 16 17 Si 0.97 41.19 29.54 68.60 2.03 43.21 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 N -0.58 -20.77 10.35 -185.48 -1.92 -22.69 16 22 C 0.35 10.98 7.64 138.81 1.06 12.04 16 23 C -0.07 -1.48 10.31 71.24 0.73 -0.75 16 24 N -0.54 -18.33 10.14 -177.36 -1.80 -20.13 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.14 6.29 6.03 -2.91 -0.02 6.28 16 31 H 0.41 15.94 8.66 -92.70 -0.80 15.14 16 32 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.02 0.94 7.81 -2.39 -0.02 0.92 16 35 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -61.60 329.45 3.38 -58.22 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.28 Total: 24.32 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: 6.48 Total: 27.08 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -5.18 Total: -122.34 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.23 Total: -30.49 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -61.60 3.38 -58.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881896436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.464 kcal (2) G-P(sol) polarization free energy of solvation -61.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds