Wall clock time and date at job start Tue Mar 31 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45191 * 109.47338 * 2 1 4 4 C 1.34639 * 117.00469 * 179.97438 * 3 2 1 5 5 O 1.21394 * 119.99490 * 0.02562 * 4 3 2 6 6 C 1.48358 * 120.00284 * 179.97438 * 4 3 2 7 7 C 1.39110 * 120.51154 * 180.29956 * 6 4 3 8 8 C 1.39872 * 118.18325 * 180.23969 * 7 6 4 9 9 N 1.38512 * 120.51204 * 179.73862 * 8 7 6 10 10 C 1.46498 * 119.99900 * 0.02562 * 9 8 7 11 11 H 1.08995 * 109.47013 * 324.72154 * 10 9 8 12 12 C 1.52999 * 109.47257 * 84.72140 * 10 9 8 13 13 C 1.50696 * 109.47047 * 204.72134 * 10 9 8 14 14 H 1.08003 * 120.00092 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00258 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00028 * 179.97438 * 15 13 10 17 17 Si 1.86794 * 119.99858 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47354 * 89.99590 * 17 15 13 19 19 H 1.48501 * 109.46908 * 209.99697 * 17 15 13 20 20 H 1.48506 * 109.47061 * 329.99324 * 17 15 13 21 21 N 1.32825 * 118.97417 * 359.46790 * 8 7 6 22 22 C 1.31850 * 120.91751 * 0.27695 * 21 8 7 23 23 C 1.50703 * 118.99079 * 180.02562 * 22 21 8 24 24 N 1.31546 * 122.01872 * 359.97438 * 22 21 8 25 25 H 1.08998 * 109.47202 * 299.99639 * 1 2 3 26 26 H 1.08999 * 109.46935 * 60.00300 * 1 2 3 27 27 H 1.09006 * 109.46778 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47534 * 239.99461 * 2 1 3 29 29 H 1.09007 * 109.47116 * 120.00325 * 2 1 3 30 30 H 1.08000 * 120.91036 * 359.97438 * 7 6 4 31 31 H 0.97001 * 119.99655 * 179.72107 * 9 8 7 32 32 H 1.08996 * 109.47245 * 299.99926 * 12 10 9 33 33 H 1.08995 * 109.47098 * 60.00065 * 12 10 9 34 34 H 1.09003 * 109.47054 * 179.97438 * 12 10 9 35 35 H 0.97003 * 120.00277 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.46930 * 90.00016 * 23 22 21 37 37 H 1.09001 * 109.47004 * 209.99897 * 23 22 21 38 38 H 1.08995 * 109.47198 * 329.99796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0883 0.5826 0.0005 6 6 3.9159 2.9163 0.0000 7 6 5.2933 3.1108 -0.0057 8 6 5.7750 4.4240 -0.0008 9 7 7.1375 4.6732 -0.0007 10 6 8.0863 3.5571 -0.0063 11 1 7.6829 2.7343 0.5838 12 6 8.3145 3.0889 -1.4450 13 6 9.3954 4.0076 0.5889 14 1 9.5091 5.0237 0.9370 15 6 10.4477 3.1225 0.6901 16 7 11.5903 3.5158 1.2091 17 14 10.2509 1.3649 0.0887 18 1 10.6444 1.2839 -1.3409 19 1 11.1182 0.4667 0.8926 20 1 8.8335 0.9470 0.2365 21 7 4.9057 5.4282 -0.0017 22 6 3.6070 5.2001 -0.0017 23 6 2.6596 6.3720 -0.0034 24 7 3.1131 3.9809 -0.0013 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.9722 2.2709 -0.0094 31 1 7.4633 5.5869 -0.0014 32 1 7.3677 2.7630 -1.8755 33 1 8.7179 3.9116 -2.0351 34 1 9.0208 2.2587 -1.4491 35 1 12.3307 2.8932 1.2799 36 1 2.4314 6.6533 -1.0315 37 1 1.7389 6.0957 0.5106 38 1 3.1231 7.2147 0.5095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881896437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:05 Heat of formation + Delta-G solvation = -51.255941 kcal Electronic energy + Delta-G solvation = -21494.871089 eV Core-core repulsion = 18144.178301 eV Total energy + Delta-G solvation = -3350.692788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37841 -41.26625 -38.43475 -37.88941 -35.32370 -34.62620 -33.36837 -32.55526 -30.90522 -29.39857 -27.41530 -26.92612 -24.36470 -23.87112 -22.36272 -22.03536 -19.86262 -19.62668 -18.30708 -17.99915 -17.80016 -17.22170 -16.72577 -16.35784 -16.27423 -15.31842 -15.23458 -15.11656 -14.93239 -14.45598 -14.22827 -14.11267 -13.63746 -13.61726 -13.28920 -13.12419 -12.99508 -12.79092 -12.54020 -12.38368 -12.17467 -12.12881 -11.88522 -11.58117 -11.56127 -11.36217 -10.99535 -10.79242 -10.44285 -9.16375 -8.41669 -6.50212 -0.72522 0.11419 1.24530 1.24898 1.28061 1.35434 1.42819 2.01345 2.22608 2.72052 2.82252 2.93969 3.26258 3.54155 3.77163 3.99911 4.05065 4.14790 4.25748 4.32652 4.36423 4.47544 4.56615 4.74247 4.79115 4.82317 4.89577 4.92926 4.93590 5.03099 5.25682 5.31040 5.32910 5.37490 5.57063 5.89277 6.26133 6.46328 6.48539 6.66308 7.09848 7.18594 8.73838 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.005042 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.140909 B = 5552.487297 C = 6948.533312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.333 6.333 4 C 0.531 3.469 5 O -0.511 6.511 6 C 0.166 3.834 7 C -0.247 4.247 8 C 0.442 3.558 9 N -0.671 5.671 10 C 0.246 3.754 11 H 0.040 0.960 12 C -0.164 4.164 13 C -0.539 4.539 14 H 0.052 0.948 15 C 0.031 3.969 16 N -0.933 5.933 17 Si 0.938 3.062 18 H -0.258 1.258 19 H -0.293 1.293 20 H -0.250 1.250 21 N -0.578 5.578 22 C 0.352 3.648 23 C -0.077 4.077 24 N -0.535 5.535 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.410 0.590 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.272 0.728 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.949 -3.016 -4.416 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.248 6.248 4 C 0.373 3.627 5 O -0.399 6.399 6 C 0.024 3.976 7 C -0.278 4.278 8 C 0.194 3.806 9 N -0.299 5.299 10 C 0.142 3.858 11 H 0.058 0.942 12 C -0.222 4.222 13 C -0.577 4.577 14 H 0.070 0.930 15 C -0.169 4.169 16 N -0.571 5.571 17 Si 0.764 3.236 18 H -0.184 1.184 19 H -0.221 1.221 20 H -0.174 1.174 21 N -0.305 5.305 22 C 0.083 3.917 23 C -0.135 4.135 24 N -0.258 5.258 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.123 0.877 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.247 0.753 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.044 -2.859 -4.361 22.652 hybrid contribution 1.664 -1.243 -0.001 2.077 sum -20.380 -4.102 -4.362 21.241 Atomic orbital electron populations 1.21820 0.89779 1.04569 1.03858 1.23527 0.97588 0.78405 1.03127 1.86665 1.21303 1.34253 1.82553 1.20658 0.81716 0.87737 0.72540 1.90848 1.61375 1.41733 1.45947 1.20048 0.89441 0.91560 0.96519 1.22153 0.96093 0.98254 1.11256 1.18663 0.86697 0.88658 0.86555 1.44912 1.00122 1.10995 1.73847 1.19057 0.87207 0.85754 0.93792 0.94224 1.22481 1.00480 1.01037 0.98199 1.21142 0.95855 0.99164 1.41575 0.93021 1.25587 0.94336 1.02616 0.94409 1.69976 1.03973 1.37663 1.45490 0.86021 0.79312 0.79573 0.78670 1.18384 1.22074 1.17399 1.67866 1.04155 1.34857 1.23611 1.23829 0.88062 0.92786 0.87033 1.20723 0.96151 0.91226 1.05365 1.68316 1.38976 0.98622 1.19908 0.91255 0.91174 0.87658 0.90675 0.90819 0.83517 0.75288 0.92616 0.91752 0.93340 0.91882 0.87723 0.87971 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.29 71.98 0.74 -1.02 16 2 C 0.05 0.90 6.19 71.98 0.45 1.34 16 3 O -0.33 -8.99 10.07 -55.48 -0.56 -9.55 16 4 C 0.53 17.13 7.97 70.52 0.56 17.69 16 5 O -0.51 -18.25 16.20 20.18 0.33 -17.92 16 6 C 0.17 5.67 6.78 41.82 0.28 5.95 16 7 C -0.25 -9.10 8.44 22.87 0.19 -8.91 16 8 C 0.44 16.43 7.69 133.28 1.02 17.46 16 9 N -0.67 -26.49 5.22 -327.58 -1.71 -28.19 16 10 C 0.25 10.86 1.85 44.24 0.08 10.94 16 11 H 0.04 1.82 5.58 -2.39 -0.01 1.80 16 12 C -0.16 -6.53 8.92 71.98 0.64 -5.89 16 13 C -0.54 -28.66 9.31 25.60 0.24 -28.42 16 14 H 0.05 3.01 7.98 -2.91 -0.02 2.99 16 15 C 0.03 1.69 5.45 84.66 0.46 2.15 16 16 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 17 Si 0.94 42.33 24.37 68.60 1.67 44.00 16 18 H -0.26 -10.96 6.87 99.48 0.68 -10.28 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.25 -10.68 6.53 99.48 0.65 -10.03 16 21 N -0.58 -19.54 10.35 -185.47 -1.92 -21.46 16 22 C 0.35 10.34 7.64 138.81 1.06 11.40 16 23 C -0.08 -1.42 10.31 71.24 0.73 -0.68 16 24 N -0.54 -16.88 10.14 -177.36 -1.80 -18.68 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.15 5.64 5.96 -2.91 -0.02 5.62 16 31 H 0.41 15.76 8.66 -92.71 -0.80 14.95 16 32 H 0.05 1.98 7.71 -2.39 -0.02 1.97 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.05 1.98 3.27 -2.39 -0.01 1.97 16 35 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -64.58 322.41 2.99 -61.59 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.21 Total: 23.04 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 6.47 Total: 22.01 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -5.13 Total: -123.17 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.23 Total: -27.47 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.67 Total: 44.00 kcal Total: -64.58 2.99 -61.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881896437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.333 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds