Wall clock time and date at job start Tue Mar 31 2020 00:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46887 * 2 1 4 4 C 1.34638 * 116.99819 * 179.97438 * 3 2 1 5 5 O 1.21393 * 120.00286 * 0.02562 * 4 3 2 6 6 C 1.48359 * 119.99873 * 179.72706 * 4 3 2 7 7 C 1.39109 * 120.51208 * 180.27578 * 6 4 3 8 8 C 1.39871 * 118.18328 * 179.97438 * 7 6 4 9 9 N 1.38512 * 120.51282 * 180.02562 * 8 7 6 10 10 C 1.46495 * 119.99832 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.47120 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47294 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00120 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00107 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99878 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47427 * 89.99756 * 16 14 12 18 18 H 1.48508 * 109.46990 * 209.99997 * 16 14 12 19 19 H 1.48494 * 109.47314 * 329.99443 * 16 14 12 20 20 N 1.32827 * 118.97792 * 0.02562 * 8 7 6 21 21 C 1.31856 * 120.91578 * 359.97438 * 20 8 7 22 22 C 1.50703 * 118.99000 * 180.02562 * 21 20 8 23 23 N 1.31544 * 122.01377 * 359.71837 * 21 20 8 24 24 H 1.09004 * 109.46566 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46911 * 299.99623 * 1 2 3 26 26 H 1.09005 * 109.47039 * 60.00183 * 1 2 3 27 27 H 1.08997 * 109.46911 * 240.00377 * 2 1 3 28 28 H 1.08997 * 109.47194 * 120.00096 * 2 1 3 29 29 H 1.08001 * 120.90805 * 359.97438 * 7 6 4 30 30 H 0.96999 * 119.99824 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47722 * 300.00283 * 10 9 8 32 32 H 1.09007 * 109.47063 * 60.00555 * 10 9 8 33 33 H 1.08996 * 109.47495 * 300.00365 * 11 10 9 34 34 H 1.09000 * 109.47306 * 60.00527 * 11 10 9 35 35 H 0.97007 * 119.99863 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.46820 * 90.00577 * 22 21 20 37 37 H 1.09002 * 109.47013 * 209.99890 * 22 21 20 38 38 H 1.08990 * 109.47368 * 329.99981 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0883 0.5828 0.0005 6 6 3.9158 2.9164 -0.0055 7 6 5.2932 3.1110 -0.0108 8 6 5.7748 4.4241 -0.0170 9 7 7.1373 4.6735 -0.0229 10 6 8.0862 3.5574 -0.0234 11 6 9.5155 4.1031 -0.0311 12 6 10.4916 2.9550 -0.0322 13 1 10.1289 1.9377 -0.0282 14 6 11.8479 3.2032 -0.0382 15 7 12.2896 4.4419 -0.0435 16 14 13.0578 1.7800 -0.0402 17 1 13.3727 1.3999 -1.4408 18 1 14.3051 2.1897 0.6539 19 1 12.4576 0.6190 0.6647 20 7 4.9055 5.4284 -0.0171 21 6 3.6068 5.2002 -0.0119 22 6 2.6593 6.3722 -0.0128 23 7 3.1130 3.9810 -0.0120 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.9721 2.2711 -0.0102 30 1 7.4631 5.5871 -0.0268 31 1 7.9335 2.9502 0.8689 32 1 7.9267 2.9452 -0.9111 33 1 9.6679 4.7100 -0.9235 34 1 9.6754 4.7155 0.8563 35 1 13.2438 4.6165 -0.0481 36 1 2.4274 6.6510 -1.0407 37 1 1.7405 6.0969 0.5050 38 1 3.1246 7.2160 0.4965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882174761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:01 Heat of formation + Delta-G solvation = -47.619723 kcal Electronic energy + Delta-G solvation = -20717.153648 eV Core-core repulsion = 17366.618538 eV Total energy + Delta-G solvation = -3350.535110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19274 -40.12772 -36.80411 -36.69576 -33.76345 -33.35512 -31.92234 -31.82838 -29.24494 -28.39999 -25.94177 -24.96469 -23.16814 -22.25061 -21.33694 -20.83746 -18.53322 -17.95083 -16.88559 -16.77356 -16.47865 -15.39392 -15.37148 -15.06032 -14.65923 -14.33437 -14.08393 -14.07334 -13.95779 -13.39691 -13.01842 -12.69700 -12.45686 -12.32533 -12.19880 -11.83323 -11.50871 -11.40549 -10.99896 -10.95833 -10.73451 -10.72317 -10.66124 -10.36069 -9.77069 -9.65581 -9.42321 -9.23764 -8.52631 -7.91335 -6.17409 -4.21726 0.48314 1.29499 2.29752 2.43694 3.22617 3.24698 3.31663 3.36155 3.87056 3.89672 4.31431 4.35032 4.69050 4.71169 4.77141 4.92252 5.02480 5.19917 5.22201 5.42895 5.50184 5.52001 5.52505 5.66491 5.71718 5.79923 5.96400 6.03274 6.16005 6.30654 6.47508 6.75685 7.20414 7.43994 7.46889 7.58876 7.75840 7.81646 8.15626 8.30578 8.83716 9.43933 10.94039 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003537 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.721558 B = 7913.333092 C = 9407.690840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.331 6.331 4 C 0.528 3.472 5 O -0.489 6.489 6 C 0.169 3.831 7 C -0.229 4.229 8 C 0.446 3.554 9 N -0.689 5.689 10 C 0.118 3.882 11 C 0.014 3.986 12 C -0.526 4.526 13 H 0.061 0.939 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 N -0.569 5.569 21 C 0.357 3.643 22 C -0.081 4.081 23 N -0.532 5.532 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.411 0.589 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.741 -2.254 0.093 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.247 6.247 4 C 0.369 3.631 5 O -0.375 6.375 6 C 0.028 3.972 7 C -0.259 4.259 8 C 0.197 3.803 9 N -0.318 5.318 10 C -0.005 4.005 11 C -0.023 4.023 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 N -0.296 5.296 21 C 0.087 3.913 22 C -0.139 4.139 23 N -0.255 5.255 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.176 0.824 30 H 0.247 0.753 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.823 -1.970 0.089 21.912 hybrid contribution 1.630 -1.261 -0.028 2.061 sum -20.193 -3.232 0.061 20.450 Atomic orbital electron populations 1.21792 0.92371 1.02873 1.03753 1.23131 0.95626 0.80049 1.02807 1.86671 1.22797 1.31988 1.83237 1.20746 0.81075 0.88291 0.72973 1.90870 1.60698 1.41208 1.44732 1.19881 0.89614 0.90736 0.96988 1.22167 0.95722 0.98428 1.09553 1.18586 0.86815 0.88240 0.86629 1.45226 1.00427 1.11755 1.74384 1.22049 0.90264 0.87455 1.00685 1.19303 0.87232 0.97464 0.98325 1.20990 0.90795 0.92600 1.52101 0.92126 1.24996 0.98554 0.95851 0.94788 1.69954 1.14516 1.18695 1.49816 0.86490 0.80419 0.82264 0.78272 1.20490 1.21099 1.19663 1.67772 1.03592 1.35304 1.22929 1.22857 0.87931 0.91780 0.88716 1.20537 0.96682 0.92875 1.03829 1.68204 1.39345 0.98495 1.19482 0.90217 0.91338 0.91343 0.91008 0.91005 0.82435 0.75271 0.92094 0.92109 0.95615 0.95601 0.92690 0.89654 0.89576 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.33 -4.38 10.07 -40.33 -0.41 -4.78 16 4 C 0.53 8.02 7.97 34.90 0.28 8.29 16 5 O -0.49 -8.16 16.20 -19.18 -0.31 -8.47 16 6 C 0.17 2.69 6.78 -82.72 -0.56 2.13 16 7 C -0.23 -3.76 8.94 -38.65 -0.35 -4.10 16 8 C 0.45 7.48 7.71 -154.85 -1.19 6.29 16 9 N -0.69 -11.82 5.71 -60.25 -0.34 -12.16 16 10 C 0.12 2.25 4.87 -4.05 -0.02 2.24 16 11 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 12 C -0.53 -14.02 9.11 -34.44 -0.31 -14.33 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 16 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 N -0.57 -9.11 10.35 -9.97 -0.10 -9.21 16 21 C 0.36 5.14 7.64 -157.35 -1.20 3.94 16 22 C -0.08 -0.79 10.31 36.01 0.37 -0.42 16 23 N -0.53 -8.15 10.14 -7.41 -0.08 -8.23 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.16 2.57 6.55 -52.49 -0.34 2.23 16 30 H 0.41 6.78 8.60 -40.82 -0.35 6.43 16 31 H 0.06 1.15 7.97 -51.93 -0.41 0.74 16 32 H 0.06 1.15 7.98 -51.92 -0.41 0.73 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -30.50 335.53 -8.37 -38.88 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.29 Total: 1.99 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.61 Total: 5.94 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.21 Total: -54.48 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.72 Total: -13.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.50 -8.37 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882174761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.745 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds