Wall clock time and date at job start Tue Mar 31 2020 00:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45191 * 109.47338 * 2 1 4 4 C 1.34639 * 117.00469 * 179.97438 * 3 2 1 5 5 O 1.21394 * 119.99490 * 0.02562 * 4 3 2 6 6 C 1.48358 * 120.00284 * 179.97438 * 4 3 2 7 7 C 1.39110 * 120.51154 * 180.29956 * 6 4 3 8 8 C 1.39872 * 118.18325 * 180.23969 * 7 6 4 9 9 N 1.38512 * 120.51204 * 179.73862 * 8 7 6 10 10 C 1.46498 * 119.99900 * 0.02562 * 9 8 7 11 11 H 1.08995 * 109.47013 * 324.72154 * 10 9 8 12 12 C 1.52999 * 109.47257 * 84.72140 * 10 9 8 13 13 C 1.50696 * 109.47047 * 204.72134 * 10 9 8 14 14 H 1.08003 * 120.00092 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00258 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00028 * 179.97438 * 15 13 10 17 17 Si 1.86794 * 119.99858 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47354 * 89.99590 * 17 15 13 19 19 H 1.48501 * 109.46908 * 209.99697 * 17 15 13 20 20 H 1.48506 * 109.47061 * 329.99324 * 17 15 13 21 21 N 1.32825 * 118.97417 * 359.46790 * 8 7 6 22 22 C 1.31850 * 120.91751 * 0.27695 * 21 8 7 23 23 C 1.50703 * 118.99079 * 180.02562 * 22 21 8 24 24 N 1.31546 * 122.01872 * 359.97438 * 22 21 8 25 25 H 1.08998 * 109.47202 * 299.99639 * 1 2 3 26 26 H 1.08999 * 109.46935 * 60.00300 * 1 2 3 27 27 H 1.09006 * 109.46778 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47534 * 239.99461 * 2 1 3 29 29 H 1.09007 * 109.47116 * 120.00325 * 2 1 3 30 30 H 1.08000 * 120.91036 * 359.97438 * 7 6 4 31 31 H 0.97001 * 119.99655 * 179.72107 * 9 8 7 32 32 H 1.08996 * 109.47245 * 299.99926 * 12 10 9 33 33 H 1.08995 * 109.47098 * 60.00065 * 12 10 9 34 34 H 1.09003 * 109.47054 * 179.97438 * 12 10 9 35 35 H 0.97003 * 120.00277 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.46930 * 90.00016 * 23 22 21 37 37 H 1.09001 * 109.47004 * 209.99897 * 23 22 21 38 38 H 1.08995 * 109.47198 * 329.99796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0883 0.5826 0.0005 6 6 3.9159 2.9163 0.0000 7 6 5.2933 3.1108 -0.0057 8 6 5.7750 4.4240 -0.0008 9 7 7.1375 4.6732 -0.0007 10 6 8.0863 3.5571 -0.0063 11 1 7.6829 2.7343 0.5838 12 6 8.3145 3.0889 -1.4450 13 6 9.3954 4.0076 0.5889 14 1 9.5091 5.0237 0.9370 15 6 10.4477 3.1225 0.6901 16 7 11.5903 3.5158 1.2091 17 14 10.2509 1.3649 0.0887 18 1 10.6444 1.2839 -1.3409 19 1 11.1182 0.4667 0.8926 20 1 8.8335 0.9470 0.2365 21 7 4.9057 5.4282 -0.0017 22 6 3.6070 5.2001 -0.0017 23 6 2.6596 6.3720 -0.0034 24 7 3.1131 3.9809 -0.0013 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.9722 2.2709 -0.0094 31 1 7.4633 5.5869 -0.0014 32 1 7.3677 2.7630 -1.8755 33 1 8.7179 3.9116 -2.0351 34 1 9.0208 2.2587 -1.4491 35 1 12.3307 2.8932 1.2799 36 1 2.4314 6.6533 -1.0315 37 1 1.7389 6.0957 0.5106 38 1 3.1231 7.2147 0.5095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881896437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:06 Heat of formation + Delta-G solvation = -32.128416 kcal Electronic energy + Delta-G solvation = -21494.041658 eV Core-core repulsion = 18144.178301 eV Total energy + Delta-G solvation = -3349.863356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04750 -40.01238 -36.84646 -36.70460 -33.70753 -33.15180 -31.76586 -31.69363 -29.31881 -28.26929 -25.89833 -25.26746 -23.13184 -22.71450 -21.14832 -20.43794 -18.35128 -18.24092 -16.79264 -16.68258 -16.49293 -15.52577 -15.20794 -15.08203 -14.81456 -14.15907 -13.93573 -13.62613 -13.40024 -13.21810 -12.95556 -12.77339 -12.39131 -12.34915 -12.22976 -12.02718 -11.76721 -11.67138 -10.96722 -10.84942 -10.79244 -10.64880 -10.59537 -10.28711 -9.77552 -9.57050 -9.42964 -9.07496 -8.82715 -7.64617 -6.33507 -4.38476 0.63781 1.48298 2.40671 2.56739 3.12832 3.24494 3.26188 3.50210 4.01132 4.06381 4.17714 4.47758 4.74698 4.78974 4.93682 4.98731 5.06836 5.10416 5.34643 5.52307 5.57826 5.62055 5.64481 5.74976 5.84037 5.91552 6.02569 6.13901 6.24530 6.27865 6.42468 6.58520 6.94878 6.97593 7.24477 7.49861 7.72429 8.06880 8.26860 8.48823 8.66869 9.23973 10.78398 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.005042 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.140909 B = 5552.487297 C = 6948.533312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.332 6.332 4 C 0.528 3.472 5 O -0.491 6.491 6 C 0.166 3.834 7 C -0.230 4.230 8 C 0.449 3.551 9 N -0.665 5.665 10 C 0.237 3.763 11 H 0.046 0.954 12 C -0.169 4.169 13 C -0.539 4.539 14 H 0.084 0.916 15 C 0.082 3.918 16 N -0.886 5.886 17 Si 0.884 3.116 18 H -0.274 1.274 19 H -0.291 1.291 20 H -0.263 1.263 21 N -0.573 5.573 22 C 0.356 3.644 23 C -0.079 4.079 24 N -0.537 5.537 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.157 0.843 31 H 0.409 0.591 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.270 0.730 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.200 -2.322 -3.492 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.247 6.247 4 C 0.370 3.630 5 O -0.377 6.377 6 C 0.025 3.975 7 C -0.260 4.260 8 C 0.199 3.801 9 N -0.291 5.291 10 C 0.134 3.866 11 H 0.063 0.937 12 C -0.227 4.227 13 C -0.577 4.577 14 H 0.102 0.898 15 C -0.123 4.123 16 N -0.522 5.522 17 Si 0.713 3.287 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.188 1.188 21 N -0.300 5.300 22 C 0.086 3.914 23 C -0.138 4.138 24 N -0.261 5.261 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.174 0.826 31 H 0.246 0.754 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.230 -2.189 -3.426 19.655 hybrid contribution 0.983 -1.543 -0.332 1.859 sum -18.247 -3.732 -3.758 19.001 Atomic orbital electron populations 1.21785 0.92417 1.02802 1.03739 1.23112 0.95585 0.80214 1.02740 1.86671 1.22897 1.31823 1.83318 1.20796 0.80978 0.88399 0.72877 1.90864 1.60709 1.41273 1.44831 1.19834 0.89613 0.90634 0.97418 1.22227 0.95577 0.98677 1.09537 1.18626 0.87040 0.88115 0.86282 1.45196 0.99801 1.11662 1.72484 1.19356 0.88741 0.85391 0.93132 0.93655 1.22589 0.99570 1.01179 0.99402 1.20906 0.94009 1.00537 1.42225 0.89798 1.24816 0.94728 0.98570 0.94192 1.69849 1.02876 1.36038 1.43392 0.86913 0.78800 0.84513 0.78501 1.20034 1.21791 1.18752 1.67773 1.03478 1.35255 1.23498 1.22808 0.88025 0.91714 0.88868 1.20513 0.96677 0.92960 1.03647 1.68179 1.39285 0.98465 1.20169 0.91335 0.91369 0.90285 0.91102 0.91061 0.82583 0.75407 0.94618 0.92042 0.92831 0.92008 0.89825 0.89706 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.33 -4.76 10.07 -40.33 -0.41 -5.17 16 4 C 0.53 8.80 7.97 34.90 0.28 9.08 16 5 O -0.49 -8.96 16.20 -19.18 -0.31 -9.27 16 6 C 0.17 2.92 6.78 -82.72 -0.56 2.36 16 7 C -0.23 -4.29 8.44 -38.65 -0.33 -4.62 16 8 C 0.45 8.46 7.69 -154.85 -1.19 7.27 16 9 N -0.67 -13.09 5.22 -54.89 -0.29 -13.38 16 10 C 0.24 5.24 1.85 -69.09 -0.13 5.11 16 11 H 0.05 1.04 5.58 -51.93 -0.29 0.75 16 12 C -0.17 -3.48 8.92 37.16 0.33 -3.15 16 13 C -0.54 -14.01 9.31 -34.44 -0.32 -14.33 16 14 H 0.08 2.34 7.98 -52.48 -0.42 1.92 16 15 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 16 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 17 Si 0.88 20.64 24.37 -169.99 -4.14 16.50 16 18 H -0.27 -6.20 6.87 56.52 0.39 -5.81 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.26 -5.93 6.53 56.52 0.37 -5.56 16 21 N -0.57 -10.06 10.35 -9.98 -0.10 -10.16 16 22 C 0.36 5.61 7.64 -157.36 -1.20 4.41 16 23 C -0.08 -0.86 10.31 36.01 0.37 -0.49 16 24 N -0.54 -8.99 10.14 -7.41 -0.08 -9.07 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.16 3.02 5.96 -52.49 -0.31 2.71 16 31 H 0.41 7.74 8.66 -40.82 -0.35 7.38 16 32 H 0.03 0.66 7.71 -51.93 -0.40 0.26 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 322.41 15.07 4.86 4.86 Total: -1.00 -29.83 322.41 -6.86 -36.69 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.93 Total: 5.90 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -2.23 Total: 7.84 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.31 Total: -57.34 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.72 Total: -14.43 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.14 Total: 16.50 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.83 -6.86 -36.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881896437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.557 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds